CL:0002596: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=smooth muscle cell of the carotid artery | |name=smooth muscle cell of the carotid artery | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-06T05:01:56Z | |obo_creation_date=2011-03-06T05:01:56Z | ||
|part_of=UBERON:0005396 | |part_of=UBERON:0005396 | ||
Latest revision as of 16:45, 12 September 2014
| Name: | smooth muscle cell of the carotid artery |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Smooth muscle cell of the carotid artery." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T05:01:56Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000359(vascular associated smooth muscle cell) |
|---|---|
| part_of: | UBERON:0005396(carotid artery segment) |
Children
| derives from: | FF:0000171 (human smooth muscle cell of the carotid artery sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11362-117I3 (Smooth Muscle Cells - Carotid, donor2)
- 11434-118H3 (Smooth Muscle Cells - Carotid, donor3)
Mouse (Mus musculus)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11362-117I3 (Smooth Muscle Cells - Carotid, donor2)
- 11434-118H3 (Smooth Muscle Cells - Carotid, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002596 (smooth muscle cell of the carotid artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:169985638..169985652,-#_75463d8e80808552483d3c223d09534f | p@chr1:169985638..169985652, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:169985638..169985652,-#_75463d8e80808552483d3c223d09534f | p@chr1:169985638..169985652, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:25046857..25046871,+#_b716f59035711a1eac4523cd4e469b1b | p@chr1:25046857..25046871, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr7:120725207..120725210,+#_b716f59035711a1eac4523cd4e469b1b | p@chr7:120725207..120725210, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr7:120725207..120725210,+#_b716f59035711a1eac4523cd4e469b1b | p@chr7:120725207..120725210, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:25046857..25046871,+#_b716f59035711a1eac4523cd4e469b1b | p@chr1:25046857..25046871, + |
| 1.87e-31 | FFCP PHASE1:Hg19::chr21:30006488..30006499,+#_700c244e9670565389bc0c59f88b3d43 | p@chr21:30006488..30006499, + |
| 1.87e-31 | FFCP PHASE2:Hg19::chr21:30006488..30006499,+#_700c244e9670565389bc0c59f88b3d43 | p@chr21:30006488..30006499, + |
| 2.18e-31 | FFCP PHASE1:Hg19::chr17:80575169..80575172,-#_4b805a76bec7f55f1dd54a11fec4f8ea | p@chr17:80575169..80575172, - |
| 2.18e-31 | FFCP PHASE2:Hg19::chr17:80575169..80575172,-#_4b805a76bec7f55f1dd54a11fec4f8ea | p@chr17:80575169..80575172, - |
| 4.32e-26 | FFCP PHASE1:Hg19::chr7:82172409..82172413,+#_078b2831d13fe1892d33cc097cd655c0 | p@chr7:82172409..82172413, + |
| 4.32e-26 | FFCP PHASE2:Hg19::chr7:82172409..82172413,+#_078b2831d13fe1892d33cc097cd655c0 | p@chr7:82172409..82172413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:114720368..114720377,-#_8c76ded36d3a1ea92a6f365f9b75e246 | p@chr9:114720368..114720377, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:114720368..114720377,-#_8c76ded36d3a1ea92a6f365f9b75e246 | p@chr9:114720368..114720377, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:136397717..136397720,-#_d95a51b53668f5f5ec76ab3ab2c9cdbb | p@chr6:136397717..136397720, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:6806552..6806592,-#_d95a51b53668f5f5ec76ab3ab2c9cdbb | p@chr12:6806552..6806592, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr11:120317216..120317220,+#_d95a51b53668f5f5ec76ab3ab2c9cdbb | p@chr11:120317216..120317220, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:6806552..6806592,-#_d95a51b53668f5f5ec76ab3ab2c9cdbb | p@chr12:6806552..6806592, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:136397717..136397720,-#_d95a51b53668f5f5ec76ab3ab2c9cdbb | p@chr6:136397717..136397720, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:120317216..120317220,+#_d95a51b53668f5f5ec76ab3ab2c9cdbb | p@chr11:120317216..120317220, + |
| 3.53e-22 | FFCP PHASE2:Hg19::chr19:42724302..42724313,-#_8a505513da43f8f7700126ad9fb17dcb | p4@DEDD2 |
| 3.53e-22 | FFCP PHASE1:Hg19::chr19:42724302..42724313,-#_8a505513da43f8f7700126ad9fb17dcb | p4@DEDD2 |
| 1.01e-21 | FFCP PHASE2:Hg19::chr21:47539028..47539037,+#_9e242f4f2486fe93c6209f0013ceaf62 | p@chr21:47539028..47539037, + |
| 1.01e-21 | FFCP PHASE1:Hg19::chr21:47539028..47539037,+#_9e242f4f2486fe93c6209f0013ceaf62 | p@chr21:47539028..47539037, + |
| 3.81e-21 | FFCP PHASE1:Hg19::chr22:36727653..36727660,-#_4f62ad6cd8818702ff8d22faf3518456 | p@chr22:36727653..36727660, - |
| 3.81e-21 | FFCP PHASE1:Hg19::chr3:51429598..51429609,+#_4f62ad6cd8818702ff8d22faf3518456 | p12@RBM15B |
| 3.81e-21 | FFCP PHASE2:Hg19::chr22:36727653..36727660,-#_4f62ad6cd8818702ff8d22faf3518456 | p@chr22:36727653..36727660, - |
| 3.81e-21 | FFCP PHASE2:Hg19::chr2:216578345..216578377,+#_4f62ad6cd8818702ff8d22faf3518456 | p@chr2:216578345..216578377, + |
| 3.81e-21 | FFCP PHASE2:Hg19::chr3:51429598..51429609,+#_4f62ad6cd8818702ff8d22faf3518456 | p12@RBM15B |
| 3.81e-21 | FFCP PHASE1:Hg19::chr2:216578345..216578377,+#_4f62ad6cd8818702ff8d22faf3518456 | p@chr2:216578345..216578377, + |
| 4.66e-21 | FFCP PHASE2:Hg19::chr1:25046892..25046903,+#_5f1bd78ebf69a345f9c838828e007b89 | p@chr1:25046892..25046903, + |
| 4.66e-21 | FFCP PHASE1:Hg19::chr1:25046892..25046903,+#_5f1bd78ebf69a345f9c838828e007b89 | p@chr1:25046892..25046903, + |
| 5.7e-21 | FFCP PHASE2:Hg19::chr12:57628774..57628785,-#_8196b71f57a3823dadb2571665e51d5a | p@chr12:57628774..57628785, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_8196b71f57a3823dadb2571665e51d5a | p6@HYI |
| 5.7e-21 | FFCP PHASE1:Hg19::chr12:65959570..65959573,-#_8196b71f57a3823dadb2571665e51d5a | p@chr12:65959570..65959573, - |
| 5.7e-21 | FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_8196b71f57a3823dadb2571665e51d5a | p6@HYI |
| 5.7e-21 | FFCP PHASE1:Hg19::chr12:57628774..57628785,-#_8196b71f57a3823dadb2571665e51d5a | p@chr12:57628774..57628785, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr12:65959570..65959573,-#_8196b71f57a3823dadb2571665e51d5a | p@chr12:65959570..65959573, - |
| 2.26e-20 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_376259a5b8bbb174d9ad4d824d219db2 | p@chr2:134548872..134548879, - |
| 2.26e-20 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_376259a5b8bbb174d9ad4d824d219db2 | p@chr2:134548872..134548879, - |
| 1.24e-19 | FFCP PHASE2:Hg19::chr12:122261654..122261658,+#_0bd34687c431f28a52905cbfed657563 | p@chr12:122261654..122261658, + |
| 1.24e-19 | FFCP PHASE1:Hg19::chr12:122261654..122261658,+#_0bd34687c431f28a52905cbfed657563 | p@chr12:122261654..122261658, + |
| 8.4e-19 | FFCP PHASE1:Hg19::chr12:12939901..12939915,-#_b9ddbd76ff361fa2cc7b50bcd509d9ad | p@chr12:12939901..12939915, - |
| 8.4e-19 | FFCP PHASE2:Hg19::chr12:12939901..12939915,-#_b9ddbd76ff361fa2cc7b50bcd509d9ad | p@chr12:12939901..12939915, - |
| 3.16e-18 | FFCP PHASE1:Hg19::chr11:122073019..122073034,-#_8586553cbc7a3742efc4704285711ce8 | p@chr11:122073019..122073034, - |
| 3.16e-18 | FFCP PHASE2:Hg19::chr11:122073019..122073034,-#_8586553cbc7a3742efc4704285711ce8 | p@chr11:122073019..122073034, - |
| 5.48e-18 | FFCP PHASE2:Hg19::chr4:169022528..169022531,+#_90911976f32ceab6907a9cd7be098c7b | p@chr4:169022528..169022531, + |
| 5.48e-18 | FFCP PHASE1:Hg19::chr4:169022528..169022531,+#_90911976f32ceab6907a9cd7be098c7b | p@chr4:169022528..169022531, + |
| 6.27e-18 | FFCP PHASE1:Hg19::chr2:47109897..47109901,+#_9f78866de79316c0bb4ce935bbe90731 | p@chr2:47109897..47109901, + |
| 6.27e-18 | FFCP PHASE2:Hg19::chr2:47109897..47109901,+#_9f78866de79316c0bb4ce935bbe90731 | p@chr2:47109897..47109901, + |
| 6.48e-18 | FFCP PHASE2:Hg19::chr6:27198375..27198387,-#_330350b9fbd75df5b479347ffa3dde3d | p@chr6:27198375..27198387, - |
| 6.48e-18 | FFCP PHASE1:Hg19::chr6:27198375..27198387,-#_330350b9fbd75df5b479347ffa3dde3d | p@chr6:27198375..27198387, - |
| 6.48e-18 | FFCP PHASE2:Hg19::chr2:85173188..85173189,-#_330350b9fbd75df5b479347ffa3dde3d | p@chr2:85173188..85173189, - |
| 6.48e-18 | FFCP PHASE1:Hg19::chr2:85173188..85173189,-#_330350b9fbd75df5b479347ffa3dde3d | p@chr2:85173188..85173189, - |
| 7.67e-18 | FFCP PHASE2:Hg19::chr9:33797953..33797969,+#_8f1ee1008c151b591a311b08a46c7275 | p@chr9:33797953..33797969, + |
| 7.67e-18 | FFCP PHASE1:Hg19::chr9:33797953..33797969,+#_8f1ee1008c151b591a311b08a46c7275 | p@chr9:33797953..33797969, + |
| 1.62e-17 | FFCP PHASE1:Hg19::chr16:89595986..89595990,+#_7ba0b23ad513272f28026d93e5e519da | p@chr16:89595986..89595990, + |
| 1.62e-17 | FFCP PHASE2:Hg19::chr16:89595986..89595990,+#_7ba0b23ad513272f28026d93e5e519da | p@chr16:89595986..89595990, + |
| 2.99e-16 | FFCP PHASE2:Hg19::chr17:40672344..40672359,+#_347d940cbbcbd2351ec1ee2b205044ed | p4@ATP6V0A1 |
| 2.99e-16 | FFCP PHASE1:Hg19::chr17:40672344..40672359,+#_347d940cbbcbd2351ec1ee2b205044ed | p4@ATP6V0A1 |
| 4.79e-16 | FFCP PHASE1:Hg19::chr12:127768750..127768765,+#_c55453aede99117d5555280369eba02f | p@chr12:127768750..127768765, + |
| 4.79e-16 | FFCP PHASE2:Hg19::chr12:127768750..127768765,+#_c55453aede99117d5555280369eba02f | p@chr12:127768750..127768765, + |
| 1.15e-15 | FFCP PHASE2:Hg19::chr1:155932380..155932384,-#_c6f5745f8edd89363101d45d792ad0f7 | p45@ARHGEF2 |
| 1.15e-15 | FFCP PHASE1:Hg19::chr1:155932380..155932384,-#_c6f5745f8edd89363101d45d792ad0f7 | p45@ARHGEF2 |
| 1.33e-15 | FFCP PHASE2:Hg19::chr15:80841630..80841633,-#_5f2bb87e6787e55a24f0096c6d09389c | p@chr15:80841630..80841633, - |
| 1.33e-15 | FFCP PHASE1:Hg19::chr15:80841630..80841633,-#_5f2bb87e6787e55a24f0096c6d09389c | p@chr15:80841630..80841633, - |
| 1.54e-15 | FFCP PHASE2:Hg19::chr9:118431048..118431059,+#_9e930b727aad6c61e22cbf6ad1c05bcb | p@chr9:118431048..118431059, + |
| 1.54e-15 | FFCP PHASE2:Hg19::chr21:26713474..26713508,-#_9e930b727aad6c61e22cbf6ad1c05bcb | p@chr21:26713474..26713508, - |
| 1.54e-15 | FFCP PHASE1:Hg19::chr9:118431048..118431059,+#_9e930b727aad6c61e22cbf6ad1c05bcb | p@chr9:118431048..118431059, + |
| 1.54e-15 | FFCP PHASE1:Hg19::chr21:26713474..26713508,-#_9e930b727aad6c61e22cbf6ad1c05bcb | p@chr21:26713474..26713508, - |
| 1.78e-15 | FFCP PHASE2:Hg19::chr12:65959975..65959997,+#_fe76c0f306dd10764561b1120c1239ff | p@chr12:65959975..65959997, + |
| 1.78e-15 | FFCP PHASE1:Hg19::chr12:65959975..65959997,+#_fe76c0f306dd10764561b1120c1239ff | p@chr12:65959975..65959997, + |
| 2.05e-15 | FFCP PHASE1:Hg19::chr18:52495549..52495589,-#_26bbdd3fd81b49aef8b6759e6312fc96 | p@chr18:52495549..52495589, - |
| 2.05e-15 | FFCP PHASE2:Hg19::chr18:52495549..52495589,-#_26bbdd3fd81b49aef8b6759e6312fc96 | p@chr18:52495549..52495589, - |
| 3.37e-15 | FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_df028e78f4ae488649085297a0cea5d4 | p1@ENST00000517635 |
| 3.37e-15 | FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_df028e78f4ae488649085297a0cea5d4 | p1@ENST00000517635 |
| 3.46e-15 | FFCP PHASE1:Hg19::chr12:63097437..63097440,-#_8a951be72da7a8cc8952140249354cae | p@chr12:63097437..63097440, - |
| 3.46e-15 | FFCP PHASE2:Hg19::chr12:63097437..63097440,-#_8a951be72da7a8cc8952140249354cae | p@chr12:63097437..63097440, - |
| 3.99e-15 | FFCP PHASE1:Hg19::chr12:69633237..69633264,-#_e04c367a3b5ea94f98cb5f9ab6e8774d | p@chr12:69633237..69633264, - |
| 3.99e-15 | FFCP PHASE2:Hg19::chr12:69633237..69633264,-#_e04c367a3b5ea94f98cb5f9ab6e8774d | p@chr12:69633237..69633264, - |
| 5.52e-15 | FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_50b6a8b63043cbb866f580ffec10e31a | p@chr3:106484411..106484418, + |
| 5.52e-15 | FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_50b6a8b63043cbb866f580ffec10e31a | p@chr3:106484411..106484418, + |
| 9.65e-15 | FFCP PHASE2:Hg19::chr2:33437467..33437488,+#_b96b6c121832712fd4aa166ed18bd297 | p@chr2:33437467..33437488, + |
| 9.65e-15 | FFCP PHASE1:Hg19::chr2:33437467..33437488,+#_b96b6c121832712fd4aa166ed18bd297 | p@chr2:33437467..33437488, + |
| 2.21e-14 | FFCP PHASE1:Hg19::chr20:48140671..48140693,-#_f4b249d6cadc8c107ed3f9701180651a | p@chr20:48140671..48140693, - |
| 2.21e-14 | FFCP PHASE2:Hg19::chr20:48140671..48140693,-#_f4b249d6cadc8c107ed3f9701180651a | p@chr20:48140671..48140693, - |
| 5.44e-14 | FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_8cebcee497d3d59212694c28d7a83d71 | p8@MICAL2 |
| 5.44e-14 | FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_8cebcee497d3d59212694c28d7a83d71 | p8@MICAL2 |
| 7.07e-14 | FFCP PHASE1:Hg19::chr4:74736899..74736917,+#_13e7d5fc8ca79eaac5e11854bc4ffe5c | p@chr4:74736899..74736917, + |
| 7.07e-14 | FFCP PHASE2:Hg19::chr4:74736899..74736917,+#_13e7d5fc8ca79eaac5e11854bc4ffe5c | p@chr4:74736899..74736917, + |
| 8.06e-14 | FFCP PHASE1:Hg19::chr1:32257811..32257816,-#_b5458a442dd9cc20a97cfbc059da792d | p1@BC098449 |
| 8.06e-14 | FFCP PHASE2:Hg19::chr1:32257811..32257816,-#_b5458a442dd9cc20a97cfbc059da792d | p1@BC098449 |
| 8.28e-14 | FFCP PHASE2:Hg19::chr13:52027062..52027077,-#_144b2ac307626c601075fbf031f907b4 | p13@INTS6 |
| 8.28e-14 | FFCP PHASE1:Hg19::chr11:5385751..5385762,+#_144b2ac307626c601075fbf031f907b4 | p@chr11:5385751..5385762, + |
| 8.28e-14 | FFCP PHASE1:Hg19::chr13:52027062..52027077,-#_144b2ac307626c601075fbf031f907b4 | p13@INTS6 |
| 8.28e-14 | FFCP PHASE2:Hg19::chr11:5385751..5385762,+#_144b2ac307626c601075fbf031f907b4 | p@chr11:5385751..5385762, + |
| 1.07e-13 | FFCP PHASE1:Hg19::chr4:66960590..66960627,-#_b62759f5546bb86cc94f92957a6fc872 | p@chr4:66960590..66960627, - |
| 1.07e-13 | FFCP PHASE1:Hg19::chr10:73619785..73619793,-#_b62759f5546bb86cc94f92957a6fc872 | p@chr10:73619785..73619793, - |
| 1.07e-13 | FFCP PHASE2:Hg19::chr11:1006616..1006623,+#_b62759f5546bb86cc94f92957a6fc872 | p6@AP2A2 |
| 1.07e-13 | FFCP PHASE2:Hg19::chr10:73619785..73619793,-#_b62759f5546bb86cc94f92957a6fc872 | p@chr10:73619785..73619793, - |
