CL:0000791: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=mature alpha-beta T cell | |name=mature alpha-beta T cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:37, 12 September 2014
| Name: | mature alpha-beta T cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A alpha-beta T cell that has a mature phenotype." [GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"mature alpha-beta T lymphocyte" EXACT [] "mature alpha-beta T-cell" EXACT [] "mature alpha-beta T-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000789(alpha-beta T cell),CL:0002419(mature T cell) |
|---|---|
| develops_from: | CL:0000790(immature alpha-beta T cell) |
Children
| is a: | CL:0000624 (CD4-positive, alpha-beta T cell),CL:0000625 (CD8-positive, alpha-beta T cell),CL:0000814 (mature NK T cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
... further results Mouse (Mus musculus)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000791 (mature alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.82e-125 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_89a89f6ab9d1294075be88468103e29c | p@chr5:35859622..35859626, + |
| 4.82e-125 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_89a89f6ab9d1294075be88468103e29c | p@chr5:35859622..35859626, + |
| 2.55e-96 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_74c95d0358be449146f55c9d305b5a35 | p@chr15:89179440..89179457, - |
| 2.55e-96 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_74c95d0358be449146f55c9d305b5a35 | p@chr15:89179440..89179457, - |
| 1.42e-94 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_921883a6ef95354ff39b1a14f008e04b | p@chr5:35854487..35854499, - |
| 1.42e-94 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_921883a6ef95354ff39b1a14f008e04b | p@chr5:35854487..35854499, - |
| 1.09e-92 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_53d8e3e3b167647b3f79e9a5a5f67aa3 | p@chr5:35854779..35854826, + |
| 1.09e-92 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_53d8e3e3b167647b3f79e9a5a5f67aa3 | p@chr5:35854779..35854826, + |
| 4.33e-92 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_a5806fb4ce49c87b3b503819158f90ac | p@chr4:103551892..103551903, - |
| 4.33e-92 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_a5806fb4ce49c87b3b503819158f90ac | p@chr4:103551892..103551903, - |
| 1.97e-90 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_515032bbe2d52b42c96e36e39f0963e5 | p@chr5:35856882..35856909, - |
| 1.97e-90 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_515032bbe2d52b42c96e36e39f0963e5 | p@chr5:35856882..35856909, - |
| 2.93e-90 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_7da0b070c6b3f17e115a1ac54147799f | p1@GTSCR1 |
| 2.93e-90 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_7da0b070c6b3f17e115a1ac54147799f | p1@GTSCR1 |
| 5.78e-88 | FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_10aae37447bb5d754ddcf7c662c8743d | p@chr7:97880779..97880793, + |
| 5.78e-88 | FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_10aae37447bb5d754ddcf7c662c8743d | p@chr7:97880779..97880793, + |
| 8.73e-88 | FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_c74053a8498c347831c69f10869b1157 | p@chr1:25255894..25255906, + |
| 8.73e-88 | FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_c74053a8498c347831c69f10869b1157 | p@chr1:25255894..25255906, + |
| 4.59e-87 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_78e03c984c6a274ff746b0b0e2f1f6a2 | p10@HNRPLL |
| 4.59e-87 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_78e03c984c6a274ff746b0b0e2f1f6a2 | p10@HNRPLL |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_208f7009d08fc1fd7989b931be57847d | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_208f7009d08fc1fd7989b931be57847d | p3@Tnfrsf25 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_208f7009d08fc1fd7989b931be57847d | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_208f7009d08fc1fd7989b931be57847d | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_208f7009d08fc1fd7989b931be57847d | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_208f7009d08fc1fd7989b931be57847d | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_208f7009d08fc1fd7989b931be57847d | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_208f7009d08fc1fd7989b931be57847d | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_208f7009d08fc1fd7989b931be57847d | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_208f7009d08fc1fd7989b931be57847d | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_208f7009d08fc1fd7989b931be57847d | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_208f7009d08fc1fd7989b931be57847d | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_208f7009d08fc1fd7989b931be57847d | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_208f7009d08fc1fd7989b931be57847d | p3@Tnfrsf25 |
| 2.98e-86 | FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_85cceca949c645b099ad4d62c900e155 | p@chr10:14611822..14611844, - |
| 2.98e-86 | FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_85cceca949c645b099ad4d62c900e155 | p@chr10:14611822..14611844, - |
| 3.57e-86 | FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_819b8b1f7886db8ef4be013df2584c98 | p@chr4:90205082..90205093, + |
| 3.57e-86 | FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_819b8b1f7886db8ef4be013df2584c98 | p@chr4:90205082..90205093, + |
| 9.89e-85 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_2d9e3cef0240272dc16876f779ec2807 | p@chr16:57162957..57162973, + |
| 9.89e-85 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_2d9e3cef0240272dc16876f779ec2807 | p@chr16:57162957..57162973, + |
| 1.01e-83 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_057e095350a5781adc09d7c5228bae3a | p@chr2:87053288..87053295, - |
| 1.01e-83 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_057e095350a5781adc09d7c5228bae3a | p@chr2:87053288..87053295, - |
| 1.1e-83 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_8fcbb017d3c5d97d1aa8708cebcfa81e | p@chr6:128299606..128299618, + |
| 1.1e-83 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_8fcbb017d3c5d97d1aa8708cebcfa81e | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_8fcbb017d3c5d97d1aa8708cebcfa81e | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_8fcbb017d3c5d97d1aa8708cebcfa81e | p@chr6:128299606..128299618, + |
| 1.69e-83 | FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_97c55e89303d69dbfb379828da3ccc98 | p@chr5:35780579..35780585, + |
| 1.69e-83 | FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_97c55e89303d69dbfb379828da3ccc98 | p@chr5:35780579..35780585, + |
| 1.02e-82 | FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_6c0d37c029acac24f88a89a5f9718556 | p@chr5:35859218..35859252, - |
| 1.02e-82 | FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_6c0d37c029acac24f88a89a5f9718556 | p@chr5:35859218..35859252, - |
| 1.33e-82 | FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_90c95de123b2546362d117690cf01540 | p@chr12:49375076..49375089, - |
| 1.33e-82 | FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_90c95de123b2546362d117690cf01540 | p@chr12:49375076..49375089, - |
| 3.02e-82 | FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_3e18616acadc27b0381bdd05afe4f686 | p@chr10:9060907..9060927, - |
| 3.02e-82 | FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_3e18616acadc27b0381bdd05afe4f686 | p@chr10:9060907..9060927, - |
| 4.05e-82 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_c9a26c8f5c96469420010cc6ee9f2bc5 | p@chr12:10561626..10561641, - |
| 4.05e-82 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_c9a26c8f5c96469420010cc6ee9f2bc5 | p@chr12:10561626..10561641, - |
| 4.31e-82 | FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_53dca8d16593b451df2f4f5f4ed990cc | p@chr7:150178764..150178778, - |
| 4.31e-82 | FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_53dca8d16593b451df2f4f5f4ed990cc | p@chr7:150178764..150178778, - |
| 5.81e-82 | FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_1c0a0581c9c5600c3f5116b9f4505fff | p@chr2:182038499..182038509, + |
| 5.81e-82 | FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_1c0a0581c9c5600c3f5116b9f4505fff | p@chr2:182038499..182038509, + |
| 1.02e-81 | FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_14716de4603a96fd316fcb0acaf609ad | p@chr4:4271366..4271377, - |
| 1.02e-81 | FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_14716de4603a96fd316fcb0acaf609ad | p@chr4:4271366..4271377, - |
| 8.22e-81 | FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_3e752f50cfd196dd1982bdab8de3a708 | p10@ATM |
| 8.22e-81 | FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_3e752f50cfd196dd1982bdab8de3a708 | p10@ATM |
| 2.22e-80 | FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_94c2b6170871450e58305fdeb24cbf84 | p@chr12:12867774..12867787, - |
| 2.22e-80 | FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_94c2b6170871450e58305fdeb24cbf84 | p@chr12:12867774..12867787, - |
| 8.6e-79 | FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_5914afa2109d90e4e79ff6a4b5b0eab1 | p@chr5:67571114..67571129, - |
| 8.6e-79 | FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_5914afa2109d90e4e79ff6a4b5b0eab1 | p@chr5:67571114..67571129, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_6b784a033c51d39b9f580c09226d1661 | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_6b784a033c51d39b9f580c09226d1661 | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_6b784a033c51d39b9f580c09226d1661 | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_6b784a033c51d39b9f580c09226d1661 | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_6b784a033c51d39b9f580c09226d1661 | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_6b784a033c51d39b9f580c09226d1661 | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_6b784a033c51d39b9f580c09226d1661 | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_6b784a033c51d39b9f580c09226d1661 | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_6b784a033c51d39b9f580c09226d1661 | p@chr8:84082784..84082795, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_6b784a033c51d39b9f580c09226d1661 | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_6b784a033c51d39b9f580c09226d1661 | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_6b784a033c51d39b9f580c09226d1661 | p@chr8:84082784..84082795, + |
| 2.56e-78 | FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_001c7500a68bbdc1ad0c1aca0c2ddad2 | p@chr6:143228788..143228799, - |
| 2.56e-78 | FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_001c7500a68bbdc1ad0c1aca0c2ddad2 | p@chr6:143228788..143228799, - |
| 2.82e-78 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_5d51215baea798752e5ed110a1d64e97 | p@chr5:123440767..123440778, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_5d51215baea798752e5ed110a1d64e97 | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_5d51215baea798752e5ed110a1d64e97 | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_5d51215baea798752e5ed110a1d64e97 | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_5d51215baea798752e5ed110a1d64e97 | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_5d51215baea798752e5ed110a1d64e97 | p@chr5:123440767..123440778, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_74985397152b1b54da953d3f78c488ca | p@chr15:27786221..27786240, - |
| 3.46e-78 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_74985397152b1b54da953d3f78c488ca | p@chr15:27786221..27786240, - |
| 4.25e-78 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_fdaefda2c32ef8250bca08dafc2a3e9d | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_fdaefda2c32ef8250bca08dafc2a3e9d | p@chr3:103672068..103672090, - |
| 4.25e-78 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_fdaefda2c32ef8250bca08dafc2a3e9d | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_fdaefda2c32ef8250bca08dafc2a3e9d | p@chr3:103672068..103672090, - |
| 5.22e-78 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_abaff3056a79a2c7709a854219248c35 | p@chr6:48634453..48634468, - |
| 5.22e-78 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_abaff3056a79a2c7709a854219248c35 | p@chr6:48634453..48634468, - |
| 6.45e-78 | FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_155f7f7b72717717d20da4a51f9853cf | p@chr7:36816941..36816949, + |
| 6.45e-78 | FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_155f7f7b72717717d20da4a51f9853cf | p@chr7:36816941..36816949, + |
| 7.86e-78 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_1dd0eaf9d89384225f4843cb81bc5140 | p5@uc007vxz.1 |
| 7.86e-78 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_1dd0eaf9d89384225f4843cb81bc5140 | p5@uc007vxz.1 |
