CL:0000039: Difference between revisions
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|located_in= | |located_in= | ||
|name=germ line cell | |name=germ line cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:28, 12 September 2014
| Name: | germ line cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544] |
| Comments: | Originally this term had some plant germ line cell children. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell) |
|---|---|
| disjoint_from: | CL:0002371(somatic cell) |
Children
| is a: | CL:0000586 (germ cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10618-108G6 (choriocarcinoma cell line:T3M-3)
- 10785-110H2 (choriocarcinoma cell line:SCH)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 10799-110I7
Mouse (Mus musculus)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10618-108G6 (choriocarcinoma cell line:T3M-3)
- 10785-110H2 (choriocarcinoma cell line:SCH)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 10799-110I7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000039 (germ line cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.99e-171 | FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_f5ddbd5f01922dd555fc619ff5088da7 | p3@DPPA3 |
| 1.99e-171 | FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_f5ddbd5f01922dd555fc619ff5088da7 | p3@DPPA3 |
| 5.52e-144 | FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_ee2a50ad21f60affac4ea971a18e56e6 | p3@TRIM60 |
| 5.52e-144 | FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_ee2a50ad21f60affac4ea971a18e56e6 | p3@TRIM60 |
| 9.03e-144 | FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_34ddb1a46a78b3b037afa03d11e67ac0 | p4@DNMT3L |
| 9.03e-144 | FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_34ddb1a46a78b3b037afa03d11e67ac0 | p4@DNMT3L |
| 6.94e-140 | FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_56a22ea39419e1816675849216fa5d2d | p2@A2ML1-AS1 |
| 6.94e-140 | FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_56a22ea39419e1816675849216fa5d2d | p2@A2ML1-AS1 |
| 1.01e-125 | FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_981352328cf8ede5c5b082353f4c15fe | p2@DPPA3 |
| 1.01e-125 | FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_981352328cf8ede5c5b082353f4c15fe | p2@DPPA3 |
| 5.61e-117 | FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_35c62b9368536839098c40bb05337131 | p1@A2ML1-AS1 |
| 5.61e-117 | FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_35c62b9368536839098c40bb05337131 | p1@A2ML1-AS1 |
| 7.13e-117 | FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_5ea2b86d0618f26a0b99ca8df95ebbdb | p1@TRIM60 |
| 7.13e-117 | FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_5ea2b86d0618f26a0b99ca8df95ebbdb | p1@TRIM60 |
| 9.06e-117 | FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_37d7d09edd9c83527bf8a691abb3a66b | p2@TRIM60 |
| 9.06e-117 | FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_37d7d09edd9c83527bf8a691abb3a66b | p2@TRIM60 |
| 1.15e-116 | FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_4864cab3dbe7b5efb883161b002b7dd8 | p@chr3:9895464..9895477, - |
| 1.15e-116 | FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_4864cab3dbe7b5efb883161b002b7dd8 | p@chr3:9895464..9895477, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr1:227034858..227034868, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p5@NANOGP1 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr11:107782394..107782402, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr4:779349..779383,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr4:779349..779383, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr15:33905298..33905312, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:233989556..233989568, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr1:92406327..92406341, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:40431300..40431312, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr15:33905298..33905312, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:51883856..51883866, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr21:27478988..27478996, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:71755221..71755234, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr6:6032547..6032560, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p11@PPM1N |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:51883915..51883934, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr21:27478988..27478996, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr12:32717043..32717051, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr16:9069001..9069012, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr10:48320905..48320918,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr10:48320905..48320918, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:40431284..40431296, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p6@CNR2 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:65786044..65786055, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr6:73935150..73935162,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p3@KHDC1L |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:51883879..51883908, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:71755236..71755242, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p5@LRRC6 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr6:35511496..35511503, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p2@BX538205 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr11:107782394..107782402, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr1:227034858..227034868, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr12:32717031..32717041, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p2@BX538205 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:40431300..40431312, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:71755206..71755213, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr4:779349..779383,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr4:779349..779383, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:233989556..233989568, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr1:38709054..38709062, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr7:2309320..2309348, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:51883915..51883934, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p5@NANOGP1 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p6@LRRC6 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr10:48320905..48320918,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr10:48320905..48320918, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr16:9069001..9069012, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr1:92406327..92406341, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p11@PPM1N |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr12:32717043..32717051, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:51883856..51883866, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:65786044..65786055, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:71755221..71755234, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p6@CNR2 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr6:6032547..6032560, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p5@LRRC6 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr6:35511496..35511503,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr6:35511496..35511503, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:40431284..40431296, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr6:73935150..73935162,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p3@KHDC1L |
| 3.15e-112 | FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr21:27478934..27478945, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:71755206..71755213, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr19:51883879..51883908, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr2:71755236..71755242, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr1:38709054..38709062, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr7:2309320..2309348, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr21:27478934..27478945, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_e189d3a5102b03ec5c716a3917bcdfb3 | p@chr12:32717031..32717041, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_e189d3a5102b03ec5c716a3917bcdfb3 | p6@LRRC6 |
| 3.67e-112 | FFCP PHASE1:Hg19::chr6:35511483..35511494,+#_bafed7280364dc6dfe954461cc10eaee | p@chr6:35511483..35511494, + |
| 3.67e-112 | FFCP PHASE2:Hg19::chr6:35511483..35511494,+#_bafed7280364dc6dfe954461cc10eaee | p@chr6:35511483..35511494, + |
| 1.28e-101 | FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_63ed83ff43a2e64e8e5d052e457f9d55 | p2@DNMT3L |
| 1.28e-101 | FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_63ed83ff43a2e64e8e5d052e457f9d55 | p2@DNMT3L |
| 4.29e-101 | FFCP PHASE1:Hg19::chr19:46002982..46002998,+#_0f336ef5a999fd0701d5f0e67f8d9347 | p8@PPM1N |
| 4.29e-101 | FFCP PHASE2:Hg19::chr19:46002982..46002998,+#_0f336ef5a999fd0701d5f0e67f8d9347 | p8@PPM1N |
| 7.2e-101 | FFCP PHASE2:Hg19::chr4:188963120..188963125,+#_3834d02c192979a87b32db29697ca84b | p@chr4:188963120..188963125, + |
| 7.2e-101 | FFCP PHASE1:Hg19::chr4:188963120..188963125,+#_3834d02c192979a87b32db29697ca84b | p@chr4:188963120..188963125, + |
| 5.5e-100 | FFCP PHASE2:Hg19::chr3:48519267..48519301,-#_195953145860714a3a3d191bee35f913 | p@chr3:48519267..48519301, - |
| 5.5e-100 | FFCP PHASE1:Hg19::chr3:48519267..48519301,-#_195953145860714a3a3d191bee35f913 | p@chr3:48519267..48519301, - |
| 1.18e-92 | FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_d88ebef04cb2240edd2ba1c20a3a7733 | p1@DNMT3L |
| 1.18e-92 | FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_d88ebef04cb2240edd2ba1c20a3a7733 | p1@DNMT3L |
| 3.52e-90 | FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_856c57be9298599f5237ced41dd0e5ec | p1@DND1 |
| 3.52e-90 | FFCP PHASE2:Hg19::chr1:65612630..65612670,+#_856c57be9298599f5237ced41dd0e5ec | p@chr1:65612630..65612670, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr3:47297118..47297149,+#_856c57be9298599f5237ced41dd0e5ec | p@chr3:47297118..47297149, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr7:5447185..5447197,-#_856c57be9298599f5237ced41dd0e5ec | p23@TNRC18 |
| 3.52e-90 | FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_856c57be9298599f5237ced41dd0e5ec | p@chr5:133764015..133764029, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr12:118542383..118542415,-#_856c57be9298599f5237ced41dd0e5ec | p@chr12:118542383..118542415, - |
