FF:11855-125A1: Difference between revisions

Revision as of 09:54, 28 November 2014

Name:	Mouse CD8+ T Cells, donor1
Species:	Mouse (Mus musculus)
Library ID:	CNhs13511
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	spleen
dev stage	NA
sex	NA
age	NA
cell type	t cell, CD8+
cell line	NA
company	NA
collaboration	Kawamoto (RCAI)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004722

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13511		CAGE		DRX008815		DRR009687

Accession ID Mm9

Library id		BAM		CTSS
CNhs13511		DRZ001112		DRZ002497

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13511

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0299
1002	-0.116
1003	-0.156
1004	0
1005	0
1006	-0.163
1007	-0.036
1008	0
1009	-0.19
101	0.238
1010	0
1011	0.126
1012	0.126
1013	-0.0562
1014	-0.0874
1015	-0.0796
1016	-0.594
1017	0
1018	0
1019	0
102	0.64
1020	0
1021	0.021
1022	-0.275
1023	0.126
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.051
103	-0.0887
1030	0
1031	-1.034
1032	-0.655
1033	0.459
1034	0
1035	0
1036	0.424
1037	0
1038	-0.172
1039	-0.309
104	0
1040	-0.216
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13511

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.08878e-5
MA0003.1	MA0003.1	0.245
MA0004.1	MA0004.1	0.0544
MA0006.1	MA0006.1	0.483
MA0007.1	MA0007.1	0.379
MA0009.1	MA0009.1	0.722
MA0014.1	MA0014.1	0.504
MA0017.1	MA0017.1	0.619
MA0018.2	MA0018.2	1.35058e-6
MA0019.1	MA0019.1	0.774
MA0024.1	MA0024.1	0.951
MA0025.1	MA0025.1	0.217
MA0027.1	MA0027.1	0.973
MA0028.1	MA0028.1	3.39625e-5
MA0029.1	MA0029.1	0.206
MA0030.1	MA0030.1	0.0744
MA0031.1	MA0031.1	0.00127
MA0035.2	MA0035.2	0.829
MA0038.1	MA0038.1	0.00198
MA0039.2	MA0039.2	0.131
MA0040.1	MA0040.1	0.269
MA0041.1	MA0041.1	0.0977
MA0042.1	MA0042.1	0.383
MA0043.1	MA0043.1	0.0237
MA0046.1	MA0046.1	2.42124e-11
MA0047.2	MA0047.2	0.115
MA0048.1	MA0048.1	0.418
MA0050.1	MA0050.1	3.15153e-9
MA0051.1	MA0051.1	3.54723e-6
MA0052.1	MA0052.1	0.00527
MA0055.1	MA0055.1	0.294
MA0057.1	MA0057.1	0.945
MA0058.1	MA0058.1	0.0287
MA0059.1	MA0059.1	0.0215
MA0060.1	MA0060.1	0.00925
MA0061.1	MA0061.1	2.66576e-6
MA0062.2	MA0062.2	3.29484e-19
MA0065.2	MA0065.2	0.708
MA0066.1	MA0066.1	0.15
MA0067.1	MA0067.1	0.0114
MA0068.1	MA0068.1	0.196
MA0069.1	MA0069.1	0.884
MA0070.1	MA0070.1	0.706
MA0071.1	MA0071.1	0.972
MA0072.1	MA0072.1	0.0614
MA0073.1	MA0073.1	0.956
MA0074.1	MA0074.1	0.579
MA0076.1	MA0076.1	2.24672e-6
MA0077.1	MA0077.1	0.122
MA0078.1	MA0078.1	0.82
MA0079.2	MA0079.2	0.0503
MA0080.2	MA0080.2	5.55285e-14
MA0081.1	MA0081.1	0.00336
MA0083.1	MA0083.1	0.121
MA0084.1	MA0084.1	0.962
MA0087.1	MA0087.1	0.878
MA0088.1	MA0088.1	0.609
MA0090.1	MA0090.1	0.0221
MA0091.1	MA0091.1	0.869
MA0092.1	MA0092.1	0.762
MA0093.1	MA0093.1	0.0628
MA0099.2	MA0099.2	0.938
MA0100.1	MA0100.1	0.124
MA0101.1	MA0101.1	1.3603e-6
MA0102.2	MA0102.2	0.799
MA0103.1	MA0103.1	0.179
MA0104.2	MA0104.2	0.0483
MA0105.1	MA0105.1	3.23462e-6
MA0106.1	MA0106.1	0.528
MA0107.1	MA0107.1	8.26197e-7
MA0108.2	MA0108.2	0.00275
MA0111.1	MA0111.1	0.433
MA0112.2	MA0112.2	0.385
MA0113.1	MA0113.1	0.399
MA0114.1	MA0114.1	0.0497
MA0115.1	MA0115.1	0.312
MA0116.1	MA0116.1	0.114
MA0117.1	MA0117.1	0.107
MA0119.1	MA0119.1	0.187
MA0122.1	MA0122.1	0.416
MA0124.1	MA0124.1	0.495
MA0125.1	MA0125.1	0.131
MA0131.1	MA0131.1	0.389
MA0135.1	MA0135.1	0.827
MA0136.1	MA0136.1	1.07412e-26
MA0137.2	MA0137.2	0.0159
MA0138.2	MA0138.2	7.32612e-4
MA0139.1	MA0139.1	0.882
MA0140.1	MA0140.1	0.857
MA0141.1	MA0141.1	0.535
MA0142.1	MA0142.1	0.0875
MA0143.1	MA0143.1	0.429
MA0144.1	MA0144.1	0.119
MA0145.1	MA0145.1	0.0981
MA0146.1	MA0146.1	0.557
MA0147.1	MA0147.1	0.0199
MA0148.1	MA0148.1	0.167
MA0149.1	MA0149.1	0.127
MA0150.1	MA0150.1	0.595
MA0152.1	MA0152.1	0.542
MA0153.1	MA0153.1	4.10783e-6
MA0154.1	MA0154.1	0.608
MA0155.1	MA0155.1	0.372
MA0156.1	MA0156.1	1.56024e-28
MA0157.1	MA0157.1	0.00148
MA0159.1	MA0159.1	0.36
MA0160.1	MA0160.1	0.996
MA0162.1	MA0162.1	0.73
MA0163.1	MA0163.1	0.0107
MA0164.1	MA0164.1	0.346
MA0258.1	MA0258.1	0.0955
MA0259.1	MA0259.1	0.188

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13511

Novel motif	Logo	P-value
1	1	0.465
10	10	0.0326
100	100	0.498
101	101	0.969
102	102	0.431
103	103	0.552
104	104	0.932
105	105	0.696
106	106	0.715
107	107	0.323
108	108	0.852
109	109	0.506
11	11	0.47
110	110	0.138
111	111	0.205
112	112	0.113
113	113	0.34
114	114	0.382
115	115	0.826
116	116	0.637
117	117	2.10715e-4
118	118	0.0875
119	119	0.568
12	12	0.361
120	120	0.137
121	121	0.313
122	122	0.956
123	123	0.558
124	124	0.757
125	125	0.568
126	126	0.464
127	127	0.87
128	128	0.42
129	129	0.377
13	13	0.106
130	130	0.867
131	131	0.357
132	132	0.997
133	133	0.673
134	134	0.853
135	135	0.817
136	136	0.473
137	137	0.25
138	138	0.385
139	139	0.437
14	14	0.512
140	140	0.309
141	141	0.23
142	142	0.246
143	143	5.31175e-4
144	144	0.429
145	145	0.137
146	146	0.918
147	147	0.572
148	148	0.243
149	149	0.26
15	15	0.113
150	150	0.55
151	151	0.353
152	152	0.375
153	153	0.353
154	154	0.182
155	155	0.1
156	156	0.187
157	157	0.621
158	158	0.00902
159	159	0.732
160	160	0.401
161	161	0.105
162	162	0.186
163	163	0.549
164	164	0.0336
165	165	0.928
166	166	0.358
167	167	0.089
168	168	0.548
169	169	0.887
17	17	0.895
18	18	0.29
19	19	0.131
2	2	0.0258
20	20	0.0136
21	21	0.0509
22	22	0.722
23	23	0.792
24	24	0.413
25	25	0.168
26	26	0.292
27	27	0.74
28	28	0.258
29	29	0.0349
3	3	0.477
30	30	0.104
31	31	0.643
32	32	0.11
33	33	0.112
34	34	0.38
35	35	0.0317
36	36	0.068
37	37	0.189
38	38	0.7
39	39	0.463
4	4	0.772
40	40	0.413
41	41	0.203
42	42	0.293
43	43	0.644
44	44	0.37
45	45	0.3
46	46	0.56
47	47	0.819
48	48	0.487
49	49	0.211
5	5	0.158
50	50	0.448
51	51	0.75
52	52	0.172
53	53	0.679
54	54	0.623
55	55	0.923
56	56	0.936
57	57	0.807
58	58	0.301
59	59	0.558
6	6	0.793
60	60	0.885
61	61	0.149
62	62	0.0875
63	63	0.942
64	64	0.864
65	65	0.58
66	66	0.314
67	67	0.851
68	68	0.537
69	69	0.97
7	7	0.493
70	70	0.0275
71	71	0.11
72	72	0.736
73	73	0.252
74	74	0.807
75	75	0.00989
76	76	0.0207
77	77	0.0475
78	78	0.0337
79	79	0.829
8	8	0.548
80	80	0.191
81	81	0.905
82	82	0.224
83	83	0.15
84	84	0.944
85	85	0.864
86	86	0.118
87	87	0.808
88	88	0.386
89	89	0.74
9	9	0.939
90	90	0.0443
91	91	0.81
92	92	0.506
93	93	0.0418
94	94	0.491
95	95	0.279
96	96	0.34
97	97	0.488
98	98	0.523
99	99	0.0243

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13511

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000103 mouse sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:130815703..130815721,+!p2@Lef1!2.29!230.22!Lef1;;chr11:52096066..52096081,-!p2@Tcf7!2.25!211.40!Tcf7;;chr4:48058129..48058179,+!p2@Nr4a3!2.04!198.30!Nr4a3;;chr17:51971932..51971958,-!p2@Satb1!2.01!136.45!Satb1;;chr4:48058047..48058062,+!p1@Nr4a3!1.95!132.76!Nr4a3;;chr4:48058016..48058032,+!p3@Nr4a3!1.91!133.43!Nr4a3;;chr1:38721792..38721845,-!p1@Aff3!1.91!98.14!Aff3;;chr1:52065508..52065522,+!p2@Stat4!1.90!91.75!Stat4;;chr11:11590140..11590187,+!p3@Ikzf1!1.86!85.37!Ikzf1;;chr8:87502608..87502623,-!p1@Junb!1.85!1067.43!Junb;;chr5:134720044..134720103,-!p6@Gtf2i!1.84!67.55!Gtf2i;;chr4:134676555..134676575,+!p2@Runx3!1.82!64.87!Runx3;;chr11:11584970..11585030,+!p2@Ikzf1!1.81!90.41!Ikzf1;;chr18:3281725..3281740,-!p3@Crem!1.80!77.64!Crem;;chr18:3281750..3281776,-!p2@Crem!1.78!117.30!Crem;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.77!73.60!Zbtb11;;chr11:52095821..52095836,-!p3@Tcf7!1.76!57.14!Tcf7;;chr15:101097270..101097290,+!p1@Nr4a1!1.73!514.56!Nr4a1;;chr17:51971960..51971979,-!p1@Satb1!1.72!68.23!Satb1;;chr11:100683839..100683890,-!p2@Stat5b!1.70!112.59!Stat5b;;chr11:11590117..11590138,+!p4@Ikzf1!1.69!48.06!Ikzf1;;chr1:36364590..36364608,+!p1@Arid5a!1.65!421.13!Arid5a;;chr6:99216488..99216534,-!p2@Foxp1!1.64!117.30!Foxp1;;chr1:52065530..52065548,+!p3@Stat4!1.62!41.00!Stat4;;chr11:52096804..52096896,-!p1@Tcf7!1.61!305.85!Tcf7;;chr1:52065454..52065495,+!p1@Stat4!1.54!55.12!Stat4;;chr11:11585912..11585950,+!p6@Ikzf1!1.54!43.02!Ikzf1;;chr2:56967334..56967366,-!p1@Nr4a2!1.53!65.20!Nr4a2;;chr11:98407264..98407295,-!p1@Ikzf3!1.52!31.93!Ikzf3;;chr2:126501799..126501832,-!p4@Gabpb1!1.50!30.92!Gabpb1;;chr8:74842952..74842970,+!p1@Klf2!1.49!1886.83!Klf2;;chr4:63064364..63064384,-!p1@Akna!1.47!80.66!Akna;;chr9:32503590..32503680,+!p1@Ets1!1.45!941.73!Ets1;;chr3:130813200..130813252,+!p1@Lef1!1.45!117.97!Lef1;;chr13:30841099..30841116,+!p1@Irf4!1.45!42.01!Irf4;;chr14:79915425..79915501,+!p1@Elf1!1.44!226.86!Elf1;;chr11:53583544..53583559,+!p1@Irf1!1.42!409.03!Irf1;;chr17:71200529..71200556,-!p1@Tgif1!1.42!387.85!Tgif1;;chr12:109242266..109242295,-!p1@Bcl11b!1.42!201.99!Bcl11b;;chr7:31206743..31206761,+!p1@Nfkbid!1.42!33.95!Nfkbid;;chr18:5594197..5594228,+!p7@Zeb1!1.41!24.53!Zeb1;;chr18:75527009..75527027,+!p1@Smad7!1.40!481.62!Smad7;;chr4:124805061..124805087,-!p1@Zc3h12a!1.40!73.60!Zc3h12a;;chr4:134708451..134708469,+!p1@Runx3!1.40!42.01!Runx3;;chr17:51971991..51972003,-!p4@Satb1!1.40!24.20!Satb1;;chr2:173044380..173044432,-!p1@Zbp1!1.38!54.11!Zbp1;;chr10:20880629..20880683,-!p1@Myb!1.33!57.81!Myb;;chr12:86814833..86814846,+!p1@Fos!1.32!450.37!Fos;;chr18:75527210..75527215,+!p4@Smad7!1.32!33.27!Smad7;;chr11:98407234..98407259,-!p2@Ikzf3!1.32!19.83!Ikzf3;;chr12:85534957..85535017,-!p2@C130039O16Rik!1.28!89.06!C130039O16Rik;;chr9:118387300..118387317,+!p1@Eomes!1.28!18.15!Eomes;;chr11:11585678..11585745,+!p5@Ikzf1!1.25!24.20!Ikzf1;;chr12:85559762..85559778,-!p5@C130039O16Rik!1.23!25.88!C130039O16Rik;;chr12:87027663..87027678,+!p2@Batf!1.23!15.80!Batf;;chr5:92391466..92391471,+!p2@Thap6!1.22!22.52!Thap6;;chr11:11590085..11590106,+!p7@Ikzf1!1.22!15.46!Ikzf1;;chr2:126501847..126501876,-!p5@Gabpb1!1.21!17.14!Gabpb1;;chr11:11586218..11586285,+!p1@Ikzf1!1.19!46.04!Ikzf1;;chrX:137077653..137077669,-!p3@Tsc22d3!1.18!63.19!Tsc22d3;;chr16:92826249..92826325,-!p1@Runx1!1.18!34.95!Runx1;;chr4:48058102..48058110,+!p5@Nr4a3!1.18!15.80!Nr4a3;;chr8:108583550..108583595,+!p2@Nfatc3!1.17!62.51!Nfatc3;;chr10:13685585..13685645,+!p2@Hivep2!1.17!47.73!Hivep2;;chr7:19895354..19895369,-!p1@Fosb!1.17!19.16!Fosb;;chr17:51972530..51972571,-!p7@Satb1!1.16!13.44!Satb1;;chr11:98407142..98407159,-!p5@Ikzf3!1.15!13.11!Ikzf3;;chr11:96976641..96976646,-!p1@Tbx21!1.14!12.77!Tbx21;;chr3:130815472..130815497,+!p6@Lef1!1.13!12.44!Lef1;;chr11:100721761..100721851,+!p1@Stat5a!1.12!90.07!Stat5a;;chrX:137077608..137077619,-!p6@Tsc22d3!1.11!16.13!Tsc22d3;;chr18:80904854..80904919,-!p2@Nfatc1!1.10!137.13!Nfatc1;;chr2:168415815..168415872,-!p1@Nfatc2!1.09!62.18!Nfatc2;;chr17:45692676..45692695,+!p2@Nfkbie!1.09!22.85!Nfkbie;;chr12:85560016..85560038,-!p6@C130039O16Rik!1.09!11.43!C130039O16Rik;;chr3:130813254..130813263,+!p4@Lef1!1.08!11.09!Lef1;;chr6:99216375..99216395,-!p5@Foxp1!1.08!11.09!Foxp1;;chr10:67000609..67000625,+!p1@Egr2!1.07!24.87!Egr2;;chr7:19895384..19895399,-!p2@Fosb!1.07!15.12!Fosb;;chr11:100800641..100800669,-!p3@Stat3!1.06!18.15!Stat3;;chr11:100683794..100683805,-!p4@Stat5b!1.06!10.42!Stat5b;;chr17:71201572..71201601,-!p10@Tgif1!1.06!10.42!Tgif1;;chr1:64579145..64579168,+!p6@Creb1!1.06!10.42!Creb1;;chr17:84587279..84587294,-!p1@Zfp36l2!1.05!1090.96!Zfp36l2;;chr19:46379199..46379301,+!p1@Nfkb2!1.05!58.48!Nfkb2;;chr17:45692642..45692663,+!p1@Nfkbie!1.05!32.94!Nfkbie;;chr2:91077034..91077078,-!p2@Ddb2!1.05!23.19!Ddb2;;chr1:87546602..87546617,+!p2@Sp100!1.05!12.10!Sp100;;chr9:51021788..51021802,+!p1@Pou2af1!1.04!11.76!Pou2af1;;chr7:31208285..31208312,+!p3@Nfkbid!1.04!11.09!Nfkbid;;chr9:32348943..32349001,-!p1@Fli1!1.03!81.00!Fli1;;chr17:84587167..84587239,-!p2@Zfp36l2!1.03!33.95!Zfp36l2;;chr11:98407210..98407221,-!p7@Ikzf3!1.03!9.75!Ikzf3;;chr11:98407340..98407359,-!p4@Ikzf3!1.03!9.75!Ikzf3;;chr6:99385340..99385362,-!p11@Foxp1!1.03!9.75!Foxp1;;chr12:56593574..56593592,-!p1@Nfkbia!1.02!494.73!Nfkbia;;chr18:75527030..75527055,+!p2@Smad7!1.02!59.82!Smad7;;chr11:23670953..23671028,-!p1@Rel!1.02!54.78!Rel;;chr19:26681929..26681987,+!p4@Smarca2!1.02!54.45!Smarca2;;chrX:98449898..98449913,+!p2@Foxo4!1.02!31.26!Foxo4;;chr4:48064302..48064316,+!p11@Nr4a3!1.02!9.41!Nr4a3;;chr7:71083729..71083742,-!p4@Klf13!1.01!16.47!Klf13;;chr2:173044357..173044377,-!p2@Zbp1!1.01!13.44!Zbp1;;chr12:109241728..109241781,-!p2@Bcl11b!1.00!9.75!Bcl11b;;chr8:124984566..124984595,-!p1@Snai3!0.99!13.78!Snai3;;chr2:91076997..91077012,-!p4@Ddb2!0.99!8.74!Ddb2;;chr17:51972603..51972624,-!p9@Satb1!0.99!8.74!Satb1;;chrX:137077716..137077734,-!p1@Tsc22d3!0.98!63.52!Tsc22d3;;chr17:71202982..71202985,-!p7@Tgif1!0.98!10.76!Tgif1;;chr18:3337249..3337274,-!p17@Crem!0.97!8.40!Crem;;chr5:108155007..108155034,-!p1@Gfi1!0.97!8.40!Gfi1;;chr5:65194752..65194769,+!p1@Klf3!0.96!277.61!Klf3;;chr1:52176315..52176343,+!p1@Stat1!0.96!120.99!Stat1;;chr7:71083428..71083518,-!p3@Klf13!0.96!64.53!Klf13;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.96!38.99!Zbtb11;;chr3:87945895..87945946,+!p2@Mef2d!0.96!26.89!Mef2d;;chr17:31701800..31701818,+!p2@Pknox1!0.96!21.17!Pknox1;;chr6:99216360..99216372,-!p8@Foxp1!0.96!8.07!Foxp1;;chr11:98407164..98407177,-!p8@Ikzf3!0.96!8.07!Ikzf3;;chr11:52070478..52070500,-!p10@Tcf7!0.96!8.07!Tcf7;;chr4:32325688..32325777,+!p1@Bach2!0.95!71.25!Bach2;;chr5:140267510..140267555,+!p2@Mafk!0.95!19.16!Mafk;;chr5:22940353..22940372,+!p3@Mll5!0.94!15.12!Mll5;;chr11:23670750..23670789,-!p2@Rel!0.94!14.79!Rel;;chr4:48064149..48064169,+!p9@Nr4a3!0.94!7.73!Nr4a3;;chr4:124805092..124805135,-!p2@Zc3h12a!0.93!33.27!Zc3h12a;;chr5:104182963..104182982,+!p5@Aff1!0.93!16.47!Aff1;;chr10:20880731..20880775,-!p2@Myb!0.93!16.13!Myb;;chr15:57526345..57526392,+!p3@Zhx2!0.93!14.12!Zhx2;;chr12:77470718..77470752,-!p4@Zbtb25!0.93!10.76!Zbtb25;;chr13:5860776..5860796,+!p1@Klf6!0.92!185.86!Klf6;;chr3:135354384..135354443,-!p1@Nfkb1!0.92!47.05!Nfkb1;;chr11:62272010..62272050,-!p2@Ncor1!0.92!24.53!Ncor1;;chr11:98407370..98407395,-!p3@Ikzf3!0.92!7.39!Ikzf3;;chr11:11590188..11590200,+!p8@Ikzf1!0.92!7.39!Ikzf1;;chr17:51965903..51965926,-!p5@Satb1!0.92!7.39!Satb1;;chr16:55822241..55822258,-!p1@Nfkbiz!0.91!233.59!Nfkbiz;;chr1:74634691..74634719,-!p2@Zfp142!0.91!18.49!Zfp142;;chr17:51972438..51972463,-!p8@Satb1!0.91!7.06!Satb1;;chr18:3281015..3281028,-!p18@Crem!0.91!7.06!Crem;;chr4:48058196..48058205,+!p4@Nr4a3!0.91!7.06!Nr4a3;;chr4:48061898..48061935,+!p8@Nr4a3!0.91!7.06!Nr4a3;;chr12:85559785..85559840,-!p1@C130039O16Rik!0.90!96.80!C130039O16Rik;;chr13:44829403..44829438,+!p11@Jarid2!0.90!8.07!Jarid2;;chr7:46773162..46773172,+!p2@Zfp619!0.89!11.76!Zfp619;;chr18:80909801..80909819,-!p1@Nfatc1!0.88!41.00!Nfatc1;;chr4:32325955..32325971,+!p3@Bach2!0.88!8.74!Bach2;;chr17:71201096..71201114,-!p6@Tgif1!0.88!7.73!Tgif1;;chr4:48064251..48064268,+!p12@Nr4a3!0.87!6.39!Nr4a3;;chr11:52070502..52070527,-!p7@Tcf7!0.87!6.39!Tcf7;;chr2:9800207..9800234,-!p1@Gata3!0.86!20.17!Gata3;;chr10:13686074..13686090,+!p9@Hivep2!0.86!7.06!Hivep2;;chr9:118387969..118387984,+!p2@Eomes!0.85!6.05!Eomes;;chr3:52072329..52072346,+!p1@Foxo1!0.84!97.47!Foxo1;;chr12:77471524..77471607,+!p1@Zbtb1!0.84!80.66!Zbtb1;;chrX:45807329..45807370,-!p1@Elf4!0.84!43.69!Elf4;;chr14:79915521..79915539,+!p5@Elf1!0.83!7.06!Elf1;;chr3:130815382..130815401,+!p14@Lef1!0.83!5.71!Lef1;;chr11:11590205..11590216,+!p9@Ikzf1!0.83!5.71!Ikzf1;;chr11:52096750..52096772,-!p4@Tcf7!0.82!9.07!Tcf7;;chr5:32438894..32438908,+!p2@Fosl2!0.81!12.10!Fosl2;;chr5:134741947..134741948,-!p9@Gtf2i!0.81!8.74!Gtf2i;;chr4:48057987..48057996,+!p7@Nr4a3!0.81!6.39!Nr4a3;;chr7:71083748..71083819,-!p1@Klf13!0.80!194.93!Klf13;;chr6:86619104..86619119,-!p1@Mxd1!0.80!46.72!Mxd1;;chr1:133904217..133904250,+!p5@Elk4!0.80!18.49!Elk4;;chr18:75528166..75528170,+!p3@Smad7!0.80!14.45!Smad7;;chr17:84587077..84587097,-!p4@Zfp36l2!0.80!7.06!Zfp36l2;;chr12:109241804..109241823,-!p5@Bcl11b!0.80!5.38!Bcl11b;;chr8:87502423..87502439,-!p4@Junb!0.80!5.38!Junb;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!0.80!5.38!Sp140;;chr3:130813833..130813848,+!p16@Lef1!0.80!5.38!Lef1;;chr5:140267476..140267493,+!p1@Mafk!0.79!31.59!Mafk;;chr1:64579555..64579570,+!p3@Creb1!0.79!26.22!Creb1;;chr4:6917606..6917681,-!p1@Tox!0.79!23.53!Tox;;chr1:133904901..133904934,+!p3@Elk4!0.78!15.80!Elk4;;chr1:162836606..162836631,+!p2@Rc3h1!0.78!14.79!Rc3h1;;chr2:168415791..168415802,-!p5@Nfatc2!0.78!5.04!Nfatc2;;chr4:134708909..134708939,+!p3@Runx3!0.78!5.04!Runx3;;chr17:51972400..51972428,-!p11@Satb1!0.78!5.04!Satb1;;chr5:22940320..22940331,+!p2@Mll5!0.77!15.80!Mll5;;chr13:5860872..5860883,+!p3@Klf6!0.77!10.42!Klf6;;chr12:119539843..119539899,-!p1@Sp4!0.76!27.90!Sp4;;chr6:47785797..47785823,+!p2@Zfp398!0.76!23.53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ax!0.51!3.36!Max;;chr3:130813557..130813582,+!p5@Lef1!0.51!2.69!Lef1;;chr17:21587325..21587361,+!p1@Zfp51!0.50!16.80!Zfp51;;chr2:72818978..72818997,-!p4@Sp3!0.50!12.10!Sp3;;chr4:133276698..133276743,-!p6@Arid1a!0.50!7.39!Arid1a;;chrX:45947746..45947762,-!p2@Zfp280c!0.50!5.38!Zfp280c;;chr4:102792039..102792052,+!p7@Mier1!0.50!3.36!Mier1;;chr2:91490176..91490193,-!p2@Zfp408!0.50!3.02!Zfp408;;chr9:44689360..44689406,-!p1@Mll1!0.49!104.19!Mll1;;chr5:142877438..142877486,+!p1@Foxk1!0.49!103.18!Foxk1;;chr14:52899256..52899305,+!p1@Tox4!0.49!71.59!Tox4;;chr15:25914152..25914206,+!p1@Zfp622!0.49!66.88!Zfp622;;chr10:127080031..127080090,+!p1@Stat6!0.49!60.83!Stat6;;chr8:108583462..108583523,+!p1@Nfatc3!0.49!51.76!Nfatc3;;chr4:133310237..133310293,-!p2@Arid1a!0.49!35.29!Arid1a;;chr6:47870583..47870635,+!p1@Zfp212!0.49!34.28!Zfp212;;chr19:28085485..28085544,-!p5@Rfx3!0.49!10.42!Rfx3;;chr13:5860740..5860747,+!p4@Klf6!0.49!5.38!Klf6;;chr5:147760370..147760377,+!p6@Gtf3a!0.49!3.70!Gtf3a;;chr12:100802113..100802127,-!p5@Foxn3!0.49!3.02!Foxn3;;chr11:98798983..98799049,+!p1@Rara!0.48!68.90!Rara;;chr5:134790384..134790418,-!p2@Gtf2i!0.48!35.63!Gtf2i;;chr8:108160490..108160512,+!p2@Ctcf!0.48!22.52!Ctcf;;chr3:94641624..94641645,+!p2@Pogz!0.48!18.15!Pogz;;chr13:37917887..37917913,+!p1@Rreb1!0.48!17.81!Rreb1;;chr18:36441119..36441158,+!p2@Pura!0.48!6.05!Pura;;chr6:134780163..134780197,+!p2@Crebl2!0.48!5.71!Crebl2;;chr8:81552528..81552553,+!p6@Zfp827!0.48!3.70!Zfp827;;chr7:134592574..134592591,-!p2@Zfp689!0.48!3.36!Zfp689;;chr7:134519473..134519502,-!p3@Zfp747!0.48!3.02!Zfp747;;chr1:133903955..133903969,+!p10@Elk4!0.48!2.69!Elk4;;chr16:55838940..55838966,-!p5@Nfkbiz!0.48!2.35!Nfkbiz;;chr17:71201226..71201233,-!p16@Tgif1!0.48!2.02!Tgif1;;chr1:87497247..87497279,+!p2@Gm2427,p2@Sp140!0.48!2.02!Sp140;;chr2:56965464..56965474,-!p12@Nr4a2!0.48!2.02!Nr4a2;;chr3:130815455..130815467,+!p10@Lef1!0.48!2.02!Lef1;;chr4:32325910..32325921,+!p8@Bach2!0.48!2.02!Bach2;;chr3:130813268..130813275,+!p12@Lef1!0.48!2.02!Lef1;;chr10:20881160..20881175,-!p4@Myb!0.48!2.02!Myb;;chr12:109241897..109241915,-!p6@Bcl11b!0.48!2.02!Bcl11b;;chr11:98407448..98407455,-!p12@Ikzf3!0.48!2.02!Ikzf3;;chr8:87502350..87502362,-!p2@Junb!0.48!2.02!Junb;;chr12:77470660..77470671,-!p8@Zbtb25!0.48!2.02!Zbtb25;;chr9:30837968..30838036,+!p1@Zbtb44!0.47!46.38!Zbtb44;;chr7:134170660..134170711,-!p6@Maz!0.47!14.79!Maz;;chr15:57526206..57526241,+!p2@Zhx2!0.47!8.40!Zhx2;;chr14:79881330..79881415,+!p3@Elf1!0.47!8.40!Elf1;;chr5:104183237..104183248,+!p7@Aff1!0.47!3.70!Aff1;;chr11:3191741..3191769,+!p5@Patz1!0.47!2.69!Patz1;;chr8:72520162..72520197,-!p4@Gatad2a!0.46!13.11!Gatad2a;;chr2:92886297..92886329,-!p1@Prdm11!0.46!11.43!Prdm11;;chr19:28085586..28085622,-!p3@Rfx3!0.46!10.76!Rfx3;;chr1:181733737..181733755,-!p2@Ahctf1!0.46!7.73!Ahctf1;;chr2:166888481..166888548,-!p3@Znfx1!0.46!6.39!Znfx1;;chr19:46380235..46380277,+!p3@Nfkb2!0.46!5.04!Nfkb2;;chr15:25914217..25914232,+!p3@Zfp622!0.46!4.37!Zfp622;;chr17:46520492..46520515,+!p4@Zfp318!0.46!3.02!Zfp318;;chr4:87679181..87679192,-!p10@Mllt3!0.46!3.02!Mllt3;;chr15:79178013..79178028,+!p3@Maff!0.46!2.69!Maff;;chr15:75799634..75799645,+!p4@Zfp707!0.46!2.35!Zfp707;;chr19:5637736..5637766,+!p1@Rela!0.45!68.90!Rela;;chr10:80599279..80599353,+!p1@Zbtb7a!0.45!45.71!Zbtb7a;;chr5:123844791..123844835,+!p1@Mlxip!0.45!43.36!Mlxip;;chr7:25862248..25862354,+!p1@Zfp574!0.45!41.34!Zfp574;;chr2:156665817..156665877,+!p1@Tgif2!0.45!15.80!Tgif2;;chr3:135354289..135354334,-!p3@Nfkb1!0.45!12.44!Nfkb1;;chr12:77471463..77471495,+!p3@Zbtb1!0.45!7.06!Zbtb1;;chr4:87679193..87679219,-!p5@Mllt3!0.45!6.39!Mllt3;;chr16:3744162..3744180,+!p2@Zfp263!0.45!6.39!Zfp263;;chr10:30375579..30375616,-!p3@Ncoa7!0.45!5.38!Ncoa7;;chr13:59924173..59924194,-!p4@Zcchc6!0.45!3.70!Zcchc6;;chr17:44873393..44873418,-!p4@Runx2!0.45!3.70!Runx2;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.45!3.36!Ncoa4;;chr12:32635051..32635062,-!p2@Hbp1!0.45!3.02!Hbp1;;chr19:9016729..9016740,+!p6@Mta2!0.45!2.35!Mta2;;chr6:92041522..92041531,+!p7@Nr2c2!0.45!2.35!Nr2c2;;chr3:51081233..51081365,-!p1@Elf2!0.44!51.76!Elf2;;chr14:79880971..79880992,+!p2@Elf1!0.44!31.26!Elf1;;chr4:94718861..94718872,-!p2@Jun!0.44!18.49!Jun;;chr14:19071466..19071550,-!p1@Nr1d2!0.44!16.47!Nr1d2;;chr5:65194602..65194613,+!p3@Klf3!0.44!10.42!Klf3;;chr12:77470507..77470572,-!p2@Zbtb25!0.44!9.07!Zbtb25;;chr2:128769696..128769712,-!p2@Zc3h8!0.44!7.39!Zc3h8;;chr12:85534778..85534812,-!p3@C130039O16Rik!0.44!6.72!C130039O16Rik;;chr5:125342568..125342602,+!p2@Zfp664!0.44!3.36!Zfp664;;chr9:72379740..72379757,+!p7@Rfx7!0.44!2.02!Rfx7;;chr11:69393894..69393921,+!p1@Trp53!0.43!223.84!Trp53;;chr17:34168732..34168766,+!p1@Rxrb!0.43!64.87!Rxrb;;chr11:106993428..106993480,-!p1@Bptf!0.43!63.19!Bptf;;chr7:13420322..13420401,+!p1@Zfp110!0.43!48.40!Zfp110;;chr3:152058955..152059023,+!p1@Gm8261,p1@Zzz3!0.43!30.25!Zzz3;;chr17:25152711..25152736,-!p1@Cramp1l!0.43!23.86!Cramp1l;;chr10:20032330..20032345,+!p3@Bclaf1!0.43!11.09!Bclaf1;;chr8:72520139..72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@Myb!0.22!0.67!Myb;;chr10:66998241..66998263,+!p2@Egr2!0.22!0.67!Egr2;;chr11:23670864..23670877,-!p5@Rel!0.22!0.67!Rel;;chr11:62271419..62271432,-!p26@Ncor1!0.22!0.67!Ncor1;;chr16:92826338..92826347,-!p6@Runx1!0.22!0.67!Runx1;;chr16:95923706..95923717,+!p6@Ets2!0.22!0.67!Ets2;;chr15:81494404..81494415,+!p2@L3mbtl2!0.22!0.67!L3mbtl2;;chr18:76400957..76400968,+!p12@Smad2!0.22!0.67!Smad2;;chr18:84256138..84256150,-!p7@Tshz1!0.22!0.67!Tshz1;;chr16:92826180..92826191,-!p5@Runx1!0.22!0.67!Runx1;;chr17:44873311..44873322,-!p13@Runx2!0.22!0.67!Runx2;;chr19:46380346..46380360,+!p6@Nfkb2!0.22!0.67!Nfkb2;;chr18:3280995..3281013,-!p23@Crem!0.22!0.67!Crem;;chr3:58219238..58219246,+!p3@Tsc22d2!0.22!0.67!Tsc22d2;;chr2:9800094..9800108,-!p3@Gata3!0.22!0.67!Gata3;;chr4:63064303..63064308,-!p9@Akna!0.22!0.67!Akna;;chr3:130813586..130813604,+!p7@Lef1!0.22!0.67!Lef1;;chr8:77540157..77540170,+!p3@Hmgxb4!0.22!0.67!Hmgxb4;;chr4:40917988..40918060,+!p1@Nfx1!0.21!100.16!Nfx1;;chr5:9161692..9161762,-!p1@Dmtf1!0.21!64.19!Dmtf1;;chr5:138187195..138187255,+!p1@Tsc22d4!0.21!61.84!Tsc22d4;;chr7:30880169..30880211,+!p1@Zfp260!0.21!47.05!Zfp260;;chr11:82577834..82577875,+!p1@Zfp830!0.21!28.90!Zfp830;;chr16:84835605..84835666,+!p1@Gabpa!0.21!23.19!Gabpa;;chr13:67654035..67654112,-!p1@Zfp748!0.21!21.17!Zfp748;;chr2:33324013..33324092,-!p1@Zbtb43!0.21!19.16!Zbtb43;;chr2:73730596..73730612,-!p3@Atf2,p3@LOC100047997!0.21!17.81!Atf2;;chr9:56266431..56266488,+!p2@Hmg20a!0.21!14.45!Hmg20a;;chr3:14578609..14578687,+!p1@E2f5!0.21!13.44!E2f5;;chr3:94819338..94819384,-!p1@Zfp687!0.21!13.11!Zfp687;;chr2:126501197..126501245,-!p1@Gabpb1!0.21!10.42!Gabpb1;;chr8:97856080..97856150,-!p2@Zfp319!0.21!7.73!Zfp319;;chr2:181022721..181022746,-!p2@Gmeb2!0.21!7.06!Gmeb2;;chr5:38611639..38611698,-!p1@Zbtb49!0.21!6.72!Zbtb49;;chr2:91077124..91077146,-!p3@Ddb2!0.21!3.02!Ddb2;;chr18:80348151..80348181,-!p2@Adnp2!0.21!3.02!Adnp2;;chr10:41995430..41995458,-!p3@Foxo3!0.21!3.02!Foxo3;;chr12:85658041..85658051,+!p3@Zfp410!0.21!2.69!Zfp410;;chr2:153475178..153475196,+!p1@Dnmt3b!0.21!2.35!Dnmt3b;;chr18:76400986..76401016,+!p5@Smad2!0.21!2.02!Smad2;;chr6:83391584..83391595,-!p2@Tet3!0.21!1.68!Tet3;;chr3:30993859..30993870,+!p5@Skil!0.21!1.34!Skil;;chr18:3337307..3337326,-!p14@Crem!0.21!1.01!Crem;;chr6:35083688..35083730,-!p1@Cnot4!0.20!72.26!Cnot4;;chr2:119722948..119723028,+!p1@Mga!0.20!41.00!Mga;;chr19:5424906..5425026,-!p1@Drap1!0.20!38.31!Drap1;;chr10:33670996..33671069,-!p1@Zufsp!0.20!27.90!Zufsp;;chr1:181733756..181733833,-!p1@Ahctf1!0.20!26.89!Ahctf1;;chr10:41170169..41170227,+!p1@Zbtb24!0.20!19.49!Zbtb24;;chr8:124806017..124806040,+!p2@Zfpm1!0.20!15.12!Zfpm1;;chr3:32409487..32409563,+!p1@Zfp639!0.20!9.75!Zfp639;;chr16:17233653..17233683,+!p1@Hic2!0.20!8.40!Hic2;;chr4:43575544..43575565,+!p2@Creb3!0.20!7.73!Creb3;;chr17:48061692..48061723,-!p5@Foxp4!0.20!6.05!Foxp4;;chr15:57526469..57526534,+!p1@Zhx2!0.20!4.37!Zhx2;;chr10:41996471..41996487,-!p4@Foxo3!0.20!3.36!Foxo3;;chr7:50568466..50568486,-!p2@Zfp715!0.20!3.02!Zfp715;;chr7:50817661..50817687,+!p2@LOC100505180,p2@Zfp658!0.20!2.35!Zfp658;;chr11:3190303..3190351,+!p3@Patz1!0.20!2.02!Patz1;;chr18:60720468..60720472,+!p2@Rbm22!0.20!2.02!Rbm22;;chr7:30553662..30553669,+!p2@Zfp84!0.20!1.01!Zfp84;;chr8:107793688..107793736,+!p1@Hsf4!0.20!1.01!Hsf4;;chr1:69732511..69732540,-!p2@Ikzf2!0.20!1.01!Ikzf2;;chr1:33871240..33871251,-!p5@Zfp451!0.20!1.01!Zfp451;;chr10:13685657..13685677,+!p7@Hivep2!0.20!1.01!Hivep2;;chr15:10391745..10391753,-!p3@Dnajc21!0.20!1.01!Dnajc21;;chr1:64579394..64579433,+!p1@Creb1!0.19!50.08!Creb1;;chr1:15795720..15795756,+!p1@Terf1!0.19!40.33!Terf1;;chr2:32218524..32218662,+!p1@Ciz1!0.19!31.59!Ciz1;;chr18:61336648..61336711,-!p1@Hmgxb3!0.19!26.22!Hmgxb3;;chr1:162836503..162836591,+!p1@Rc3h1!0.19!24.20!Rc3h1;;chr11:101087728..101087769,-!p1@Ezh1!0.19!20.17!Ezh1;;chr11:69393868..69393884,+!p2@Trp53!0.19!18.49!Trp53;;chr8:72498160..72498214,-!p1@Gatad2a!0.19!17.81!Gatad2a;;chrX:70587953..70587968,+!p1@Zfp275!0.19!14.45!Zfp275;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs13511
-|library_id_phase_based=1:CNhs13511
+|library_id_phase_based=2:CNhs13511
 |name=Mouse CD8+ T Cells, donor1
 |namespace=
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13511,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0.604749072842569,0.525389071779607,0,-0.00300755285937959,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.287619019437865,0,0,0,0,0,0,0,0,0,0,0,0,0.0629184742119845,-0.432585843900062,0,0,0,0,0,0.0386093076707986,-0.0549998448876231,0.21914831785892,-0.984211366477826,-0.269868638010351,0.125836948423969,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,-0.0641712819243906,0.361172842256497,-0.158091042771083,-0.0541512133378055,0,0,-0.098514232005992,0,0,0,-0.0293745709850989,0.177658625005243,-0.0705258089609622,-0.0788315948399074,0,0,0,0,0,0,0.0422438334647455,-0.123425140312418,0.451100918646534,0,0,0,0.125502390121507,0

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FF:11855-125A1: Difference between revisions

From FANTOM5_SSTAR

Revision as of 09:54, 28 November 2014

CNhs13511

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0