FFCP PHASE1:Hg19::chr6:32489707..32489737,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=3127 | |EntrezGene=entrezgene:3127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | ||
|HGNC=4953 | |HGNC=HGNC:4953 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q29973,Q30009 | |UniProt=uniprot:Q29973,uniprot:Q30009 | ||
|association_with_transcript=96bp_to_M16086,M30182_5end | |association_with_transcript=96bp_to_M16086,M30182_5end | ||
|cluster_id=chr6:32489707..32489737,- | |||
|description=CAGE_peak_6_at_HLA-DRB5_5end | |description=CAGE_peak_6_at_HLA-DRB5_5end | ||
|id=chr6:32489707..32489737,- | |id=chr6:32489707..32489737,- | ||
Revision as of 00:24, 31 July 2015
| Short description: | p6@HLA-DRB5 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_HLA-DRB5_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 96bp_to_M16086, M30182_5end |
| EntrezGene: | 3127 |
| HGNC: | 4953 |
| UniProt: | Q29973Q30009 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@HLA-DRB5 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| macrophage dendritic cell progenitor | 4.17e-41 | 61 |
| granulocyte monocyte progenitor cell | 5.86e-37 | 67 |
| monopoietic cell | 1.44e-35 | 59 |
| monocyte | 1.44e-35 | 59 |
| monoblast | 1.44e-35 | 59 |
| promonocyte | 1.44e-35 | 59 |
| defensive cell | 7.30e-34 | 48 |
| phagocyte | 7.30e-34 | 48 |
| conventional dendritic cell | 1.83e-32 | 8 |
| leukocyte | 5.23e-32 | 136 |
Showing 1 to 10 of 34 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 5.99e-32 | 76 |
| bone element | 3.25e-29 | 82 |
| hematopoietic system | 6.05e-28 | 98 |
| blood island | 6.05e-28 | 98 |
| immune system | 2.50e-27 | 93 |
| skeletal element | 3.96e-26 | 90 |
| hemolymphoid system | 8.32e-25 | 108 |
| skeletal system | 5.82e-23 | 100 |
| musculoskeletal system | 1.65e-11 | 167 |
| lateral plate mesoderm | 2.16e-11 | 203 |
Showing 1 to 10 of 11 entries
