FFCP PHASE1:Mm9::chr8:108861829..108861880,-: Difference between revisions
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{{FFCP|EntrezGene=58994|HGNC=|UniProt=Q9JJY3|association_with_transcript=7bp_to_NM_021491,uc009nfy.1,uc009nfz.1_5end|description=CAGE_peak_1_at_Smpd3_5end|id=chr8:108861829..108861880,-|ontology_enrichment_celltype=CL:0000540!1.62e-13!33;CL:0000047!1.62e-13!33;CL:0000031!1.62e-13!33;CL:0000404!1.62e-13!33;CL:0002319!5.99e-11!43;CL:0000393!1.33e-10!39;CL:0000211!1.33e-10!39;CL:0000221!2.40e-10!44;CL:0000133!2.40e-10!44;CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23;CL:0000055!3.36e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.25e-13,33;CL:0000047,1.25e-13,33;CL:0000031,1.25e-13,33;CL:0000404,1.25e-13,33;CL:0000393,1.06e-10,39;CL:0000211,1.06e-10,39;CL:0002319,1.33e-10,43;CL:0000221,5.16e-10,44;CL:0000133,5.16e-10,44;CL:0000117,9.08e-10,23;CL:0000337,9.08e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.01e-20!102;UBERON:0000924!8.01e-20!102;UBERON:0006601!8.01e-20!102;UBERON:0001017!3.14e-19!73;UBERON:0005743!3.14e-19!73;UBERON:0000073!7.82e-18!75;UBERON:0001016!7.82e-18!75;UBERON:0002346!6.18e-16!71;UBERON:0003075!6.18e-16!71;UBERON:0007284!6.18e-16!71;UBERON:0002020!1.08e-13!34;UBERON:0001049!1.54e-13!52;UBERON:0005068!1.54e-13!52;UBERON:0006241!1.54e-13!52;UBERON:0007135!1.54e-13!52;UBERON:0002616!3.74e-12!49;UBERON:0000955!4.14e-12!50;UBERON:0006238!4.14e-12!50;UBERON:0000033!1.08e-11!63;UBERON:0003056!1.17e-11!49;UBERON:0002791!1.23e-11!29;UBERON:0003528!1.23e-11!29;UBERON:0001893!1.23e-11!29;UBERON:0003080!1.53e-11!40;UBERON:0002780!1.84e-11!39;UBERON:0001890!1.84e-11!39;UBERON:0006240!1.84e-11!39;UBERON:0000956!2.75e-08!21;UBERON:0001869!2.75e-08!21;UBERON:0000203!2.75e-08!21;UBERON:0000468!9.74e-08!333;UBERON:0002619!3.13e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.24e-19,73;UBERON:0004121,5.77e-19,95;UBERON:0000924,5.77e-19,95;UBERON:0006601,5.77e-19,95;UBERON:0001016,1.56e-17,75;UBERON:0010371,4.57e-16,73;UBERON:0002346,9.23e-16,64;UBERON:0003075,9.23e-16,64;UBERON:0007284,9.23e-16,64;UBERON:0000073,2.54e-14,54;UBERON:0002020,8.35e-14,34;UBERON:0001049,1.19e-13,52;UBERON:0005068,1.19e-13,52;UBERON:0006241,1.19e-13,52;UBERON:0007135,1.19e-13,52;UBERON:0010314,2.14e-13,92;UBERON:0003056,9.38e-12,49;UBERON:0003528,9.88e-12,29;UBERON:0002791,9.88e-12,29;UBERON:0001893,9.88e-12,29;UBERON:0002616,1.09e-11,46;UBERON:0000955,1.22e-11,47;UBERON:0006238,1.22e-11,47;UBERON:0003080,1.23e-11,40;UBERON:0002780,1.49e-11,39;UBERON:0001890,1.49e-11,39;UBERON:0006240,1.49e-11,39;UBERON:0000956,2.38e-08,21;UBERON:0001869,2.38e-08,21;UBERON:0000203,2.38e-08,21;UBERON:0002619,2.76e-07,17|phase1_expression=2.7225304007815,10.4692622291808,5.45999087267443,1.20985684522732,0.500895729946347,11.2479112180966,7.70921713965235,0,0.281577444303333,0,0,0,0,0,0.333109761815663,0.607425802169478,0,2.05050407482854,1.37114433605739,2.12194825899015,11.3958008802433,0.198581902401771,0,3.19984845586813,2.75291137280604,2.8711598205751,3.01533397311352,4.95583835177545,2.66032787238923,2.52030129759931,1.77384408524244,0,0,0,8.08784535303569,5.15327400611326,8.16677425049476,0,0.7813353445238,0,0,0,0,0.251793635951155,0,0.550640256485045,11.7358701652206,14.171635164729,11.2039953194581,14.387812531497,12.3188051030319,18.6878333674463,2.01339127269284,0.725362142011344,0,1.80081605225163,16.3324060765091,85.6015673180554,79.7126855786815,69.2978182846363,93.1732163154083,1.69422266034566,2.66788438833342,1.3498495759221,1.97773272513395,2.8419204597844,0.898800331555214,4.99483796918021,39.4020526772215,39.8267518078487,45.8508415746013,52.2741301458961,54.9962666969518,60.1429824145424,76.1013039884797,113.063910753033,22.0231761998777,27.4527776883154,23.6554061214615,97.5958529203434,103.106574339916,110.95454792859,14.5175159480718,20.8222165711722,22.0029476798607,45.9620593338922,66.7723182947793,69.8997921844877,0.757261933331841,0.831287161174641,15.3628179011889,0,0.679971333707751,0,0,0.896053774194671,8.14577636764161,10.5666799998396,7.53379413348319,8.48014978824817,1.12674735821344,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,7.30776830201984,3.10725460376606,10.2425075954729,10.9295755862666,16.7456013071678,14.0675453326196,13.2635923686308,18.34383831317,7.53999547978053,4.44950941921873,17.6411215442292,7.07688441559899,72.7950824763341,65.8107725011973,97.9448011333149,13.0474232852686,12.8823550685081,15.7085030110091,5.62005521458901,0.11981512450592,0,0.254140454146129,15.2786452192919,123.982663363848,107.685779760725,51.2781744567216,55.4902542406817,25.5579294808259,52.890651760089,22.0991419555186,45.6573582139041,1.0108910337347,4.8401626853889,3.77349284591841,8.27647575960503,13.6847218652065,22.3043130396858,26.0579791749586,18.4483757210184,24.3624483855295,14.2286853906459,0.431135985865684,0.567318240503458,1.40760899331159,8.32943783224784,2.78047249225598,69.3021811379111,75.1104797888994,0.199034266818493,0,0,0,5.17814431338755,2.81431271977315,3.42117916775928,2.3674473558521,3.344991939705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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:58994 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9JJY3 | |||
|association_with_transcript=7bp_to_NM_021491,uc009nfy.1,uc009nfz.1_5end | |||
|cluster_id=chr8:108861829..108861880,- | |||
|description=CAGE_peak_1_at_Smpd3_5end | |||
|id=chr8:108861829..108861880,- | |||
|ontology_enrichment_celltype=CL:0000540!1.62e-13!33;CL:0000047!1.62e-13!33;CL:0000031!1.62e-13!33;CL:0000404!1.62e-13!33;CL:0002319!5.99e-11!43;CL:0000393!1.33e-10!39;CL:0000211!1.33e-10!39;CL:0000221!2.40e-10!44;CL:0000133!2.40e-10!44;CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23;CL:0000055!3.36e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.25e-13,33;CL:0000047,1.25e-13,33;CL:0000031,1.25e-13,33;CL:0000404,1.25e-13,33;CL:0000393,1.06e-10,39;CL:0000211,1.06e-10,39;CL:0002319,1.33e-10,43;CL:0000221,5.16e-10,44;CL:0000133,5.16e-10,44;CL:0000117,9.08e-10,23;CL:0000337,9.08e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.01e-20!102;UBERON:0000924!8.01e-20!102;UBERON:0006601!8.01e-20!102;UBERON:0001017!3.14e-19!73;UBERON:0005743!3.14e-19!73;UBERON:0000073!7.82e-18!75;UBERON:0001016!7.82e-18!75;UBERON:0002346!6.18e-16!71;UBERON:0003075!6.18e-16!71;UBERON:0007284!6.18e-16!71;UBERON:0002020!1.08e-13!34;UBERON:0001049!1.54e-13!52;UBERON:0005068!1.54e-13!52;UBERON:0006241!1.54e-13!52;UBERON:0007135!1.54e-13!52;UBERON:0002616!3.74e-12!49;UBERON:0000955!4.14e-12!50;UBERON:0006238!4.14e-12!50;UBERON:0000033!1.08e-11!63;UBERON:0003056!1.17e-11!49;UBERON:0002791!1.23e-11!29;UBERON:0003528!1.23e-11!29;UBERON:0001893!1.23e-11!29;UBERON:0003080!1.53e-11!40;UBERON:0002780!1.84e-11!39;UBERON:0001890!1.84e-11!39;UBERON:0006240!1.84e-11!39;UBERON:0000956!2.75e-08!21;UBERON:0001869!2.75e-08!21;UBERON:0000203!2.75e-08!21;UBERON:0000468!9.74e-08!333;UBERON:0002619!3.13e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.24e-19,73;UBERON:0004121,5.77e-19,95;UBERON:0000924,5.77e-19,95;UBERON:0006601,5.77e-19,95;UBERON:0001016,1.56e-17,75;UBERON:0010371,4.57e-16,73;UBERON:0002346,9.23e-16,64;UBERON:0003075,9.23e-16,64;UBERON:0007284,9.23e-16,64;UBERON:0000073,2.54e-14,54;UBERON:0002020,8.35e-14,34;UBERON:0001049,1.19e-13,52;UBERON:0005068,1.19e-13,52;UBERON:0006241,1.19e-13,52;UBERON:0007135,1.19e-13,52;UBERON:0010314,2.14e-13,92;UBERON:0003056,9.38e-12,49;UBERON:0003528,9.88e-12,29;UBERON:0002791,9.88e-12,29;UBERON:0001893,9.88e-12,29;UBERON:0002616,1.09e-11,46;UBERON:0000955,1.22e-11,47;UBERON:0006238,1.22e-11,47;UBERON:0003080,1.23e-11,40;UBERON:0002780,1.49e-11,39;UBERON:0001890,1.49e-11,39;UBERON:0006240,1.49e-11,39;UBERON:0000956,2.38e-08,21;UBERON:0001869,2.38e-08,21;UBERON:0000203,2.38e-08,21;UBERON:0002619,2.76e-07,17 | |||
|phase1_expression=2.7225304007815,10.4692622291808,5.45999087267443,1.20985684522732,0.500895729946347,11.2479112180966,7.70921713965235,0,0.281577444303333,0,0,0,0,0,0.333109761815663,0.607425802169478,0,2.05050407482854,1.37114433605739,2.12194825899015,11.3958008802433,0.198581902401771,0,3.19984845586813,2.75291137280604,2.8711598205751,3.01533397311352,4.95583835177545,2.66032787238923,2.52030129759931,1.77384408524244,0,0,0,8.08784535303569,5.15327400611326,8.16677425049476,0,0.7813353445238,0,0,0,0,0.251793635951155,0,0.550640256485045,11.7358701652206,14.171635164729,11.2039953194581,14.387812531497,12.3188051030319,18.6878333674463,2.01339127269284,0.725362142011344,0,1.80081605225163,16.3324060765091,85.6015673180554,79.7126855786815,69.2978182846363,93.1732163154083,1.69422266034566,2.66788438833342,1.3498495759221,1.97773272513395,2.8419204597844,0.898800331555214,4.99483796918021,39.4020526772215,39.8267518078487,45.8508415746013,52.2741301458961,54.9962666969518,60.1429824145424,76.1013039884797,113.063910753033,22.0231761998777,27.4527776883154,23.6554061214615,97.5958529203434,103.106574339916,110.95454792859,14.5175159480718,20.8222165711722,22.0029476798607,45.9620593338922,66.7723182947793,69.8997921844877,0.757261933331841,0.831287161174641,15.3628179011889,0,0.679971333707751,0,0,0.896053774194671,8.14577636764161,10.5666799998396,7.53379413348319,8.48014978824817,1.12674735821344,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,7.30776830201984,3.10725460376606,10.2425075954729,10.9295755862666,16.7456013071678,14.0675453326196,13.2635923686308,18.34383831317,7.53999547978053,4.44950941921873,17.6411215442292,7.07688441559899,72.7950824763341,65.8107725011973,97.9448011333149,13.0474232852686,12.8823550685081,15.7085030110091,5.62005521458901,0.11981512450592,0,0.254140454146129,15.2786452192919,123.982663363848,107.685779760725,51.2781744567216,55.4902542406817,25.5579294808259,52.890651760089,22.0991419555186,45.6573582139041,1.0108910337347,4.8401626853889,3.77349284591841,8.27647575960503,13.6847218652065,22.3043130396858,26.0579791749586,18.4483757210184,24.3624483855295,14.2286853906459,0.431135985865684,0.567318240503458,1.40760899331159,8.32943783224784,2.78047249225598,69.3021811379111,75.1104797888994,0.199034266818493,0,0,0,5.17814431338755,2.81431271977315,3.42117916775928,2.3674473558521,3.34499193970586,6.32495162838251,5.8133486187602,9.12129564758705,6.30532848782715,3.94943639792353,4.92502392237286,5.99909190639332,3.80119967305864,7.68425403518677,6.30770168173747,60.3532152379045,61.9485766523292,2.31293148088659,14.2803305998314,8.10495352033889,9.28946687441754,9.665059599157,13.7144796743873,9.33987784148455,11.9842144450912,7.11793592316767,11.1995289212327,11.0587491872119,8.15721535368718,6.23885078781184,7.19055526923377,7.99710784536369,6.96994456390285,0.569003702859245,2.85621281524322,1.1270773567308,1.83286195060783,0.387904974335251,1.61312385747733,0.252946148497029,0.738050739898011,0.784993639206874,0.493588655687202,0.889357881261447,1.66845105716094,0.589676985339609,0.674586337154561,0.202860121388503,0.482354319504834,1.2731292589071,2.87696137450811,0.324270453550071,1.64736847912849,1.43768206527355,1.86070473834252,1.24815069245824,1.01031551178845,1.07638448113147,1.4473305640901,2.40179147216586,1.32643988239339,0.814824882210129,1.35796068620151,1.64283173801951,2.01007508930179,2.14239276797412,5.07347484430277,0.788175720530955,1.10732344824387,1.75400245523236,6.06294264448231,2.07221978239075,4.48412081602686,0,0,3.44234991113325,4.41498794087572,9.31193421929193,10.7834751664827,8.19674726883377,12.3710754330143,93.390432947212,106.589777192982,130.546579026076,23.1799734013975,28.9638276307112,46.1414745185797,82.9861938433533,125.962274759775,131.235542278246,10.2822821254978,3.12268187458191,10.8620018237026,17.5917916101862,2.63952196756057,7.96470830039777,2.91336763385978,5.13950046840077,7.16699303072413,14.1744908582771,14.4494519533646,23.2585463851399,12.3601468022352,13.1904030002347,23.3867200872504,10.5418608574999,17.5330423521918,25.8734100372879,3.96134406868882,4.65691261617916,3.00071849044229,12.945837055886,13.5560301377574,23.3659609255012,25.2705907765117,0.23467170806371,1.27099242518292,3.52845436887939,52.9284871942151,98.4933002845024,50.2406664651538,34.0211180408939,27.0832484579351,8.16146342563582,8.90041449650446,0.512612642393558,3.09580301944834,2.59272338317596,0.376736914009382,0.27338845544205,0.228778173206523,0.169978429993855,0.139951452323658,0.138199973804424,37.2321541025894,4.9032079005076,6.91286188231286,9.72048067396211,17.9815934572443,33.6278348169114,55.2943820177765,38.6818172794572,66.7477652059275,2.85152941241944,2.4853572523477,2.25477175473676,0.299033092087958,0.330916980914195,0.194451188344048,2.97067593998782,3.21016638432478,3.87278887530988,2.21347454234715,3.56521771047417,5.79801889982414,3.45636007509439,2.52808896502543,1.41907650703115,1.95150818613172,0.9094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| |||
|short_description=p1@Smpd3 | |||
}} |
Revision as of 20:49, 5 August 2015
Short description: | p1@Smpd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smpd3_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_NM_021491, uc009nfy.1, uc009nfz.1_5end |
EntrezGene: | 58994 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.25e-13 | 33 |
neuronal stem cell | 1.25e-13 | 33 |
neuroblast | 1.25e-13 | 33 |
electrically signaling cell | 1.25e-13 | 33 |
electrically responsive cell | 1.06e-10 | 39 |
electrically active cell | 1.06e-10 | 39 |
neural cell | 1.33e-10 | 43 |
ectodermal cell | 5.16e-10 | 44 |
neurectodermal cell | 5.16e-10 | 44 |
CNS neuron (sensu Vertebrata) | 9.08e-10 | 23 |
neuroblast (sensu Vertebrata) | 9.08e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.24e-19 | 73 |
ectoderm-derived structure | 5.77e-19 | 95 |
ectoderm | 5.77e-19 | 95 |
presumptive ectoderm | 5.77e-19 | 95 |
nervous system | 1.56e-17 | 75 |
ecto-epithelium | 4.57e-16 | 73 |
neurectoderm | 9.23e-16 | 64 |
neural plate | 9.23e-16 | 64 |
presumptive neural plate | 9.23e-16 | 64 |
regional part of nervous system | 2.54e-14 | 54 |
gray matter | 8.35e-14 | 34 |
neural tube | 1.19e-13 | 52 |
neural rod | 1.19e-13 | 52 |
future spinal cord | 1.19e-13 | 52 |
neural keel | 1.19e-13 | 52 |
structure with developmental contribution from neural crest | 2.14e-13 | 92 |
pre-chordal neural plate | 9.38e-12 | 49 |
brain grey matter | 9.88e-12 | 29 |
regional part of telencephalon | 9.88e-12 | 29 |
telencephalon | 9.88e-12 | 29 |
regional part of brain | 1.09e-11 | 46 |
brain | 1.22e-11 | 47 |
future brain | 1.22e-11 | 47 |
anterior neural tube | 1.23e-11 | 40 |
regional part of forebrain | 1.49e-11 | 39 |
forebrain | 1.49e-11 | 39 |
future forebrain | 1.49e-11 | 39 |
cerebral cortex | 2.38e-08 | 21 |
cerebral hemisphere | 2.38e-08 | 21 |
pallium | 2.38e-08 | 21 |
regional part of cerebral cortex | 2.76e-07 | 17 |