FFCP PHASE1:Mm9::chr7:24919167..24919203,+: Difference between revisions
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{{FFCP|EntrezGene=56525|HGNC=|UniProt=Q499D5,E9Q8V8|association_with_transcript=0bp_to_ENSMUST00000056549,ENSMUST00000098695,NM_019941,uc009fov.1,uc009fow.1,uc012ffg.1_5end|description=CAGE_peak_1_at_Zfp235_5end|id=chr7:24919167..24919203,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.28e-18!63;UBERON:0001049!2.33e-17!52;UBERON:0005068!2.33e-17!52;UBERON:0006241!2.33e-17!52;UBERON:0007135!2.33e-17!52;UBERON:0000955!2.44e-16!50;UBERON:0006238!2.44e-16!50;UBERON:0002346!4.83e-16!71;UBERON:0003075!4.83e-16!71;UBERON:0007284!4.83e-16!71;UBERON:0002616!1.12e-15!49;UBERON:0003056!6.14e-15!49;UBERON:0001017!2.64e-14!73;UBERON:0005743!2.64e-14!73;UBERON:0004121!1.98e-13!102;UBERON:0000924!1.98e-13!102;UBERON:0006601!1.98e-13!102;UBERON:0003080!2.59e-13!40;UBERON:0000073!3.66e-13!75;UBERON:0001016!3.66e-13!75;UBERON:0002780!1.16e-12!39;UBERON:0001890!1.16e-12!39;UBERON:0006240!1.16e-12!39;UBERON:0002020!8.64e-12!34;UBERON:0004111!3.17e-11!122;UBERON:0000025!6.89e-11!114;UBERON:0002791!1.22e-10!29;UBERON:0003528!1.22e-10!29;UBERON:0001893!1.22e-10!29;UBERON:0000468!1.81e-10!333;UBERON:0000956!7.75e-09!21;UBERON:0001869!7.75e-09!21;UBERON:0000203!7.75e-09!21;UBERON:0000153!1.46e-07!94;UBERON:0000475!4.17e-07!200;UBERON:0000922!4.38e-07!328;UBERON:0002619!4.63e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.44e-18,64;UBERON:0003075,3.44e-18,64;UBERON:0007284,3.44e-18,64;UBERON:0010371,9.22e-18,73;UBERON:0001049,2.33e-17,52;UBERON:0005068,2.33e-17,52;UBERON:0006241,2.33e-17,52;UBERON:0007135,2.33e-17,52;UBERON:0000073,5.47e-17,54;UBERON:0000955,4.47e-16,47;UBERON:0006238,4.47e-16,47;UBERON:0002616,2.05e-15,46;UBERON:0003056,6.14e-15,49;UBERON:0004121,1.05e-14,95;UBERON:0000924,1.05e-14,95;UBERON:0006601,1.05e-14,95;UBERON:0001017,2.64e-14,73;UBERON:0003080,2.59e-13,40;UBERON:0001016,3.66e-13,75;UBERON:0002780,1.16e-12,39;UBERON:0001890,1.16e-12,39;UBERON:0006240,1.16e-12,39;UBERON:0010314,6.17e-12,92;UBERON:0002020,8.63e-12,34;UBERON:0004111,3.17e-11,122;UBERON:0000025,6.89e-11,114;UBERON:0003528,1.22e-10,29;UBERON:0002791,1.22e-10,29;UBERON:0001893,1.22e-10,29;UBERON:0000956,7.75e-09,21;UBERON:0001869,7.75e-09,21;UBERON:0000203,7.75e-09,21;UBERON:0002619,4.63e-07,17|phase1_expression=7.36684696682052,2.09385244583617,2.27499619694768,2.41971369045464,0.500895729946347,2.01455126294268,2.10251376535973,2.7115897922731,0.281577444303333,0,0.856089841127525,1.7549874978974,2.05440875917447,2.62261207256992,1.99865857089398,1.41732687172878,1.39912375625629,4.10100814965709,4.2505474417779,3.81950686618227,5.18764069921526,3.67376519443276,2.87319768052829,4.15980299262857,7.11168771308227,1.14846392823004,2.58457197695445,0.861884930743556,3.99049180858385,2.77233142735924,3.76941868114018,1.90509202037889,1.84519436275371,0,6.06588401477677,2.49351968037739,3.87921776898501,2.09265815368454,5.4693474116666,6.28228492768558,2.94115744015507,4.09827290975067,3.39857247121808,5.66535680890098,6.58950052926845,4.9557623083654,7.82391344348039,3.92445281484804,3.73466510648602,4.6663175777828,6.7193482380174,4.31257693094915,1.8456086666351,1.45072428402269,0.336093799142464,3.08711323243136,4.87106847895886,3.09403255366465,8.09265843438391,8.99284664762456,5.07065122804943,3.04960078862219,2.66788438833342,3.1496490104849,3.9554654502679,5.6838409195688,4.19440154725767,4.99483796918021,7.46565208621039,13.095576018174,9.88527318351495,6.85562362569129,7.06779331045163,6.73699395682247,9.4887016308054,10.1114066527102,6.60695285996332,8.2996769755372,6.60508093001847,9.62769900430415,8.78281378583133,8.33461392890816,8.09630697104005,6.19038871034848,6.1119299110724,8.83885756421003,7.54569908235246,9.69277118291563,3.63485727999283,3.09843396437821,5.50742528533188,6.0229671388697,3.39985666853875,3.2382191498269,3.89865850468601,8.06448396775204,4.21333260395256,4.94247935476367,4.41636207824877,7.0667914902068,4.78867627240714,3.84979432242953,10.1922095882658,0,1.94841936910093,1.01343946190039,0,4.33898742932428,7.25026074212081,5.64080128446334,3.12273588179045,4.87144765299426,7.61031140944993,5.27529241934179,3.88042733547826,5.90632979249475,3.95511948374998,14.1707369781513,3.5384422077995,7.27950824763341,3.3126227769059,2.42437626567611,5.59175283654366,19.9090941967852,24.0863712835473,5.36459815938042,1.7972268675888,1.79970819298022,3.17675567682662,15.8778077769112,9.60751265919116,8.92145900001337,11.8200537730748,10.4843337505436,12.8828587626927,11.356888414743,8.7581852911272,6.84238338355512,5.30717792710717,7.78634866779954,6.11566081924707,7.81667155073808,6.66229880279792,5.72678307775717,8.23241639731067,9.73664274164858,7.21503279109912,11.6416516832557,4.31135985865684,9.07709184805532,9.50136070485324,9.42541649438572,8.06337022754234,8.70630416305416,8.84863186554157,7.56330213910274,4.21327912387941,2.05878325691772,2.84163499395593,2.69263504296152,5.8631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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56525 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q499D5,uniprot:E9Q8V8 | |||
|association_with_transcript=0bp_to_ENSMUST00000056549,ENSMUST00000098695,NM_019941,uc009fov.1,uc009fow.1,uc012ffg.1_5end | |||
|cluster_id=chr7:24919167..24919203,+ | |||
|description=CAGE_peak_1_at_Zfp235_5end | |||
|id=chr7:24919167..24919203,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.28e-18!63;UBERON:0001049!2.33e-17!52;UBERON:0005068!2.33e-17!52;UBERON:0006241!2.33e-17!52;UBERON:0007135!2.33e-17!52;UBERON:0000955!2.44e-16!50;UBERON:0006238!2.44e-16!50;UBERON:0002346!4.83e-16!71;UBERON:0003075!4.83e-16!71;UBERON:0007284!4.83e-16!71;UBERON:0002616!1.12e-15!49;UBERON:0003056!6.14e-15!49;UBERON:0001017!2.64e-14!73;UBERON:0005743!2.64e-14!73;UBERON:0004121!1.98e-13!102;UBERON:0000924!1.98e-13!102;UBERON:0006601!1.98e-13!102;UBERON:0003080!2.59e-13!40;UBERON:0000073!3.66e-13!75;UBERON:0001016!3.66e-13!75;UBERON:0002780!1.16e-12!39;UBERON:0001890!1.16e-12!39;UBERON:0006240!1.16e-12!39;UBERON:0002020!8.64e-12!34;UBERON:0004111!3.17e-11!122;UBERON:0000025!6.89e-11!114;UBERON:0002791!1.22e-10!29;UBERON:0003528!1.22e-10!29;UBERON:0001893!1.22e-10!29;UBERON:0000468!1.81e-10!333;UBERON:0000956!7.75e-09!21;UBERON:0001869!7.75e-09!21;UBERON:0000203!7.75e-09!21;UBERON:0000153!1.46e-07!94;UBERON:0000475!4.17e-07!200;UBERON:0000922!4.38e-07!328;UBERON:0002619!4.63e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.44e-18,64;UBERON:0003075,3.44e-18,64;UBERON:0007284,3.44e-18,64;UBERON:0010371,9.22e-18,73;UBERON:0001049,2.33e-17,52;UBERON:0005068,2.33e-17,52;UBERON:0006241,2.33e-17,52;UBERON:0007135,2.33e-17,52;UBERON:0000073,5.47e-17,54;UBERON:0000955,4.47e-16,47;UBERON:0006238,4.47e-16,47;UBERON:0002616,2.05e-15,46;UBERON:0003056,6.14e-15,49;UBERON:0004121,1.05e-14,95;UBERON:0000924,1.05e-14,95;UBERON:0006601,1.05e-14,95;UBERON:0001017,2.64e-14,73;UBERON:0003080,2.59e-13,40;UBERON:0001016,3.66e-13,75;UBERON:0002780,1.16e-12,39;UBERON:0001890,1.16e-12,39;UBERON:0006240,1.16e-12,39;UBERON:0010314,6.17e-12,92;UBERON:0002020,8.63e-12,34;UBERON:0004111,3.17e-11,122;UBERON:0000025,6.89e-11,114;UBERON:0003528,1.22e-10,29;UBERON:0002791,1.22e-10,29;UBERON:0001893,1.22e-10,29;UBERON:0000956,7.75e-09,21;UBERON:0001869,7.75e-09,21;UBERON:0000203,7.75e-09,21;UBERON:0002619,4.63e-07,17 | |||
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| |||
|short_description=p1@Zfp235 | |||
}} |
Revision as of 18:52, 4 August 2015
Short description: | p1@Zfp235 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfp235_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000056549, ENSMUST00000098695, NM_019941, uc009fov.1, uc009fow.1, uc012ffg.1_5end |
EntrezGene: | 56525 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.44e-18 | 64 |
neural plate | 3.44e-18 | 64 |
presumptive neural plate | 3.44e-18 | 64 |
ecto-epithelium | 9.22e-18 | 73 |
neural tube | 2.33e-17 | 52 |
neural rod | 2.33e-17 | 52 |
future spinal cord | 2.33e-17 | 52 |
neural keel | 2.33e-17 | 52 |
regional part of nervous system | 5.47e-17 | 54 |
brain | 4.47e-16 | 47 |
future brain | 4.47e-16 | 47 |
regional part of brain | 2.05e-15 | 46 |
pre-chordal neural plate | 6.14e-15 | 49 |
ectoderm-derived structure | 1.05e-14 | 95 |
ectoderm | 1.05e-14 | 95 |
presumptive ectoderm | 1.05e-14 | 95 |
central nervous system | 2.64e-14 | 73 |
anterior neural tube | 2.59e-13 | 40 |
nervous system | 3.66e-13 | 75 |
regional part of forebrain | 1.16e-12 | 39 |
forebrain | 1.16e-12 | 39 |
future forebrain | 1.16e-12 | 39 |
structure with developmental contribution from neural crest | 6.17e-12 | 92 |
gray matter | 8.63e-12 | 34 |
anatomical conduit | 3.17e-11 | 122 |
tube | 6.89e-11 | 114 |
brain grey matter | 1.22e-10 | 29 |
regional part of telencephalon | 1.22e-10 | 29 |
telencephalon | 1.22e-10 | 29 |
cerebral cortex | 7.75e-09 | 21 |
cerebral hemisphere | 7.75e-09 | 21 |
pallium | 7.75e-09 | 21 |
regional part of cerebral cortex | 4.63e-07 | 17 |