FFCP PHASE1:Mm9::chr7:17062114..17062141,-: Difference between revisions
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{{FFCP|EntrezGene=18142|HGNC=|MCL_coexpression_id=1|UniProt=P97459,A2RSH6|association_with_transcript=0bp_to_ENSMUST00000002053,NM_008718,uc009fhv.2_5end|description=CAGE_peak_1_at_Npas1_5end|id=chr7:17062114..17062141,-|ontology_enrichment_celltype=CL:0000117!1.36e-23!23;CL:0000337!1.36e-23!23;CL:0002319!3.70e-16!43;CL:0000221!1.47e-15!44;CL:0000133!1.47e-15!44;CL:0000540!4.75e-15!33;CL:0000047!4.75e-15!33;CL:0000031!4.75e-15!33;CL:0000404!4.75e-15!33;CL:0000055!1.70e-12!50;CL:0000393!1.82e-11!39;CL:0000211!1.82e-11!39;CL:0002609!2.91e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,1.17e-31,23;CL:0000337,1.17e-31,23;CL:0000540,1.85e-20,33;CL:0000047,1.85e-20,33;CL:0000031,1.85e-20,33;CL:0000404,1.85e-20,33;CL:0002319,1.00e-19,43;CL:0000221,3.84e-19,44;CL:0000133,3.84e-19,44;CL:0000393,1.65e-16,39;CL:0000211,1.65e-16,39;CL:0002609,9.22e-12,6;CL:0002321,6.94e-10,70;CL:0002610,5.81e-08,3;CL:0002614,1.72e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.46e-34!73;UBERON:0005743!4.46e-34!73;UBERON:0000073!7.72e-34!75;UBERON:0001016!7.72e-34!75;UBERON:0001049!5.66e-32!52;UBERON:0005068!5.66e-32!52;UBERON:0006241!5.66e-32!52;UBERON:0007135!5.66e-32!52;UBERON:0002020!1.77e-31!34;UBERON:0000955!1.58e-30!50;UBERON:0006238!1.58e-30!50;UBERON:0002616!6.59e-30!49;UBERON:0002791!9.99e-27!29;UBERON:0003528!9.99e-27!29;UBERON:0001893!9.99e-27!29;UBERON:0000033!7.93e-26!63;UBERON:0002346!1.12e-24!71;UBERON:0003075!1.12e-24!71;UBERON:0007284!1.12e-24!71;UBERON:0004121!9.90e-24!102;UBERON:0000924!9.90e-24!102;UBERON:0006601!9.90e-24!102;UBERON:0003080!4.69e-23!40;UBERON:0002780!5.11e-22!39;UBERON:0001890!5.11e-22!39;UBERON:0006240!5.11e-22!39;UBERON:0003056!2.69e-21!49;UBERON:0000956!3.75e-19!21;UBERON:0001869!3.75e-19!21;UBERON:0000203!3.75e-19!21;UBERON:0002619!4.06e-15!17;UBERON:0007811!7.02e-15!86;UBERON:0000153!2.11e-12!94;UBERON:0002021!4.47e-11!10;UBERON:0000411!4.47e-11!10;UBERON:0001950!4.47e-11!10;UBERON:0003076!3.35e-09!12;UBERON:0003057!3.35e-09!12;UBERON:0002420!1.31e-08!8;UBERON:0007245!1.31e-08!8;UBERON:0010009!1.31e-08!8;UBERON:0010011!1.31e-08!8;UBERON:0000454!1.31e-08!8;UBERON:0002298!1.04e-07!6;UBERON:0000025!1.89e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.20e-45,54;UBERON:0001017,4.55e-44,73;UBERON:0001016,1.20e-42,75;UBERON:0001049,4.47e-41,52;UBERON:0005068,4.47e-41,52;UBERON:0006241,4.47e-41,52;UBERON:0007135,4.47e-41,52;UBERON:0002020,4.58e-41,34;UBERON:0003528,1.65e-38,29;UBERON:0002791,1.65e-38,29;UBERON:0001893,1.65e-38,29;UBERON:0002616,3.09e-36,46;UBERON:0000955,2.68e-35,47;UBERON:0006238,2.68e-35,47;UBERON:0003080,4.20e-34,40;UBERON:0002780,2.50e-32,39;UBERON:0001890,2.50e-32,39;UBERON:0006240,2.50e-32,39;UBERON:0002346,8.63e-32,64;UBERON:0003075,8.63e-32,64;UBERON:0007284,8.63e-32,64;UBERON:0004121,1.00e-31,95;UBERON:0000924,1.00e-31,95;UBERON:0006601,1.00e-31,95;UBERON:0000956,5.68e-31,21;UBERON:0001869,5.68e-31,21;UBERON:0000203,5.68e-31,21;UBERON:0010371,7.90e-27,73;UBERON:0003056,1.63e-26,49;UBERON:0002619,8.50e-24,17;UBERON:0010314,1.52e-19,92;UBERON:0002021,1.43e-18,10;UBERON:0000411,1.43e-18,10;UBERON:0001950,1.43e-18,10;UBERON:0000025,3.79e-14,114;UBERON:0004111,1.14e-12,122;UBERON:0011216,1.02e-10,194;UBERON:0002950,2.63e-09,4;UBERON:0001891,2.63e-09,4;UBERON:0009616,2.63e-09,4;UBERON:0010286,2.63e-09,4;UBERON:0002420,1.18e-08,8;UBERON:0007245,1.18e-08,8;UBERON:0010009,1.18e-08,8;UBERON:0010011,1.18e-08,8;UBERON:0000454,1.18e-08,8;UBERON:0004684,5.81e-08,3;UBERON:0002275,5.81e-08,3;UBERON:0002038,1.72e-07,3;UBERON:0009663,1.72e-07,3;UBERON:0009661,1.72e-07,3;UBERON:0000125,1.72e-07,3;UBERON:0002308,1.72e-07,3;UBERON:0003076,2.52e-07,12;UBERON:0003057,2.52e-07,12;UBERON:0001954,3.15e-07,7;UBERON:0003022,3.15e-07,7;UBERON:0002421,3.15e-07,7;UBERON:0000349,3.15e-07,7;UBERON:0002600,3.15e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70642765846759,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,3.23706337375356,3.1739458756322,1.26766280701236,0,0,0,0,0,1.49800055259202,1.53687322128622,3.21437798156281,4.18518408828241,4.41682418837902,3.42781181284564,3.53389665522582,1.83736198822431,1.34183659425531,4.5960939330501,13.2139057199266,8.55505165170758,10.5988507946808,0.791317726381163,1.37231465403614,2.6045668527838,11.1673199600552,3.37657566019008,4.73674568108111,0.883885756421003,3.13217697758026,0.931997229126503,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,3.44518470631092,0.915001205637253,3.01570445070875,2.08589184230732,2.30143911597297,6.02585329222724,3.24482526135515,0.101839363850316,0,0,0,0.520481771850815,0,0,0,0.136072998302656,0.2562274405697,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83666881697493,7.51203670368776,0,0,0,0,0,0,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21101179975584,3.16471553798949,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,2.22510362412612,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.76195141904306,3.43737308063638,3.26521046453006,4.11049511862385,3.7769694869485,2.02506750069542,3.15224842256954,3.17199686288943,4.65984280576638,0,0.798049746802062,0,0,0,0.551530525350042,0.222246727801615,0.206035057238894,0.320919209591815,0.505394423527595,0,0,0.187283014939765,0.640251524048693,0.516919220600519,1.42888107384922,0.463537303779422,0,0,0.147198920134397,0,0.354951612318675,0.476872379894642,0.581385666529314,0.564656282491984,0.25384382367503,0.365855945745545,0.263069711437843,0.543216455383447,0,0.593175090620871,0.591026894253381,0,0.464810523557898,0.192906610981141,0.749431733813838,0.935726433781634,0.429742108096597,0.191288332068843,0,0.463735671240843|short_description=p1@Npas1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18142 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P97459,uniprot:A2RSH6 | |||
|association_with_transcript=0bp_to_ENSMUST00000002053,NM_008718,uc009fhv.2_5end | |||
|cluster_id=chr7:17062114..17062141,- | |||
|description=CAGE_peak_1_at_Npas1_5end | |||
|id=chr7:17062114..17062141,- | |||
|ontology_enrichment_celltype=CL:0000117!1.36e-23!23;CL:0000337!1.36e-23!23;CL:0002319!3.70e-16!43;CL:0000221!1.47e-15!44;CL:0000133!1.47e-15!44;CL:0000540!4.75e-15!33;CL:0000047!4.75e-15!33;CL:0000031!4.75e-15!33;CL:0000404!4.75e-15!33;CL:0000055!1.70e-12!50;CL:0000393!1.82e-11!39;CL:0000211!1.82e-11!39;CL:0002609!2.91e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.17e-31,23;CL:0000337,1.17e-31,23;CL:0000540,1.85e-20,33;CL:0000047,1.85e-20,33;CL:0000031,1.85e-20,33;CL:0000404,1.85e-20,33;CL:0002319,1.00e-19,43;CL:0000221,3.84e-19,44;CL:0000133,3.84e-19,44;CL:0000393,1.65e-16,39;CL:0000211,1.65e-16,39;CL:0002609,9.22e-12,6;CL:0002321,6.94e-10,70;CL:0002610,5.81e-08,3;CL:0002614,1.72e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.46e-34!73;UBERON:0005743!4.46e-34!73;UBERON:0000073!7.72e-34!75;UBERON:0001016!7.72e-34!75;UBERON:0001049!5.66e-32!52;UBERON:0005068!5.66e-32!52;UBERON:0006241!5.66e-32!52;UBERON:0007135!5.66e-32!52;UBERON:0002020!1.77e-31!34;UBERON:0000955!1.58e-30!50;UBERON:0006238!1.58e-30!50;UBERON:0002616!6.59e-30!49;UBERON:0002791!9.99e-27!29;UBERON:0003528!9.99e-27!29;UBERON:0001893!9.99e-27!29;UBERON:0000033!7.93e-26!63;UBERON:0002346!1.12e-24!71;UBERON:0003075!1.12e-24!71;UBERON:0007284!1.12e-24!71;UBERON:0004121!9.90e-24!102;UBERON:0000924!9.90e-24!102;UBERON:0006601!9.90e-24!102;UBERON:0003080!4.69e-23!40;UBERON:0002780!5.11e-22!39;UBERON:0001890!5.11e-22!39;UBERON:0006240!5.11e-22!39;UBERON:0003056!2.69e-21!49;UBERON:0000956!3.75e-19!21;UBERON:0001869!3.75e-19!21;UBERON:0000203!3.75e-19!21;UBERON:0002619!4.06e-15!17;UBERON:0007811!7.02e-15!86;UBERON:0000153!2.11e-12!94;UBERON:0002021!4.47e-11!10;UBERON:0000411!4.47e-11!10;UBERON:0001950!4.47e-11!10;UBERON:0003076!3.35e-09!12;UBERON:0003057!3.35e-09!12;UBERON:0002420!1.31e-08!8;UBERON:0007245!1.31e-08!8;UBERON:0010009!1.31e-08!8;UBERON:0010011!1.31e-08!8;UBERON:0000454!1.31e-08!8;UBERON:0002298!1.04e-07!6;UBERON:0000025!1.89e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.20e-45,54;UBERON:0001017,4.55e-44,73;UBERON:0001016,1.20e-42,75;UBERON:0001049,4.47e-41,52;UBERON:0005068,4.47e-41,52;UBERON:0006241,4.47e-41,52;UBERON:0007135,4.47e-41,52;UBERON:0002020,4.58e-41,34;UBERON:0003528,1.65e-38,29;UBERON:0002791,1.65e-38,29;UBERON:0001893,1.65e-38,29;UBERON:0002616,3.09e-36,46;UBERON:0000955,2.68e-35,47;UBERON:0006238,2.68e-35,47;UBERON:0003080,4.20e-34,40;UBERON:0002780,2.50e-32,39;UBERON:0001890,2.50e-32,39;UBERON:0006240,2.50e-32,39;UBERON:0002346,8.63e-32,64;UBERON:0003075,8.63e-32,64;UBERON:0007284,8.63e-32,64;UBERON:0004121,1.00e-31,95;UBERON:0000924,1.00e-31,95;UBERON:0006601,1.00e-31,95;UBERON:0000956,5.68e-31,21;UBERON:0001869,5.68e-31,21;UBERON:0000203,5.68e-31,21;UBERON:0010371,7.90e-27,73;UBERON:0003056,1.63e-26,49;UBERON:0002619,8.50e-24,17;UBERON:0010314,1.52e-19,92;UBERON:0002021,1.43e-18,10;UBERON:0000411,1.43e-18,10;UBERON:0001950,1.43e-18,10;UBERON:0000025,3.79e-14,114;UBERON:0004111,1.14e-12,122;UBERON:0011216,1.02e-10,194;UBERON:0002950,2.63e-09,4;UBERON:0001891,2.63e-09,4;UBERON:0009616,2.63e-09,4;UBERON:0010286,2.63e-09,4;UBERON:0002420,1.18e-08,8;UBERON:0007245,1.18e-08,8;UBERON:0010009,1.18e-08,8;UBERON:0010011,1.18e-08,8;UBERON:0000454,1.18e-08,8;UBERON:0004684,5.81e-08,3;UBERON:0002275,5.81e-08,3;UBERON:0002038,1.72e-07,3;UBERON:0009663,1.72e-07,3;UBERON:0009661,1.72e-07,3;UBERON:0000125,1.72e-07,3;UBERON:0002308,1.72e-07,3;UBERON:0003076,2.52e-07,12;UBERON:0003057,2.52e-07,12;UBERON:0001954,3.15e-07,7;UBERON:0003022,3.15e-07,7;UBERON:0002421,3.15e-07,7;UBERON:0000349,3.15e-07,7;UBERON:0002600,3.15e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70642765846759,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,3.23706337375356,3.1739458756322,1.26766280701236,0,0,0,0,0,1.49800055259202,1.53687322128622,3.21437798156281,4.18518408828241,4.41682418837902,3.42781181284564,3.53389665522582,1.83736198822431,1.34183659425531,4.5960939330501,13.2139057199266,8.55505165170758,10.5988507946808,0.791317726381163,1.37231465403614,2.6045668527838,11.1673199600552,3.37657566019008,4.73674568108111,0.883885756421003,3.13217697758026,0.931997229126503,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,3.44518470631092,0.915001205637253,3.01570445070875,2.08589184230732,2.30143911597297,6.02585329222724,3.24482526135515,0.101839363850316,0,0,0,0.520481771850815,0,0,0,0.136072998302656,0.2562274405697,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83666881697493,7.51203670368776,0,0,0,0,0,0,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21101179975584,3.16471553798949,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,2.22510362412612,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.76195141904306,3.43737308063638,3.26521046453006,4.11049511862385,3.7769694869485,2.02506750069542,3.15224842256954,3.17199686288943,4.65984280576638,0,0.798049746802062,0,0,0,0.551530525350042,0.222246727801615,0.206035057238894,0.320919209591815,0.505394423527595,0,0,0.187283014939765,0.640251524048693,0.516919220600519,1.42888107384922,0.463537303779422,0,0,0.147198920134397,0,0.354951612318675,0.476872379894642,0.581385666529314,0.564656282491984,0.25384382367503,0.365855945745545,0.263069711437843,0.543216455383447,0,0.593175090620871,0.591026894253381,0,0.464810523557898,0.192906610981141,0.749431733813838,0.935726433781634,0.429742108096597,0.191288332068843,0,0.463735671240843 | |||
|short_description=p1@Npas1 | |||
}} |
Revision as of 16:21, 4 August 2015
Short description: | p1@Npas1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Npas1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000002053, NM_008718, uc009fhv.2_5end |
EntrezGene: | 18142 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.17e-31 | 23 |
neuroblast (sensu Vertebrata) | 1.17e-31 | 23 |
neuron | 1.85e-20 | 33 |
neuronal stem cell | 1.85e-20 | 33 |
neuroblast | 1.85e-20 | 33 |
electrically signaling cell | 1.85e-20 | 33 |
neural cell | 1.00e-19 | 43 |
ectodermal cell | 3.84e-19 | 44 |
neurectodermal cell | 3.84e-19 | 44 |
electrically responsive cell | 1.65e-16 | 39 |
electrically active cell | 1.65e-16 | 39 |
neuron of cerebral cortex | 9.22e-12 | 6 |
embryonic cell | 6.94e-10 | 70 |
raphe nuclei neuron | 5.81e-08 | 3 |
neuron of the substantia nigra | 1.72e-07 | 3 |