FFCP PHASE1:Mm9::chr7:148748092..148748175,+: Difference between revisions
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{{FFCP|EntrezGene=11772|HGNC=|UniProt=P17427,Q69ZW4,Q6PEE6|association_with_transcript=13bp_to_ENSMUST00000003038,NM_007459,uc009klr.2,uc009kls.2_5end|description=CAGE_peak_1_at_Ap2a2_5end|id=chr7:148748092..148748175,+|ontology_enrichment_celltype=CL:0002321!8.26e-15!70;CL:0000220!8.26e-15!70;CL:0000055!8.00e-14!50;CL:0002319!2.75e-12!43;CL:0000117!1.85e-11!23;CL:0000337!1.85e-11!23;CL:0000221!2.06e-11!44;CL:0000133!2.06e-11!44;CL:0000393!1.31e-10!39;CL:0000211!1.31e-10!39;CL:0000540!2.17e-09!33;CL:0000047!2.17e-09!33;CL:0000031!2.17e-09!33;CL:0000404!2.17e-09!33;CL:0002371!3.15e-08!118;CL:0000548!6.95e-08!115;CL:0000004!6.95e-08!115;CL:0000255!6.95e-08!115;CL:0000144!6.60e-07!121;CL:0000012!6.60e-07!121|ontology_enrichment_celltype_v019_2=CL:0002321,8.26e-15,70;CL:0002319,2.75e-12,43;CL:0000117,1.85e-11,23;CL:0000337,1.85e-11,23;CL:0000221,2.06e-11,44;CL:0000133,2.06e-11,44;CL:0000393,1.31e-10,39;CL:0000211,1.31e-10,39;CL:0000540,2.17e-09,33;CL:0000047,2.17e-09,33;CL:0000031,2.17e-09,33;CL:0000404,2.17e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.19e-18!75;UBERON:0001016!2.19e-18!75;UBERON:0001017!7.71e-18!73;UBERON:0005743!7.71e-18!73;UBERON:0002020!1.70e-16!34;UBERON:0001049!5.81e-14!52;UBERON:0005068!5.81e-14!52;UBERON:0006241!5.81e-14!52;UBERON:0007135!5.81e-14!52;UBERON:0002791!9.52e-14!29;UBERON:0003528!9.52e-14!29;UBERON:0001893!9.52e-14!29;UBERON:0000955!1.38e-13!50;UBERON:0006238!1.38e-13!50;UBERON:0002616!2.68e-13!49;UBERON:0000956!1.60e-10!21;UBERON:0001869!1.60e-10!21;UBERON:0000203!1.60e-10!21;UBERON:0003080!1.67e-10!40;UBERON:0002780!2.64e-10!39;UBERON:0001890!2.64e-10!39;UBERON:0006240!2.64e-10!39;UBERON:0002619!1.68e-09!17;UBERON:0004121!2.07e-08!102;UBERON:0000924!2.07e-08!102;UBERON:0006601!2.07e-08!102;UBERON:0002021!2.08e-07!10;UBERON:0000411!2.08e-07!10;UBERON:0001950!2.08e-07!10;UBERON:0002346!3.68e-07!71;UBERON:0003075!3.68e-07!71;UBERON:0007284!3.68e-07!71;UBERON:0000033!3.82e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.19e-18,75;UBERON:0001017,7.71e-18,73;UBERON:0002020,1.70e-16,34;UBERON:0000073,6.19e-16,54;UBERON:0001049,5.81e-14,52;UBERON:0005068,5.81e-14,52;UBERON:0006241,5.81e-14,52;UBERON:0007135,5.81e-14,52;UBERON:0003528,9.52e-14,29;UBERON:0002791,9.52e-14,29;UBERON:0001893,9.52e-14,29;UBERON:0000955,5.72e-12,47;UBERON:0006238,5.72e-12,47;UBERON:0002616,1.10e-11,46;UBERON:0004121,1.15e-10,95;UBERON:0000924,1.15e-10,95;UBERON:0006601,1.15e-10,95;UBERON:0000956,1.60e-10,21;UBERON:0001869,1.60e-10,21;UBERON:0000203,1.60e-10,21;UBERON:0003080,1.67e-10,40;UBERON:0002780,2.64e-10,39;UBERON:0001890,2.64e-10,39;UBERON:0006240,2.64e-10,39;UBERON:0002346,9.91e-10,64;UBERON:0003075,9.91e-10,64;UBERON:0007284,9.91e-10,64;UBERON:0002619,1.68e-09,17;UBERON:0011216,8.02e-08,194;UBERON:0002021,2.08e-07,10;UBERON:0000411,2.08e-07,10;UBERON:0001950,2.08e-07,10;UBERON:0010371,8.43e-07,73|phase1_expression=33.6312578920067,134.704507348793,152.424745195495,265.563577527397,214.383372417037,51.5389364769502,55.1325831805441,27.6323912164973,56.4562775828184,63.8996156859042,22.9432077422177,23.2934704266382,32.6993394168603,29.6355164200401,111.924879970063,92.1262466623708,134.315880600604,25.8678975593755,24.4063691818215,30.1316652776601,61.5713420693745,25.0213197026231,22.2019820768095,69.5967039151319,65.6110543852106,101.639057648359,107.25973704361,71.7519204844011,100.712412311878,109.88513657533,39.6897614072995,72.393496774398,65.1968674839644,110.937176710807,25.9966457776147,27.4287164841512,25.1128308202714,66.5465292871683,70.320181007142,82.1932278038863,68.2348526115977,69.6706394657615,84.4788014274207,57.5348458148388,60.6234048692697,81.3112112076249,109.534788208725,66.0616223832753,108.524974270829,120.546537426056,191.921384048372,130.814833572124,20.4694779390438,40.6202799526353,39.9951620979532,149.982251208957,171.633530523315,139.231464914909,120.175977750601,111.617096626399,198.389229297434,206.356320030101,339.710612114455,94.9394201731876,112.730765332635,93.7833751728852,94.9732350343343,68.0066400419151,87.9287912375891,100.039400303783,90.860383303797,174.818402455128,161.013166353726,82.9262710685239,88.2736788077957,175.570788242514,180.590044838997,160.886045987337,139.321125663413,113.685980023427,113.810628641398,119.810075228055,131.216009530649,158.136293418902,154.631826750132,147.01966415136,134.82598171675,118.550047544891,91.5529677398195,83.2798592376776,127.250510540037,87.7632354521014,52.3577926954968,119.274405351958,159.195222274679,77.0606245807417,49.5768803065084,56.071576128181,42.6049047548705,66.427840007944,33.8024207464033,114.210564898743,175.815615397586,319.980016418999,63.8648570983082,74.9945201806292,77.8507645322766,64.3997081615498,35.2155521760154,35.3292290974283,58.8115257737201,47.1921491383819,54.1946418551737,38.2835507003661,39.7449830118682,38.0769771728917,126.563823479999,50.0313774942894,68.9996230520902,55.4860295319613,61.393942131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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11772 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P17427,uniprot:Q69ZW4,uniprot:Q6PEE6 | |||
|association_with_transcript=13bp_to_ENSMUST00000003038,NM_007459,uc009klr.2,uc009kls.2_5end | |||
|cluster_id=chr7:148748092..148748175,+ | |||
|description=CAGE_peak_1_at_Ap2a2_5end | |||
|id=chr7:148748092..148748175,+ | |||
|ontology_enrichment_celltype=CL:0002321!8.26e-15!70;CL:0000220!8.26e-15!70;CL:0000055!8.00e-14!50;CL:0002319!2.75e-12!43;CL:0000117!1.85e-11!23;CL:0000337!1.85e-11!23;CL:0000221!2.06e-11!44;CL:0000133!2.06e-11!44;CL:0000393!1.31e-10!39;CL:0000211!1.31e-10!39;CL:0000540!2.17e-09!33;CL:0000047!2.17e-09!33;CL:0000031!2.17e-09!33;CL:0000404!2.17e-09!33;CL:0002371!3.15e-08!118;CL:0000548!6.95e-08!115;CL:0000004!6.95e-08!115;CL:0000255!6.95e-08!115;CL:0000144!6.60e-07!121;CL:0000012!6.60e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.26e-15,70;CL:0002319,2.75e-12,43;CL:0000117,1.85e-11,23;CL:0000337,1.85e-11,23;CL:0000221,2.06e-11,44;CL:0000133,2.06e-11,44;CL:0000393,1.31e-10,39;CL:0000211,1.31e-10,39;CL:0000540,2.17e-09,33;CL:0000047,2.17e-09,33;CL:0000031,2.17e-09,33;CL:0000404,2.17e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.19e-18!75;UBERON:0001016!2.19e-18!75;UBERON:0001017!7.71e-18!73;UBERON:0005743!7.71e-18!73;UBERON:0002020!1.70e-16!34;UBERON:0001049!5.81e-14!52;UBERON:0005068!5.81e-14!52;UBERON:0006241!5.81e-14!52;UBERON:0007135!5.81e-14!52;UBERON:0002791!9.52e-14!29;UBERON:0003528!9.52e-14!29;UBERON:0001893!9.52e-14!29;UBERON:0000955!1.38e-13!50;UBERON:0006238!1.38e-13!50;UBERON:0002616!2.68e-13!49;UBERON:0000956!1.60e-10!21;UBERON:0001869!1.60e-10!21;UBERON:0000203!1.60e-10!21;UBERON:0003080!1.67e-10!40;UBERON:0002780!2.64e-10!39;UBERON:0001890!2.64e-10!39;UBERON:0006240!2.64e-10!39;UBERON:0002619!1.68e-09!17;UBERON:0004121!2.07e-08!102;UBERON:0000924!2.07e-08!102;UBERON:0006601!2.07e-08!102;UBERON:0002021!2.08e-07!10;UBERON:0000411!2.08e-07!10;UBERON:0001950!2.08e-07!10;UBERON:0002346!3.68e-07!71;UBERON:0003075!3.68e-07!71;UBERON:0007284!3.68e-07!71;UBERON:0000033!3.82e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.19e-18,75;UBERON:0001017,7.71e-18,73;UBERON:0002020,1.70e-16,34;UBERON:0000073,6.19e-16,54;UBERON:0001049,5.81e-14,52;UBERON:0005068,5.81e-14,52;UBERON:0006241,5.81e-14,52;UBERON:0007135,5.81e-14,52;UBERON:0003528,9.52e-14,29;UBERON:0002791,9.52e-14,29;UBERON:0001893,9.52e-14,29;UBERON:0000955,5.72e-12,47;UBERON:0006238,5.72e-12,47;UBERON:0002616,1.10e-11,46;UBERON:0004121,1.15e-10,95;UBERON:0000924,1.15e-10,95;UBERON:0006601,1.15e-10,95;UBERON:0000956,1.60e-10,21;UBERON:0001869,1.60e-10,21;UBERON:0000203,1.60e-10,21;UBERON:0003080,1.67e-10,40;UBERON:0002780,2.64e-10,39;UBERON:0001890,2.64e-10,39;UBERON:0006240,2.64e-10,39;UBERON:0002346,9.91e-10,64;UBERON:0003075,9.91e-10,64;UBERON:0007284,9.91e-10,64;UBERON:0002619,1.68e-09,17;UBERON:0011216,8.02e-08,194;UBERON:0002021,2.08e-07,10;UBERON:0000411,2.08e-07,10;UBERON:0001950,2.08e-07,10;UBERON:0010371,8.43e-07,73 | |||
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| |||
|short_description=p1@Ap2a2 | |||
}} |
Revision as of 13:03, 4 August 2015
Short description: | p1@Ap2a2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ap2a2_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENSMUST00000003038, NM_007459, uc009klr.2, uc009kls.2_5end |
EntrezGene: | 11772 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.26e-15 | 70 |
neural cell | 2.75e-12 | 43 |
CNS neuron (sensu Vertebrata) | 1.85e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.85e-11 | 23 |
ectodermal cell | 2.06e-11 | 44 |
neurectodermal cell | 2.06e-11 | 44 |
electrically responsive cell | 1.31e-10 | 39 |
electrically active cell | 1.31e-10 | 39 |
neuron | 2.17e-09 | 33 |
neuronal stem cell | 2.17e-09 | 33 |
neuroblast | 2.17e-09 | 33 |
electrically signaling cell | 2.17e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.19e-18 | 75 |
central nervous system | 7.71e-18 | 73 |
gray matter | 1.70e-16 | 34 |
regional part of nervous system | 6.19e-16 | 54 |
neural tube | 5.81e-14 | 52 |
neural rod | 5.81e-14 | 52 |
future spinal cord | 5.81e-14 | 52 |
neural keel | 5.81e-14 | 52 |
brain grey matter | 9.52e-14 | 29 |
regional part of telencephalon | 9.52e-14 | 29 |
telencephalon | 9.52e-14 | 29 |
brain | 5.72e-12 | 47 |
future brain | 5.72e-12 | 47 |
regional part of brain | 1.10e-11 | 46 |
ectoderm-derived structure | 1.15e-10 | 95 |
ectoderm | 1.15e-10 | 95 |
presumptive ectoderm | 1.15e-10 | 95 |
cerebral cortex | 1.60e-10 | 21 |
cerebral hemisphere | 1.60e-10 | 21 |
pallium | 1.60e-10 | 21 |
anterior neural tube | 1.67e-10 | 40 |
regional part of forebrain | 2.64e-10 | 39 |
forebrain | 2.64e-10 | 39 |
future forebrain | 2.64e-10 | 39 |
neurectoderm | 9.91e-10 | 64 |
neural plate | 9.91e-10 | 64 |
presumptive neural plate | 9.91e-10 | 64 |
regional part of cerebral cortex | 1.68e-09 | 17 |
organ system subdivision | 8.02e-08 | 194 |
occipital lobe | 2.08e-07 | 10 |
visual cortex | 2.08e-07 | 10 |
neocortex | 2.08e-07 | 10 |
ecto-epithelium | 8.43e-07 | 73 |