FFCP PHASE1:Hg19::chrX:38186749..38186774,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6103 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10295 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000474584_5end | |||
|description=CAGE_peak_1_at_RPGR_5end | |||
|id=chrX:38186749..38186774,- | |||
|ontology_enrichment_celltype=CL:0002057!4.96e-16!42;CL:0000738!5.63e-15!140;CL:0000860!1.12e-14!45;CL:0000037!3.73e-13!172;CL:0000566!3.73e-13!172;CL:0002031!1.82e-12!124;CL:0000766!2.58e-12!76;CL:0002032!1.08e-11!165;CL:0000837!1.08e-11!165;CL:0002087!1.42e-11!119;CL:0000557!3.38e-10!71;CL:0000988!8.45e-10!182;CL:0000839!1.95e-09!70;CL:0002009!3.34e-09!65;CL:0000763!5.58e-09!112;CL:0000049!5.58e-09!112;CL:0000791!6.35e-09!18;CL:0000789!6.35e-09!18;CL:0002420!6.35e-09!18;CL:0002419!6.35e-09!18;CL:0000790!6.35e-09!18;CL:0002194!1.09e-08!63;CL:0000576!1.09e-08!63;CL:0000040!1.09e-08!63;CL:0000559!1.09e-08!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.46e-15;33!CL:0002057;2.46e-15;33!CL:0000473;2.05e-10;39!CL:0000234;2.05e-10;39!CL:0000791;6.58e-09;18!CL:0000789;6.58e-09;18!CL:0002419;6.58e-09;18!CL:0000576;2.15e-08;48!CL:0000766;1.06e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.73e-16,42;CL:0002057,4.73e-16,42;CL:0000738,5.96e-16,136;CL:0000037,6.92e-14,168;CL:0000766,1.10e-13,72;CL:0002031,1.98e-13,120;CL:0000473,3.63e-13,48;CL:0000234,3.63e-13,48;CL:0002087,1.64e-12,115;CL:0002032,2.21e-12,161;CL:0000837,2.21e-12,161;CL:0000557,1.93e-11,67;CL:0000988,1.16e-10,177;CL:0000839,1.28e-10,66;CL:0002009,2.00e-10,61;CL:0002194,6.95e-10,59;CL:0000576,6.95e-10,59;CL:0000040,6.95e-10,59;CL:0000559,6.95e-10,59;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0000791,6.20e-09,18;CL:0000789,6.20e-09,18;CL:0002420,6.20e-09,18;CL:0002419,6.20e-09,18;CL:0000790,6.20e-09,18 | |||
|ontology_enrichment_development_v019=CL:0002057;6.40e-12;42!CL:0000790;6.58e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.61e-16!115;UBERON:0002193!4.03e-09!112;UBERON:0002390!5.19e-09!102;UBERON:0003061!5.19e-09!102;UBERON:0001049!3.68e-08!57;UBERON:0005068!3.68e-08!57;UBERON:0006241!3.68e-08!57;UBERON:0007135!3.68e-08!57;UBERON:0001474!2.88e-07!86;UBERON:0002371!4.36e-07!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.58e-16,114;UBERON:0002193,4.64e-10,108;UBERON:0002390,6.34e-10,98;UBERON:0003061,6.34e-10,98;UBERON:0002405,7.19e-09,93;UBERON:0001474,3.58e-08,82;UBERON:0002371,5.54e-08,76;UBERON:0001049,1.17e-07,56;UBERON:0005068,1.17e-07,56;UBERON:0006241,1.17e-07,56;UBERON:0007135,1.17e-07,56;UBERON:0000073,8.94e-07,53;UBERON:0002616,8.94e-07,53 | |||
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| |||
|short_description=p1@RPGR | |||
}} |
Revision as of 05:16, 23 January 2014
Short description: | p1@RPGR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPGR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000474584_5end |
EntrezGene: | RPGR |
HGNC: | 10295 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.73e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.73e-16 | 42 |
leukocyte | 5.96e-16 | 136 |
hematopoietic stem cell | 6.92e-14 | 168 |
myeloid leukocyte | 1.10e-13 | 72 |
hematopoietic lineage restricted progenitor cell | 1.98e-13 | 120 |
defensive cell | 3.63e-13 | 48 |
phagocyte | 3.63e-13 | 48 |
nongranular leukocyte | 1.64e-12 | 115 |
hematopoietic oligopotent progenitor cell | 2.21e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.21e-12 | 161 |
granulocyte monocyte progenitor cell | 1.93e-11 | 67 |
hematopoietic cell | 1.16e-10 | 177 |
myeloid lineage restricted progenitor cell | 1.28e-10 | 66 |
macrophage dendritic cell progenitor | 2.00e-10 | 61 |
monopoietic cell | 6.95e-10 | 59 |
monocyte | 6.95e-10 | 59 |
monoblast | 6.95e-10 | 59 |
promonocyte | 6.95e-10 | 59 |
myeloid cell | 1.00e-09 | 108 |
common myeloid progenitor | 1.00e-09 | 108 |
mature alpha-beta T cell | 6.20e-09 | 18 |
alpha-beta T cell | 6.20e-09 | 18 |
immature T cell | 6.20e-09 | 18 |
mature T cell | 6.20e-09 | 18 |
immature alpha-beta T cell | 6.20e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.58e-16 | 114 |
hemolymphoid system | 4.64e-10 | 108 |
hematopoietic system | 6.34e-10 | 98 |
blood island | 6.34e-10 | 98 |
immune system | 7.19e-09 | 93 |
bone element | 3.58e-08 | 82 |
bone marrow | 5.54e-08 | 76 |
neural tube | 1.17e-07 | 56 |
neural rod | 1.17e-07 | 56 |
future spinal cord | 1.17e-07 | 56 |
neural keel | 1.17e-07 | 56 |
regional part of nervous system | 8.94e-07 | 53 |
regional part of brain | 8.94e-07 | 53 |