FFCP PHASE1:Mm9::chr7:112885079..112885103,+: Difference between revisions
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{{FFCP|EntrezGene=16202|HGNC=|MCL_coexpression_id=22|UniProt=O55222|association_with_transcript=0bp_to_NM_001161724,uc009izb.2_5end|description=CAGE_peak_3_at_Ilk_5end|id=chr7:112885079..112885103,+|ontology_enrichment_celltype=CL:0000117!8.55e-14!23;CL:0000337!8.55e-14!23;CL:0000540!1.05e-10!33;CL:0000047!1.05e-10!33;CL:0000031!1.05e-10!33;CL:0000404!1.05e-10!33;CL:0000221!4.34e-10!44;CL:0000133!4.34e-10!44;CL:0002319!7.19e-10!43;CL:0000393!3.31e-07!39;CL:0000211!3.31e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.90e-15,23;CL:0000337,4.90e-15,23;CL:0000540,5.85e-11,33;CL:0000047,5.85e-11,33;CL:0000031,5.85e-11,33;CL:0000404,5.85e-11,33;CL:0000221,6.88e-10,44;CL:0000133,6.88e-10,44;CL:0002319,1.19e-09,43;CL:0000393,1.17e-07,39;CL:0000211,1.17e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.51e-22!73;UBERON:0005743!9.51e-22!73;UBERON:0001049!9.65e-21!52;UBERON:0005068!9.65e-21!52;UBERON:0006241!9.65e-21!52;UBERON:0007135!9.65e-21!52;UBERON:0000073!1.15e-20!75;UBERON:0001016!1.15e-20!75;UBERON:0002020!2.94e-19!34;UBERON:0002346!6.54e-19!71;UBERON:0003075!6.54e-19!71;UBERON:0007284!6.54e-19!71;UBERON:0007811!7.52e-19!86;UBERON:0000153!9.13e-19!94;UBERON:0000955!2.28e-18!50;UBERON:0006238!2.28e-18!50;UBERON:0000033!3.63e-18!63;UBERON:0002616!9.13e-18!49;UBERON:0003056!2.64e-17!49;UBERON:0003080!3.49e-16!40;UBERON:0002780!6.17e-16!39;UBERON:0001890!6.17e-16!39;UBERON:0006240!6.17e-16!39;UBERON:0002791!6.57e-16!29;UBERON:0003528!6.57e-16!29;UBERON:0001893!6.57e-16!29;UBERON:0004121!2.05e-15!102;UBERON:0000924!2.05e-15!102;UBERON:0006601!2.05e-15!102;UBERON:0000956!1.78e-11!21;UBERON:0001869!1.78e-11!21;UBERON:0000203!1.78e-11!21;UBERON:0002619!3.12e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.50e-23,54;UBERON:0001017,1.53e-22,73;UBERON:0001049,2.13e-22,52;UBERON:0005068,2.13e-22,52;UBERON:0006241,2.13e-22,52;UBERON:0007135,2.13e-22,52;UBERON:0002346,2.52e-22,64;UBERON:0003075,2.52e-22,64;UBERON:0007284,2.52e-22,64;UBERON:0001016,4.52e-21,75;UBERON:0002020,4.66e-21,34;UBERON:0000955,4.40e-19,47;UBERON:0006238,4.40e-19,47;UBERON:0002616,2.00e-18,46;UBERON:0003056,3.14e-18,49;UBERON:0010371,8.92e-18,73;UBERON:0003080,2.22e-17,40;UBERON:0003528,2.29e-17,29;UBERON:0002791,2.29e-17,29;UBERON:0001893,2.29e-17,29;UBERON:0002780,4.16e-17,39;UBERON:0001890,4.16e-17,39;UBERON:0006240,4.16e-17,39;UBERON:0004121,7.26e-17,95;UBERON:0000924,7.26e-17,95;UBERON:0006601,7.26e-17,95;UBERON:0010314,3.56e-15,92;UBERON:0000956,1.76e-12,21;UBERON:0001869,1.76e-12,21;UBERON:0000203,1.76e-12,21;UBERON:0002619,5.18e-10,17;UBERON:0002021,8.74e-07,10;UBERON:0000411,8.74e-07,10;UBERON:0001950,8.74e-07,10|phase1_expression=2.7225304007815,0,0,0,0,0,0,2.1950964985068,0.281577444303333,0.234064526321993,0.68487187290202,0.159544317990673,2.56801094896809,2.44777126773193,0.666219523631325,0.404950534779652,0,2.20823515750766,1.23402990245165,0.84877930359606,1.7008658030214,0.397163804803541,0.783599367416806,0,0,0,0,0.215471232685889,0,0,0,0,0.61506478758457,0,0.288851619751275,0,0,0,2.3440060335714,1.0470474879476,0,1.36609096991689,0.485510353031154,0,0,0,2.34717403304412,2.18025156380447,1.75748946187577,2.52758868796568,0.699932108126813,7.18762821824858,1.34226084846189,3.62681071005672,2.01656279485478,1.28629718017973,0.573066879877513,0.515672092277442,22.8617600771345,19.0436752537932,22.8179305262225,1.35537812827653,0.889294796111139,1.3498495759221,0,0.7104801149461,0.299600110518405,3.84218305321555,15.4497522339632,17.2807601064564,17.0363218694619,20.8525218614777,18.1112203580323,17.5161842877384,21.5652309791032,19.3035945188104,1.10115880999389,4.85211884723713,4.76180253094355,18.0684214190366,23.6952996930241,16.1483144872596,4.74611098302348,4.50210088025344,4.27835093775068,11.1958862479994,19.5049202694771,17.1487490159277,0.454357159999104,0.68014404096107,0,0,0,0,0,0,0.702222100658759,0.511290967734173,0.259786004602869,0,2.95771181531029,0,0,0,0.432982082022428,0.506719730950197,0,0,1.03575153458869,0.445326417194474,1.90833859442749,0.608930956624282,1.38369298353635,1.05505848386836,0.587943535678524,0.753999547978053,0.988779870937496,0,2.65383165584962,1.29413479957927,0.883366073841574,1.45462575940567,1.86391761218122,2.34224637609238,2.30391377494801,0,1.43778149407104,1.19980546198682,1.39777249780371,3.2953940669061,7.32000964509802,31.1622793239904,4.69325664519146,6.64860189058859,4.77912502486988,7.46309810111685,2.54598409625791,0.124406970610093,1.0108910337347,0.841767423545896,1.04096354370163,1.60931473103431,5.22180176435513,3.16480117455002,4.35433594568498,2.94661556655154,6.1843138209421,2.32833033665114,1.72454394346274,2.08016688184601,1.58356011747554,3.5071317188412,1.11218899690239,1.74126083261083,0.61734640922383,1.99034266818493,1.40442637462647,1.28673953557358,1.13665399758237,3.31401236056803,1.17263029990548,1.98068267607116,1.42046841351126,0.983821158737019,1.3884040159864,1.62773761325285,1.60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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16202 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O55222 | |||
|association_with_transcript=0bp_to_NM_001161724,uc009izb.2_5end | |||
|cluster_id=chr7:112885079..112885103,+ | |||
|description=CAGE_peak_3_at_Ilk_5end | |||
|id=chr7:112885079..112885103,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.55e-14!23;CL:0000337!8.55e-14!23;CL:0000540!1.05e-10!33;CL:0000047!1.05e-10!33;CL:0000031!1.05e-10!33;CL:0000404!1.05e-10!33;CL:0000221!4.34e-10!44;CL:0000133!4.34e-10!44;CL:0002319!7.19e-10!43;CL:0000393!3.31e-07!39;CL:0000211!3.31e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.90e-15,23;CL:0000337,4.90e-15,23;CL:0000540,5.85e-11,33;CL:0000047,5.85e-11,33;CL:0000031,5.85e-11,33;CL:0000404,5.85e-11,33;CL:0000221,6.88e-10,44;CL:0000133,6.88e-10,44;CL:0002319,1.19e-09,43;CL:0000393,1.17e-07,39;CL:0000211,1.17e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.51e-22!73;UBERON:0005743!9.51e-22!73;UBERON:0001049!9.65e-21!52;UBERON:0005068!9.65e-21!52;UBERON:0006241!9.65e-21!52;UBERON:0007135!9.65e-21!52;UBERON:0000073!1.15e-20!75;UBERON:0001016!1.15e-20!75;UBERON:0002020!2.94e-19!34;UBERON:0002346!6.54e-19!71;UBERON:0003075!6.54e-19!71;UBERON:0007284!6.54e-19!71;UBERON:0007811!7.52e-19!86;UBERON:0000153!9.13e-19!94;UBERON:0000955!2.28e-18!50;UBERON:0006238!2.28e-18!50;UBERON:0000033!3.63e-18!63;UBERON:0002616!9.13e-18!49;UBERON:0003056!2.64e-17!49;UBERON:0003080!3.49e-16!40;UBERON:0002780!6.17e-16!39;UBERON:0001890!6.17e-16!39;UBERON:0006240!6.17e-16!39;UBERON:0002791!6.57e-16!29;UBERON:0003528!6.57e-16!29;UBERON:0001893!6.57e-16!29;UBERON:0004121!2.05e-15!102;UBERON:0000924!2.05e-15!102;UBERON:0006601!2.05e-15!102;UBERON:0000956!1.78e-11!21;UBERON:0001869!1.78e-11!21;UBERON:0000203!1.78e-11!21;UBERON:0002619!3.12e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.50e-23,54;UBERON:0001017,1.53e-22,73;UBERON:0001049,2.13e-22,52;UBERON:0005068,2.13e-22,52;UBERON:0006241,2.13e-22,52;UBERON:0007135,2.13e-22,52;UBERON:0002346,2.52e-22,64;UBERON:0003075,2.52e-22,64;UBERON:0007284,2.52e-22,64;UBERON:0001016,4.52e-21,75;UBERON:0002020,4.66e-21,34;UBERON:0000955,4.40e-19,47;UBERON:0006238,4.40e-19,47;UBERON:0002616,2.00e-18,46;UBERON:0003056,3.14e-18,49;UBERON:0010371,8.92e-18,73;UBERON:0003080,2.22e-17,40;UBERON:0003528,2.29e-17,29;UBERON:0002791,2.29e-17,29;UBERON:0001893,2.29e-17,29;UBERON:0002780,4.16e-17,39;UBERON:0001890,4.16e-17,39;UBERON:0006240,4.16e-17,39;UBERON:0004121,7.26e-17,95;UBERON:0000924,7.26e-17,95;UBERON:0006601,7.26e-17,95;UBERON:0010314,3.56e-15,92;UBERON:0000956,1.76e-12,21;UBERON:0001869,1.76e-12,21;UBERON:0000203,1.76e-12,21;UBERON:0002619,5.18e-10,17;UBERON:0002021,8.74e-07,10;UBERON:0000411,8.74e-07,10;UBERON:0001950,8.74e-07,10 | |||
|phase1_expression=2.7225304007815,0,0,0,0,0,0,2.1950964985068,0.281577444303333,0.234064526321993,0.68487187290202,0.159544317990673,2.56801094896809,2.44777126773193,0.666219523631325,0.404950534779652,0,2.20823515750766,1.23402990245165,0.84877930359606,1.7008658030214,0.397163804803541,0.783599367416806,0,0,0,0,0.215471232685889,0,0,0,0,0.61506478758457,0,0.288851619751275,0,0,0,2.3440060335714,1.0470474879476,0,1.36609096991689,0.485510353031154,0,0,0,2.34717403304412,2.18025156380447,1.75748946187577,2.52758868796568,0.699932108126813,7.18762821824858,1.34226084846189,3.62681071005672,2.01656279485478,1.28629718017973,0.573066879877513,0.515672092277442,22.8617600771345,19.0436752537932,22.8179305262225,1.35537812827653,0.889294796111139,1.3498495759221,0,0.7104801149461,0.299600110518405,3.84218305321555,15.4497522339632,17.2807601064564,17.0363218694619,20.8525218614777,18.1112203580323,17.5161842877384,21.5652309791032,19.3035945188104,1.10115880999389,4.85211884723713,4.76180253094355,18.0684214190366,23.6952996930241,16.1483144872596,4.74611098302348,4.50210088025344,4.27835093775068,11.1958862479994,19.5049202694771,17.1487490159277,0.454357159999104,0.68014404096107,0,0,0,0,0,0,0.702222100658759,0.511290967734173,0.259786004602869,0,2.95771181531029,0,0,0,0.432982082022428,0.506719730950197,0,0,1.03575153458869,0.445326417194474,1.90833859442749,0.608930956624282,1.38369298353635,1.05505848386836,0.587943535678524,0.753999547978053,0.988779870937496,0,2.65383165584962,1.29413479957927,0.883366073841574,1.45462575940567,1.86391761218122,2.34224637609238,2.30391377494801,0,1.43778149407104,1.19980546198682,1.39777249780371,3.2953940669061,7.32000964509802,31.1622793239904,4.69325664519146,6.64860189058859,4.77912502486988,7.46309810111685,2.54598409625791,0.124406970610093,1.0108910337347,0.841767423545896,1.04096354370163,1.60931473103431,5.22180176435513,3.16480117455002,4.35433594568498,2.94661556655154,6.1843138209421,2.32833033665114,1.72454394346274,2.08016688184601,1.58356011747554,3.5071317188412,1.11218899690239,1.74126083261083,0.61734640922383,1.99034266818493,1.40442637462647,1.28673953557358,1.13665399758237,3.31401236056803,1.17263029990548,1.98068267607116,1.42046841351126,0.983821158737019,1.3884040159864,1.62773761325285,1.60964040839772,1.75148013550754,1.97471819896177,1.14917224855367,0.56748166682099,0,0.219550115291051,0,5.04695876553905,18.4199256158919,0,0.264450566663544,1.91959425481711,0.928946687441754,0.77320476793256,0.605050573870028,0.889512175379481,0.760902504450237,1.42358718463353,0.329397909448022,0,0.596869416123452,0.779856348476481,0,0,0.199141273254367,2.0863469104839,0.571242563048644,1.1270773567308,1.4255592949172,0.969762435838129,1.47285221769669,1.20149420536089,0.295220295959204,0.470996183524124,0.123397163921801,0.296452627087149,0.166845105716094,0.393117990226406,0.224862112384854,0,0,0,0,0.486405680325106,0,0,0,0,0,0,0,0.739012760666419,1.13694847062291,1.14075483509418,0.848725428875941,1.40814148973101,0.837531287209079,0.714130922658041,1.17080188714679,0.472905432318573,1.55025282754142,0.797273843287435,0.983179888294428,0.690739927463582,0.289298117163023,0,0,0,0.275936746304732,3.69266356971921,3.04750385139728,0,0,1.26203287766503,0.780877488593277,1.72338718186239,0.716906393857656,1.33679204449436,1.41538265394416,0.404810701674894,1.75353514746787,1.18586333383957,12.2102100240287,0.283880170416537,3.02711526234334,3.90928702448583,1.15479086080775,0,0.485561272309963,0.302323556964751,0.565815239267694,0.885905678642318,0.307435147943927,0.775284879504663,0.363533729477506,0.356497378384721,0.632073515871632,0,0,0.680879211507576,2.16073312837572,2.06973894052407,1.50035924522115,1.41872186913819,1.96205699362278,2.63278432963394,2.13125464380219,0.23467170806371,1.69465656691056,0.661585194164886,0,0.484393280087717,0.72375509913787,0.596861720015682,0.328281799490123,0.582961673259701,3.33765543618917,0.512612642393558,0.82554747185289,0.555583582109135,0.376736914009382,0,0.457556346413045,3.0596117398894,1.39951452323658,1.10559979043539,0.954670618015114,2.53068794864908,0.813277868507395,0.756037385752609,0.836353184057875,0.218362563746178,0.134864346384821,0.909188012978695,0,0.129614973291793,0,3.94585057078933,1.04661582230785,2.31641886639937,3.30567020184881,2.0665571756437,2.02747350588934,2.46450201156083,1.5624526181274,1.15345278868282,0.966336483304024,0.864090018773596,3.47612232690996,1.01362607645082,1.74608627180206,2.33857481360031,3.75956060901711,3.9736270956253,5.7693815769585,5.61220203263393,7.67345019605922,8.99240318528998,7.66279007039988,4.38560463328886,6.34998154826174,5.2594605981706,0,1.55390167361845,0.62799699626633,0.671538465456314,0,0.750729901804728,0.549454872801795,0,0.501572104035363,12.4245405375755,12.889106622201,13.7494923225455,12.7171354934329,10.2762377965596,3.7769694869485,5.40018000185445,4.5032120322422,6.34399372577886,4.65984280576638,3.52876981786201,1.59609949360412,4.439073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| |||
|short_description=p3@Ilk | |||
}} |
Revision as of 00:04, 4 August 2015
Short description: | p3@Ilk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ilk_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_NM_001161724, uc009izb.2_5end |
EntrezGene: | 16202 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.90e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.90e-15 | 23 |
neuron | 5.85e-11 | 33 |
neuronal stem cell | 5.85e-11 | 33 |
neuroblast | 5.85e-11 | 33 |
electrically signaling cell | 5.85e-11 | 33 |
ectodermal cell | 6.88e-10 | 44 |
neurectodermal cell | 6.88e-10 | 44 |
neural cell | 1.19e-09 | 43 |
electrically responsive cell | 1.17e-07 | 39 |
electrically active cell | 1.17e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 8.50e-23 | 54 |
central nervous system | 1.53e-22 | 73 |
neural tube | 2.13e-22 | 52 |
neural rod | 2.13e-22 | 52 |
future spinal cord | 2.13e-22 | 52 |
neural keel | 2.13e-22 | 52 |
neurectoderm | 2.52e-22 | 64 |
neural plate | 2.52e-22 | 64 |
presumptive neural plate | 2.52e-22 | 64 |
nervous system | 4.52e-21 | 75 |
gray matter | 4.66e-21 | 34 |
brain | 4.40e-19 | 47 |
future brain | 4.40e-19 | 47 |
regional part of brain | 2.00e-18 | 46 |
pre-chordal neural plate | 3.14e-18 | 49 |
ecto-epithelium | 8.92e-18 | 73 |
anterior neural tube | 2.22e-17 | 40 |
brain grey matter | 2.29e-17 | 29 |
regional part of telencephalon | 2.29e-17 | 29 |
telencephalon | 2.29e-17 | 29 |
regional part of forebrain | 4.16e-17 | 39 |
forebrain | 4.16e-17 | 39 |
future forebrain | 4.16e-17 | 39 |
ectoderm-derived structure | 7.26e-17 | 95 |
ectoderm | 7.26e-17 | 95 |
presumptive ectoderm | 7.26e-17 | 95 |
structure with developmental contribution from neural crest | 3.56e-15 | 92 |
cerebral cortex | 1.76e-12 | 21 |
cerebral hemisphere | 1.76e-12 | 21 |
pallium | 1.76e-12 | 21 |
regional part of cerebral cortex | 5.18e-10 | 17 |
occipital lobe | 8.74e-07 | 10 |
visual cortex | 8.74e-07 | 10 |
neocortex | 8.74e-07 | 10 |