FFCP PHASE1:Mm9::chr6:4853250..4853272,+: Difference between revisions
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{{FFCP|EntrezGene=243725|HGNC=|MCL_coexpression_id=1|UniProt=Q7TN74|association_with_transcript=-47bp_to_ENSMUST00000035813,NM_181595,uc009avy.1,uc009avz.1_5end|description=CAGE_peak_3_at_Ppp1r9a_5end|id=chr6:4853250..4853272,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.88e-15!71;UBERON:0003075!3.88e-15!71;UBERON:0007284!3.88e-15!71;UBERON:0004121!5.39e-14!102;UBERON:0000924!5.39e-14!102;UBERON:0006601!5.39e-14!102;UBERON:0000033!6.79e-14!63;UBERON:0000955!9.72e-13!50;UBERON:0006238!9.72e-13!50;UBERON:0001017!1.15e-12!73;UBERON:0005743!1.15e-12!73;UBERON:0000073!1.68e-12!75;UBERON:0001016!1.68e-12!75;UBERON:0001049!1.77e-12!52;UBERON:0005068!1.77e-12!52;UBERON:0006241!1.77e-12!52;UBERON:0007135!1.77e-12!52;UBERON:0002616!3.61e-12!49;UBERON:0003056!1.98e-11!49;UBERON:0003080!4.02e-10!40;UBERON:0002020!4.22e-10!34;UBERON:0002780!1.40e-09!39;UBERON:0001890!1.40e-09!39;UBERON:0006240!1.40e-09!39;UBERON:0002791!4.00e-09!29;UBERON:0003528!4.00e-09!29;UBERON:0001893!4.00e-09!29;UBERON:0000025!1.73e-07!114;UBERON:0000956!2.39e-07!21;UBERON:0001869!2.39e-07!21;UBERON:0000203!2.39e-07!21;UBERON:0004111!4.69e-07!122;UBERON:0000468!6.43e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.19e-16,54;UBERON:0001049,5.74e-15,52;UBERON:0005068,5.74e-15,52;UBERON:0006241,5.74e-15,52;UBERON:0007135,5.74e-15,52;UBERON:0001017,9.51e-15,73;UBERON:0002346,3.46e-14,64;UBERON:0003075,3.46e-14,64;UBERON:0007284,3.46e-14,64;UBERON:0000955,3.61e-14,47;UBERON:0006238,3.61e-14,47;UBERON:0001016,5.07e-14,75;UBERON:0002020,1.79e-13,34;UBERON:0002616,2.65e-13,46;UBERON:0003528,6.58e-13,29;UBERON:0002791,6.58e-13,29;UBERON:0001893,6.58e-13,29;UBERON:0000956,7.80e-12,21;UBERON:0001869,7.80e-12,21;UBERON:0000203,7.80e-12,21;UBERON:0010314,4.10e-11,92;UBERON:0010371,4.63e-11,73;UBERON:0003080,6.01e-11,40;UBERON:0004121,7.39e-11,95;UBERON:0000924,7.39e-11,95;UBERON:0006601,7.39e-11,95;UBERON:0003056,1.97e-10,49;UBERON:0002619,2.89e-10,17;UBERON:0002780,3.82e-10,39;UBERON:0001890,3.82e-10,39;UBERON:0006240,3.82e-10,39;UBERON:0002021,7.65e-10,10;UBERON:0000411,7.65e-10,10;UBERON:0001950,7.65e-10,10|phase1_expression=0.80074423552397,0,0,0,0,0.671517087647559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0.866554859253824,0.332469290716985,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,1.61853168687678,0.528990979272033,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,1.45165457231869,0.675029691658453,1.26194976810829,0.285650984403804,1.10434270475807,1.83736198822431,1.0543001812006,0.919218786610021,1.10115880999389,1.65993539510744,1.68967186581868,0.791317726381163,0.640413505216868,0,0.837548997004143,2.8138130501584,2.59757021220577,0.883885756421003,1.28134512719193,1.3047961207771,0.530083353332288,0.302286240427142,0.579728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0.422530259330042,0,0,0,0,0,0,0.34255163915718,0,1.48442139064825,1.04091196059682,0.608930956624282,0.461230994512117,0.753613202763113,1.05829836422134,1.50799909595611,0.741584903203122,0.144599356919912,0,0.970601099684455,0,0,0,2.04946557908083,2.09446706813455,0.766371165625774,0,0,0,2.54644086988199,3.20250421973039,4.27224797183739,2.9550134432687,3.83573185995496,1.45451631191692,3.24482526135515,0.712875546952214,0.248813941220186,0.252722758433675,0.420883711772948,0.520481771850815,0.689706313300419,0.360124259610698,0.753524089178575,1.63287597963187,1.5373646434182,1.49922759295566,0.776110112217047,0,0.567318240503458,1.05570674498369,0.43839146485515,1.11218899690239,0,0.411564272815887,0.199034266818493,0,0,0,0.621377317606506,0.469052119962192,0.720248245844059,1.65721314909647,0.590292695242212,0.771335564436891,0.930135779001631,1.07309360559848,1.05088808130453,0.493679549740441,0.164167464079095,0.486412857275134,0.584799949701329,0.219550115291051,0.536825675041487,1.89260953707715,4.73361216944708,0,0.264450566663544,0.639864751605702,0.928946687441754,0.38660238396628,0.605050573870028,0.444756087689741,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,1.36474860983384,0,0.432276099749388,0.199141273254367,0,0.228497025219458,1.1270773567308,0.203651327845314,0.581857461502877,1.05203729835478,0.632365371242573,0.442830443938806,0.470996183524124,0.493588655687202,0,0.166845105716094,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0,0.287696137450811,0.972811360650212,1.37280706594041,0,0.372140947668503,0.624075346229121,0,0,0,0.739012760666419,0.568474235311454,0.162964976442026,0.169745085775188,0.469380496577004,1.17254380209271,0.476087281772027,0.975668239288994,1.41871629695572,1.55025282754142,1.75400245523236,0.81931657357869,1.72684981865896,1.01254341007058,0,0,0,0.275936746304732,3.21101179975584,2.22702204525186,0,0,1.26203287766503,0,0.430846795465598,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:243725 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q7TN74 | |||
|association_with_transcript=-47bp_to_ENSMUST00000035813,NM_181595,uc009avy.1,uc009avz.1_5end | |||
|cluster_id=chr6:4853250..4853272,+ | |||
|description=CAGE_peak_3_at_Ppp1r9a_5end | |||
|id=chr6:4853250..4853272,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.88e-15!71;UBERON:0003075!3.88e-15!71;UBERON:0007284!3.88e-15!71;UBERON:0004121!5.39e-14!102;UBERON:0000924!5.39e-14!102;UBERON:0006601!5.39e-14!102;UBERON:0000033!6.79e-14!63;UBERON:0000955!9.72e-13!50;UBERON:0006238!9.72e-13!50;UBERON:0001017!1.15e-12!73;UBERON:0005743!1.15e-12!73;UBERON:0000073!1.68e-12!75;UBERON:0001016!1.68e-12!75;UBERON:0001049!1.77e-12!52;UBERON:0005068!1.77e-12!52;UBERON:0006241!1.77e-12!52;UBERON:0007135!1.77e-12!52;UBERON:0002616!3.61e-12!49;UBERON:0003056!1.98e-11!49;UBERON:0003080!4.02e-10!40;UBERON:0002020!4.22e-10!34;UBERON:0002780!1.40e-09!39;UBERON:0001890!1.40e-09!39;UBERON:0006240!1.40e-09!39;UBERON:0002791!4.00e-09!29;UBERON:0003528!4.00e-09!29;UBERON:0001893!4.00e-09!29;UBERON:0000025!1.73e-07!114;UBERON:0000956!2.39e-07!21;UBERON:0001869!2.39e-07!21;UBERON:0000203!2.39e-07!21;UBERON:0004111!4.69e-07!122;UBERON:0000468!6.43e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.19e-16,54;UBERON:0001049,5.74e-15,52;UBERON:0005068,5.74e-15,52;UBERON:0006241,5.74e-15,52;UBERON:0007135,5.74e-15,52;UBERON:0001017,9.51e-15,73;UBERON:0002346,3.46e-14,64;UBERON:0003075,3.46e-14,64;UBERON:0007284,3.46e-14,64;UBERON:0000955,3.61e-14,47;UBERON:0006238,3.61e-14,47;UBERON:0001016,5.07e-14,75;UBERON:0002020,1.79e-13,34;UBERON:0002616,2.65e-13,46;UBERON:0003528,6.58e-13,29;UBERON:0002791,6.58e-13,29;UBERON:0001893,6.58e-13,29;UBERON:0000956,7.80e-12,21;UBERON:0001869,7.80e-12,21;UBERON:0000203,7.80e-12,21;UBERON:0010314,4.10e-11,92;UBERON:0010371,4.63e-11,73;UBERON:0003080,6.01e-11,40;UBERON:0004121,7.39e-11,95;UBERON:0000924,7.39e-11,95;UBERON:0006601,7.39e-11,95;UBERON:0003056,1.97e-10,49;UBERON:0002619,2.89e-10,17;UBERON:0002780,3.82e-10,39;UBERON:0001890,3.82e-10,39;UBERON:0006240,3.82e-10,39;UBERON:0002021,7.65e-10,10;UBERON:0000411,7.65e-10,10;UBERON:0001950,7.65e-10,10 | |||
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|short_description=p3@Ppp1r9a | |||
}} |
Revision as of 19:57, 5 August 2015
Short description: | p3@Ppp1r9a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ppp1r9a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -47bp_to_ENSMUST00000035813, NM_181595, uc009avy.1, uc009avz.1_5end |
EntrezGene: | 243725 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.19e-16 | 54 |
neural tube | 5.74e-15 | 52 |
neural rod | 5.74e-15 | 52 |
future spinal cord | 5.74e-15 | 52 |
neural keel | 5.74e-15 | 52 |
central nervous system | 9.51e-15 | 73 |
neurectoderm | 3.46e-14 | 64 |
neural plate | 3.46e-14 | 64 |
presumptive neural plate | 3.46e-14 | 64 |
brain | 3.61e-14 | 47 |
future brain | 3.61e-14 | 47 |
nervous system | 5.07e-14 | 75 |
gray matter | 1.79e-13 | 34 |
regional part of brain | 2.65e-13 | 46 |
brain grey matter | 6.58e-13 | 29 |
regional part of telencephalon | 6.58e-13 | 29 |
telencephalon | 6.58e-13 | 29 |
cerebral cortex | 7.80e-12 | 21 |
cerebral hemisphere | 7.80e-12 | 21 |
pallium | 7.80e-12 | 21 |
structure with developmental contribution from neural crest | 4.10e-11 | 92 |
ecto-epithelium | 4.63e-11 | 73 |
anterior neural tube | 6.01e-11 | 40 |
ectoderm-derived structure | 7.39e-11 | 95 |
ectoderm | 7.39e-11 | 95 |
presumptive ectoderm | 7.39e-11 | 95 |
pre-chordal neural plate | 1.97e-10 | 49 |
regional part of cerebral cortex | 2.89e-10 | 17 |
regional part of forebrain | 3.82e-10 | 39 |
forebrain | 3.82e-10 | 39 |
future forebrain | 3.82e-10 | 39 |
occipital lobe | 7.65e-10 | 10 |
visual cortex | 7.65e-10 | 10 |
neocortex | 7.65e-10 | 10 |