FFCP PHASE1:Mm9::chr6:124706496..124706545,-: Difference between revisions
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{{FFCP|EntrezGene=13498|HGNC=|MCL_coexpression_id=1354|UniProt=O35126|association_with_transcript=0bp_to_ENSMUST00000088357,NM_007881,uc009drr.1_5end|description=CAGE_peak_4_at_Atn1_5end|id=chr6:124706496..124706545,-|ontology_enrichment_celltype=CL:0000117!3.64e-13!23;CL:0000337!3.64e-13!23;CL:0000055!4.97e-11!50;CL:0002319!6.07e-11!43;CL:0000221!1.50e-10!44;CL:0000133!1.50e-10!44;CL:0002321!5.50e-10!70;CL:0000220!5.50e-10!70;CL:0000393!2.84e-09!39;CL:0000211!2.84e-09!39;CL:0000540!3.08e-09!33;CL:0000047!3.08e-09!33;CL:0000031!3.08e-09!33;CL:0000404!3.08e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.58e-13,23;CL:0000337,3.58e-13,23;CL:0002319,5.99e-11,43;CL:0000221,1.48e-10,44;CL:0000133,1.48e-10,44;CL:0002321,5.44e-10,70;CL:0000393,2.81e-09,39;CL:0000211,2.81e-09,39;CL:0000540,3.05e-09,33;CL:0000047,3.05e-09,33;CL:0000031,3.05e-09,33;CL:0000404,3.05e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.90e-20!73;UBERON:0005743!1.90e-20!73;UBERON:0000073!1.34e-19!75;UBERON:0001016!1.34e-19!75;UBERON:0001049!5.68e-18!52;UBERON:0005068!5.68e-18!52;UBERON:0006241!5.68e-18!52;UBERON:0007135!5.68e-18!52;UBERON:0000955!1.69e-16!50;UBERON:0006238!1.69e-16!50;UBERON:0002616!1.89e-16!49;UBERON:0004121!9.32e-16!102;UBERON:0000924!9.32e-16!102;UBERON:0006601!9.32e-16!102;UBERON:0002020!1.28e-14!34;UBERON:0003080!2.16e-12!40;UBERON:0002346!3.98e-12!71;UBERON:0003075!3.98e-12!71;UBERON:0007284!3.98e-12!71;UBERON:0000033!5.06e-12!63;UBERON:0002780!5.43e-12!39;UBERON:0001890!5.43e-12!39;UBERON:0006240!5.43e-12!39;UBERON:0002791!9.97e-12!29;UBERON:0003528!9.97e-12!29;UBERON:0001893!9.97e-12!29;UBERON:0003056!2.42e-09!49;UBERON:0000956!5.11e-08!21;UBERON:0001869!5.11e-08!21;UBERON:0000203!5.11e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.85e-20,73;UBERON:0001016,1.30e-19,75;UBERON:0000073,1.82e-19,54;UBERON:0001049,5.55e-18,52;UBERON:0005068,5.55e-18,52;UBERON:0006241,5.55e-18,52;UBERON:0007135,5.55e-18,52;UBERON:0004121,2.66e-16,95;UBERON:0000924,2.66e-16,95;UBERON:0006601,2.66e-16,95;UBERON:0002020,1.26e-14,34;UBERON:0000955,1.29e-14,47;UBERON:0006238,1.29e-14,47;UBERON:0002616,1.45e-14,46;UBERON:0002346,7.01e-13,64;UBERON:0003075,7.01e-13,64;UBERON:0007284,7.01e-13,64;UBERON:0010371,1.10e-12,73;UBERON:0003080,2.12e-12,40;UBERON:0002780,5.36e-12,39;UBERON:0001890,5.36e-12,39;UBERON:0006240,5.36e-12,39;UBERON:0003528,9.83e-12,29;UBERON:0002791,9.83e-12,29;UBERON:0001893,9.83e-12,29;UBERON:0003056,2.39e-09,49;UBERON:0010314,3.47e-08,92;UBERON:0000956,5.07e-08,21;UBERON:0001869,5.07e-08,21;UBERON:0000203,5.07e-08,21|phase1_expression=3.52327463630547,11.5161884520989,15.0149748998547,11.4936400296595,10.5188103288733,4.19698179779725,2.80335168714631,1.42035655785734,8.024957162645,9.36258105287974,0.34243593645101,1.11681022593471,4.96482116800497,6.90621179110079,0.333109761815663,0.404950534779652,0,0.315462165358238,1.23402990245165,1.69755860719212,5.18764069921526,0.595745707205312,1.30599894569468,2.55987876469451,1.37645568640302,10.3361753540704,6.8921919385452,5.817723282519,5.89072600314759,3.52842181663903,1.77384408524244,1.90509202037889,3.69038872550742,0,1.73310971850765,1.99481574430191,3.47087905646027,1.67412652294763,0.7813353445238,1.0470474879476,0.588231488031014,2.04913645487534,2.42755176515577,2.89562681343828,3.85232338634155,3.48738829107195,14.8654355426127,4.79655344036982,7.68901639570651,5.44403717407994,4.4795654920116,7.18762821824858,1.34226084846189,6.5282592781021,4.7053131879945,6.43148590089868,6.87680255853016,6.18806510732931,14.3644687210314,10.0508286061686,13.9442908771359,11.1818695582814,6.22506357277798,4.49949858640699,1.97773272513395,8.5257613793532,7.19040265244171,10.373894243682,7.77672092313582,7.02030879324791,6.09942387919008,10.2834354385369,7.73039893330647,6.49201235839256,6.22995561618536,9.19218786610021,12.1127469099328,12.5133591323484,10.5988507946808,10.1552441552249,10.5210790142771,9.89735404057844,8.93385596804419,6.19038871034848,10.5430790965999,11.490514833473,13.810053037513,10.2519695203915,2.34751199332871,3.77857800533928,4.34796733052517,4.30211938490693,2.03991400112325,4.31762553310254,3.24888208723835,3.58421509677868,3.65155492342555,6.47635225796619,4.67614808285164,3.5333957451034,3.09855523508697,6.41632387071589,15.2883143823987,28.4426681261332,1.73192832808971,2.02687892380079,2.02209778005913,4.22480354960522,5.17875767294343,6.67989625791711,3.29622120855658,3.34912026143355,2.30615497256059,3.16517545160507,3.99801604261396,6.03199638382442,3.95511948374998,6.2177723475562,2.65383165584962,4.85300549842228,2.42925670306433,0.484875253135222,5.59175283654366,7.31951992528868,9.21565509979202,6.89734049063197,0.599075622529601,0.599902730993408,0.381210681219194,7.18995069143149,5.03250663100489,14.7015591972051,7.47444576826789,6.90431734791892,8.3115217823824,8.59878694259116,5.19380755636613,2.11491850037158,2.27450482590307,4.41927897361595,2.73252930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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13498 | |||
|HGNC= | |||
|MCL_coexpression_id=1354 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O35126 | |||
|association_with_transcript=0bp_to_ENSMUST00000088357,NM_007881,uc009drr.1_5end | |||
|cluster_id=chr6:124706496..124706545,- | |||
|description=CAGE_peak_4_at_Atn1_5end | |||
|id=chr6:124706496..124706545,- | |||
|ontology_enrichment_celltype=CL:0000117!3.64e-13!23;CL:0000337!3.64e-13!23;CL:0000055!4.97e-11!50;CL:0002319!6.07e-11!43;CL:0000221!1.50e-10!44;CL:0000133!1.50e-10!44;CL:0002321!5.50e-10!70;CL:0000220!5.50e-10!70;CL:0000393!2.84e-09!39;CL:0000211!2.84e-09!39;CL:0000540!3.08e-09!33;CL:0000047!3.08e-09!33;CL:0000031!3.08e-09!33;CL:0000404!3.08e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.58e-13,23;CL:0000337,3.58e-13,23;CL:0002319,5.99e-11,43;CL:0000221,1.48e-10,44;CL:0000133,1.48e-10,44;CL:0002321,5.44e-10,70;CL:0000393,2.81e-09,39;CL:0000211,2.81e-09,39;CL:0000540,3.05e-09,33;CL:0000047,3.05e-09,33;CL:0000031,3.05e-09,33;CL:0000404,3.05e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.90e-20!73;UBERON:0005743!1.90e-20!73;UBERON:0000073!1.34e-19!75;UBERON:0001016!1.34e-19!75;UBERON:0001049!5.68e-18!52;UBERON:0005068!5.68e-18!52;UBERON:0006241!5.68e-18!52;UBERON:0007135!5.68e-18!52;UBERON:0000955!1.69e-16!50;UBERON:0006238!1.69e-16!50;UBERON:0002616!1.89e-16!49;UBERON:0004121!9.32e-16!102;UBERON:0000924!9.32e-16!102;UBERON:0006601!9.32e-16!102;UBERON:0002020!1.28e-14!34;UBERON:0003080!2.16e-12!40;UBERON:0002346!3.98e-12!71;UBERON:0003075!3.98e-12!71;UBERON:0007284!3.98e-12!71;UBERON:0000033!5.06e-12!63;UBERON:0002780!5.43e-12!39;UBERON:0001890!5.43e-12!39;UBERON:0006240!5.43e-12!39;UBERON:0002791!9.97e-12!29;UBERON:0003528!9.97e-12!29;UBERON:0001893!9.97e-12!29;UBERON:0003056!2.42e-09!49;UBERON:0000956!5.11e-08!21;UBERON:0001869!5.11e-08!21;UBERON:0000203!5.11e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.85e-20,73;UBERON:0001016,1.30e-19,75;UBERON:0000073,1.82e-19,54;UBERON:0001049,5.55e-18,52;UBERON:0005068,5.55e-18,52;UBERON:0006241,5.55e-18,52;UBERON:0007135,5.55e-18,52;UBERON:0004121,2.66e-16,95;UBERON:0000924,2.66e-16,95;UBERON:0006601,2.66e-16,95;UBERON:0002020,1.26e-14,34;UBERON:0000955,1.29e-14,47;UBERON:0006238,1.29e-14,47;UBERON:0002616,1.45e-14,46;UBERON:0002346,7.01e-13,64;UBERON:0003075,7.01e-13,64;UBERON:0007284,7.01e-13,64;UBERON:0010371,1.10e-12,73;UBERON:0003080,2.12e-12,40;UBERON:0002780,5.36e-12,39;UBERON:0001890,5.36e-12,39;UBERON:0006240,5.36e-12,39;UBERON:0003528,9.83e-12,29;UBERON:0002791,9.83e-12,29;UBERON:0001893,9.83e-12,29;UBERON:0003056,2.39e-09,49;UBERON:0010314,3.47e-08,92;UBERON:0000956,5.07e-08,21;UBERON:0001869,5.07e-08,21;UBERON:0000203,5.07e-08,21 | |||
|phase1_expression=3.52327463630547,11.5161884520989,15.0149748998547,11.4936400296595,10.5188103288733,4.19698179779725,2.80335168714631,1.42035655785734,8.024957162645,9.36258105287974,0.34243593645101,1.11681022593471,4.96482116800497,6.90621179110079,0.333109761815663,0.404950534779652,0,0.315462165358238,1.23402990245165,1.69755860719212,5.18764069921526,0.595745707205312,1.30599894569468,2.55987876469451,1.37645568640302,10.3361753540704,6.8921919385452,5.817723282519,5.89072600314759,3.52842181663903,1.77384408524244,1.90509202037889,3.69038872550742,0,1.73310971850765,1.99481574430191,3.47087905646027,1.67412652294763,0.7813353445238,1.0470474879476,0.588231488031014,2.04913645487534,2.42755176515577,2.89562681343828,3.85232338634155,3.48738829107195,14.8654355426127,4.79655344036982,7.68901639570651,5.44403717407994,4.4795654920116,7.18762821824858,1.34226084846189,6.5282592781021,4.7053131879945,6.43148590089868,6.87680255853016,6.18806510732931,14.3644687210314,10.0508286061686,13.9442908771359,11.1818695582814,6.22506357277798,4.49949858640699,1.97773272513395,8.5257613793532,7.19040265244171,10.373894243682,7.77672092313582,7.02030879324791,6.09942387919008,10.2834354385369,7.73039893330647,6.49201235839256,6.22995561618536,9.19218786610021,12.1127469099328,12.5133591323484,10.5988507946808,10.1552441552249,10.5210790142771,9.89735404057844,8.93385596804419,6.19038871034848,10.5430790965999,11.490514833473,13.810053037513,10.2519695203915,2.34751199332871,3.77857800533928,4.34796733052517,4.30211938490693,2.03991400112325,4.31762553310254,3.24888208723835,3.58421509677868,3.65155492342555,6.47635225796619,4.67614808285164,3.5333957451034,3.09855523508697,6.41632387071589,15.2883143823987,28.4426681261332,1.73192832808971,2.02687892380079,2.02209778005913,4.22480354960522,5.17875767294343,6.67989625791711,3.29622120855658,3.34912026143355,2.30615497256059,3.16517545160507,3.99801604261396,6.03199638382442,3.95511948374998,6.2177723475562,2.65383165584962,4.85300549842228,2.42925670306433,0.484875253135222,5.59175283654366,7.31951992528868,9.21565509979202,6.89734049063197,0.599075622529601,0.599902730993408,0.381210681219194,7.18995069143149,5.03250663100489,14.7015591972051,7.47444576826789,6.90431734791892,8.3115217823824,8.59878694259116,5.19380755636613,2.11491850037158,2.27450482590307,4.41927897361595,2.73252930221678,1.37941262660084,2.88099407688559,2.41127708537144,5.44291993210623,3.45907044769094,2.99845518591132,3.3631438196072,2.15567992932842,3.78212160335639,4.57472922826267,2.6303487891309,1.66828349535359,4.179025998266,2.88094990971121,2.7864797354589,0,0.51469581422943,0.852490498186778,2.69263504296152,1.87620847984877,2.16074473753218,4.02466050494857,2.36117078096885,1.69693824176116,2.79040733700489,3.21928081679543,2.10177616260905,3.12663714835613,3.447516745661,4.13450928683864,3.21639972335731,1.53685080703735,2.54992195644706,5.46753866266731,7.82075054082562,9.58214470653014,3.96675849995316,2.13288250535234,3.0190767341857,2.96395161040815,2.62188582010345,2.00140239460383,3.61428689613862,8.0669940462567,3.29397909448022,4.27269854960458,3.38226002469956,4.28920991662064,5.39291645192533,5.40345124686736,6.37252074413975,1.89667900953082,2.62771579002376,1.1270773567308,4.2766778847516,3.29719228184964,3.85747009396752,3.60448261608267,5.46157547524528,4.08196692387575,3.20832626196681,1.77871576252289,0.667380422864376,0.786235980452812,0.899448449539415,1.01430060694251,1.20588579876208,0.763877555344259,2.5892652370573,2.2698931748505,2.19649130550465,5.75072826109418,1.48856379067401,4.05648975048929,4.2938409251009,2.15276896226295,3.37710464954357,3.51031061316549,2.4633883530163,2.28150967018836,2.03694102930226,1.40814148973101,4.18765643604539,2.38043640886014,6.04914308359176,3.31033802623001,2.87904096543407,3.82691444777969,3.27726629431476,4.66249451037918,4.19482269886384,1.50791283939272,4.35124547054968,5.4094070032094,4.41498794087572,4.97706828962155,7.73597131508541,2.78689407140348,4.54447668967871,2.52406575533005,1.95219372148319,2.80050417052639,3.58453196928828,2.89638276307112,5.66153061577665,5.66734982344852,4.09158201075837,3.95287777946523,4.81981974632711,4.25820255624806,5.69809931735217,4.72372182125371,6.59880491890142,3.98235415019888,0.728341908464944,2.11626489875326,2.45186603682668,4.42952839321159,3.99665692327106,2.58428293168221,6.5436071305951,3.20847640546249,4.10847785316561,9.48767477174989,6.18813259489121,5.10659408630682,2.88097750450096,4.01011919726539,3.85806663056866,4.61084607469911,5.88617098086833,3.9491764944509,6.08929898229199,3.05073220482823,5.50763384245932,5.95426674748397,7.58476763530808,3.71368181400583,5.1869115438214,4.8942661041286,2.62625439592098,6.41257840585672,7.78786268444141,1.36696704638282,3.714963623338,1.11116716421827,0.376736914009382,0.683471138605126,0.457556346413045,0.679913719975421,1.53946597556024,0.829199842826543,6.68269432610579,3.79603192297362,4.26970880966382,3.34816556547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| |||
|short_description=p4@Atn1 | |||
}} |
Revision as of 03:14, 5 August 2015
Short description: | p4@Atn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Atn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1354 |
Association with transcript: | 0bp_to_ENSMUST00000088357, NM_007881, uc009drr.1_5end |
EntrezGene: | 13498 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.58e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.58e-13 | 23 |
neural cell | 5.99e-11 | 43 |
ectodermal cell | 1.48e-10 | 44 |
neurectodermal cell | 1.48e-10 | 44 |
embryonic cell | 5.44e-10 | 70 |
electrically responsive cell | 2.81e-09 | 39 |
electrically active cell | 2.81e-09 | 39 |
neuron | 3.05e-09 | 33 |
neuronal stem cell | 3.05e-09 | 33 |
neuroblast | 3.05e-09 | 33 |
electrically signaling cell | 3.05e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.85e-20 | 73 |
nervous system | 1.30e-19 | 75 |
regional part of nervous system | 1.82e-19 | 54 |
neural tube | 5.55e-18 | 52 |
neural rod | 5.55e-18 | 52 |
future spinal cord | 5.55e-18 | 52 |
neural keel | 5.55e-18 | 52 |
ectoderm-derived structure | 2.66e-16 | 95 |
ectoderm | 2.66e-16 | 95 |
presumptive ectoderm | 2.66e-16 | 95 |
gray matter | 1.26e-14 | 34 |
brain | 1.29e-14 | 47 |
future brain | 1.29e-14 | 47 |
regional part of brain | 1.45e-14 | 46 |
neurectoderm | 7.01e-13 | 64 |
neural plate | 7.01e-13 | 64 |
presumptive neural plate | 7.01e-13 | 64 |
ecto-epithelium | 1.10e-12 | 73 |
anterior neural tube | 2.12e-12 | 40 |
regional part of forebrain | 5.36e-12 | 39 |
forebrain | 5.36e-12 | 39 |
future forebrain | 5.36e-12 | 39 |
brain grey matter | 9.83e-12 | 29 |
regional part of telencephalon | 9.83e-12 | 29 |
telencephalon | 9.83e-12 | 29 |
pre-chordal neural plate | 2.39e-09 | 49 |
structure with developmental contribution from neural crest | 3.47e-08 | 92 |
cerebral cortex | 5.07e-08 | 21 |
cerebral hemisphere | 5.07e-08 | 21 |
pallium | 5.07e-08 | 21 |