FFCP PHASE1:Hg19::chr9:139247484..139247490,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=26086 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17858 | |||
|TSSclassifier=weak | |||
|UniProt=Q86YR5 | |||
|association_with_transcript=-18bp_to_ENST00000429455,NM_001145639,uc011mdu.1_5end | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_8_at_GPSM1_5end | |||
|id=chr9:139247484..139247490,+ | |||
|ontology_enrichment_celltype=CL:0000669!4.39e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002541;3.16e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0010227;1.18e-19;1!UBERON:0010226;1.18e-19;1!UBERON:0000358;2.97e-19;1!UBERON:0004140;4.69e-19;1!UBERON:0005062;7.08e-19;4!UBERON:0007284;7.08e-19;4 | |||
|ontology_enrichment_disease=DOID:114!3.66e-10!2 | |||
|ontology_enrichment_disease_v019=DOID:114;2.49e-37;2!DOID:178;2.06e-19;1!DOID:326;2.06e-19;1!DOID:3978;2.06e-19;1!DOID:3394;2.06e-19;1!DOID:5844;2.06e-19;1!DOID:1287;3.11e-19;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.27e-37,2;DOID:178,1.88e-19,1;DOID:326,1.88e-19,1;DOID:3978,1.88e-19,1;DOID:3394,1.88e-19,1;DOID:5844,1.88e-19,1;DOID:1287,2.98e-19,4 | |||
|ontology_enrichment_uberon=UBERON:0007100!2.08e-09!27;UBERON:0003103!3.12e-09!69;UBERON:0003127!3.68e-09!2;UBERON:0004151!4.85e-07!3;UBERON:0003978!6.47e-07!3;UBERON:0009751!6.47e-07!3;UBERON:0000946!6.47e-07!3;UBERON:0002523!6.47e-07!3;UBERON:0005983!6.47e-07!3;UBERON:0002165!6.47e-07!3;UBERON:0002062!6.47e-07!3;UBERON:0007280!6.47e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.20e-45;25!UBERON:0004151;2.34e-25;3!UBERON:0003978;8.42e-25;3!UBERON:0000946;8.42e-25;3!UBERON:0000948;1.44e-20;22!UBERON:0002084;1.18e-19;1!UBERON:0002079;1.18e-19;1!UBERON:0002082;1.18e-19;1!UBERON:0002135;2.06e-19;1!UBERON:0002146;4.69e-19;1!UBERON:0005623;4.69e-19;1!UBERON:0003103;3.34e-11;61!UBERON:0002081;1.64e-10;2!UBERON:0002133;2.17e-10;2!UBERON:0010313;3.97e-08;10!UBERON:0003124;3.16e-07;3!UBERON:0000920;3.16e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,2.82e-42,27;UBERON:0004151,2.34e-25,3;UBERON:0003978,7.93e-25,3;UBERON:0009751,7.93e-25,3;UBERON:0000946,7.93e-25,3;UBERON:0002523,7.93e-25,3;UBERON:0005983,7.93e-25,3;UBERON:0002165,7.93e-25,3;UBERON:0002062,7.93e-25,3;UBERON:0007280,7.93e-25,3;UBERON:0003103,5.58e-21,68;UBERON:0002084,1.08e-19,1;UBERON:0002082,1.08e-19,1;UBERON:0010226,1.08e-19,1;UBERON:0002079,1.30e-19,1;UBERON:0002135,2.25e-19,1;UBERON:0002146,3.91e-19,1;UBERON:0005623,3.91e-19,1;UBERON:0000948,7.05e-19,24;UBERON:0005498,7.05e-19,24;UBERON:0004140,7.05e-19,24;UBERON:0009881,7.05e-19,24;UBERON:0004141,7.05e-19,24;UBERON:0003084,7.05e-19,24;UBERON:0007005,7.05e-19,24;UBERON:0004139,7.05e-19,24;UBERON:0004291,7.05e-19,24;UBERON:0004797,3.14e-11,7;UBERON:0002081,1.72e-10,2;UBERON:0010227,1.72e-10,2;UBERON:0002133,2.27e-10,2;UBERON:0001009,6.84e-10,112;UBERON:0010313,3.90e-08,10;UBERON:0002342,3.90e-08,10;UBERON:0005062,3.90e-08,10;UBERON:0007023,1.77e-07,114;UBERON:0000920,3.35e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,1.27600463892768,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.0821154570532092,0,0.176512253383001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.74780082162832,1.3749625440701,0,4.99197501247478,9.01374701086799,5.57928643604681,1.2764859772478,0,0,0.0787831823072236,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.394028536495991,2.8325477592899,0,0,0,7.14695326373367,7.94510364438518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0.99798106963804,0,0,0,0,2.34640942403454,0.122241444182866,0.406896178315738,0,0,0 | |||
|short_description=p8@GPSM1 | |||
}} |
Revision as of 04:06, 23 January 2014
Short description: | p8@GPSM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_GPSM1_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | -18bp_to_ENST00000429455, NM_001145639, uc011mdu.1_5end |
EntrezGene: | GPSM1 |
HGNC: | 17858 |
UniProt: | Q86YR5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 2.82e-42 | 27 |
cardiac chamber | 2.34e-25 | 3 |
valve | 7.93e-25 | 3 |
cardiac mesenchyme | 7.93e-25 | 3 |
cardial valve | 7.93e-25 | 3 |
tunica intima | 7.93e-25 | 3 |
heart layer | 7.93e-25 | 3 |
endocardium | 7.93e-25 | 3 |
endocardial cushion | 7.93e-25 | 3 |
presumptive endocardium | 7.93e-25 | 3 |
compound organ | 5.58e-21 | 68 |
heart left ventricle | 1.08e-19 | 1 |
cardiac ventricle | 1.08e-19 | 1 |
future cardiac ventricle | 1.08e-19 | 1 |
left cardiac atrium | 1.30e-19 | 1 |
mitral valve | 2.25e-19 | 1 |
pulmonary valve | 3.91e-19 | 1 |
semi-lunar valve | 3.91e-19 | 1 |
heart | 7.05e-19 | 24 |
primitive heart tube | 7.05e-19 | 24 |
primary heart field | 7.05e-19 | 24 |
anterior lateral plate mesoderm | 7.05e-19 | 24 |
heart tube | 7.05e-19 | 24 |
heart primordium | 7.05e-19 | 24 |
cardiac mesoderm | 7.05e-19 | 24 |
cardiogenic plate | 7.05e-19 | 24 |
heart rudiment | 7.05e-19 | 24 |
blood vessel layer | 3.14e-11 | 7 |
cardiac atrium | 1.72e-10 | 2 |
future cardiac atrium | 1.72e-10 | 2 |
atrioventricular valve | 2.27e-10 | 2 |
circulatory system | 6.84e-10 | 112 |
neural crest-derived structure | 3.90e-08 | 10 |
neural crest | 3.90e-08 | 10 |
neural fold | 3.90e-08 | 10 |
adult organism | 1.77e-07 | 114 |
egg chorion | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.27e-37 | 2 |
vascular disease | 1.88e-19 | 1 |
ischemia | 1.88e-19 | 1 |
extrinsic cardiomyopathy | 1.88e-19 | 1 |
myocardial ischemia | 1.88e-19 | 1 |
myocardial infarction | 1.88e-19 | 1 |
cardiovascular system disease | 2.98e-19 | 4 |