FFCP PHASE1:Hg19::chr9:131872928..131873088,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1384 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2342 | |||
|TSSclassifier=strong | |||
|UniProt=P43155,C9JBD1,A6PVN3,F2Z2C5,B7ZBP5 | |||
|association_with_transcript=0bp_to_ENST00000318080,ENST00000351352,ENST00000393384,ENST00000441796,ENST00000455830,ENST00000458362,NM_000755,NR_028048,uc004bxh.2,uc004bxk.3_5end | |||
|description=CAGE_peak_1_at_CRAT_5end | |||
|id=chr9:131872928..131873088,- | |||
|ontology_enrichment_celltype=CL:0000055!1.09e-18!180;CL:0000183!6.35e-11!59;CL:0000057!2.63e-10!75;CL:0000192!3.12e-10!42;CL:0000514!3.12e-10!42;CL:0000222!1.88e-09!119;CL:0000680!4.70e-09!57;CL:0000056!4.70e-09!57;CL:0000355!4.70e-09!57;CL:0000187!6.49e-09!54;CL:0000359!8.97e-09!32;CL:0000393!5.27e-07!60;CL:0000211!5.27e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.20e-08;32!CL:0000192;4.54e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.81e-10,43;CL:0000514,1.81e-10,43;CL:0000057,2.14e-10,76;CL:0000222,7.31e-10,121;CL:0000680,2.79e-09,58;CL:0000056,2.79e-09,58;CL:0000355,2.79e-09,58;CL:0000187,3.85e-09,55;CL:0000359,8.96e-09,32;CL:0000393,3.26e-07,61;CL:0000211,3.26e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;4.54e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.44e-21!365;UBERON:0000481!4.07e-19!347;UBERON:0000119!2.93e-17!312;UBERON:0000483!6.02e-17!309;UBERON:0000468!5.18e-16!659;UBERON:0003914!3.28e-15!118;UBERON:0000477!3.68e-15!286;UBERON:0004111!4.06e-15!241;UBERON:0005256!4.23e-15!143;UBERON:0001009!6.32e-15!113;UBERON:0000025!2.61e-14!194;UBERON:0000467!6.03e-14!625;UBERON:0004535!6.86e-14!110;UBERON:0000480!1.19e-13!626;UBERON:0002100!1.44e-13!216;UBERON:0000914!3.32e-13!83;UBERON:0002329!3.32e-13!83;UBERON:0003077!3.32e-13!83;UBERON:0003059!3.32e-13!83;UBERON:0007282!3.32e-13!83;UBERON:0009618!3.32e-13!83;UBERON:0007285!3.32e-13!83;UBERON:0004290!1.31e-12!70;UBERON:0002049!1.40e-12!79;UBERON:0007798!1.40e-12!79;UBERON:0004872!3.36e-12!84;UBERON:0000486!8.64e-12!82;UBERON:0002050!1.47e-11!605;UBERON:0005423!1.47e-11!605;UBERON:0000923!1.55e-11!604;UBERON:0005291!1.55e-11!604;UBERON:0006598!1.55e-11!604;UBERON:0002532!1.55e-11!604;UBERON:0002385!1.61e-11!63;UBERON:0001015!1.61e-11!63;UBERON:0000383!1.61e-11!63;UBERON:0000490!3.00e-11!138;UBERON:0001981!3.67e-11!60;UBERON:0007500!3.67e-11!60;UBERON:0004537!3.67e-11!60;UBERON:0006965!3.67e-11!60;UBERON:0000055!5.15e-11!69;UBERON:0001134!5.37e-11!61;UBERON:0002036!5.37e-11!61;UBERON:0003082!5.37e-11!61;UBERON:0000922!8.01e-11!612;UBERON:0001637!1.30e-10!42;UBERON:0003509!1.30e-10!42;UBERON:0004572!1.30e-10!42;UBERON:0007023!1.91e-09!115;UBERON:0003104!1.99e-09!238;UBERON:0009142!1.99e-09!238;UBERON:0004573!5.19e-09!33;UBERON:0004571!5.19e-09!33;UBERON:0003103!8.25e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.81e-08;33!UBERON:0004571;3.81e-08;33!UBERON:0001637;1.05e-07;42!UBERON:0003509;1.05e-07;42!UBERON:0004572;1.05e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.39e-17,309;UBERON:0000483,6.94e-17,306;UBERON:0003104,3.46e-15,160;UBERON:0009142,3.46e-15,160;UBERON:0003914,5.66e-15,117;UBERON:0001009,7.91e-15,112;UBERON:0004111,1.29e-14,240;UBERON:0007503,1.96e-14,78;UBERON:0005256,2.39e-14,122;UBERON:0000025,7.85e-14,192;UBERON:0004535,8.58e-14,109;UBERON:0003077,4.74e-13,72;UBERON:0007285,4.74e-13,72;UBERON:0000490,5.10e-13,148;UBERON:0007524,6.27e-13,73;UBERON:0002329,7.52e-13,71;UBERON:0003059,7.52e-13,71;UBERON:0007282,7.52e-13,71;UBERON:0004290,7.52e-13,71;UBERON:0009618,7.52e-13,71;UBERON:0002049,1.71e-12,78;UBERON:0007798,1.71e-12,78;UBERON:0004872,4.02e-12,83;UBERON:0000486,5.07e-12,83;UBERON:0002100,5.18e-12,199;UBERON:0002385,9.35e-12,64;UBERON:0001015,9.35e-12,64;UBERON:0000383,9.35e-12,64;UBERON:0001134,3.13e-11,62;UBERON:0002036,3.13e-11,62;UBERON:0003082,3.13e-11,62;UBERON:0007500,4.38e-11,59;UBERON:0001981,4.38e-11,59;UBERON:0004537,4.38e-11,59;UBERON:0006965,4.38e-11,59;UBERON:0000055,6.24e-11,68;UBERON:0001637,1.30e-10,42;UBERON:0003509,1.30e-10,42;UBERON:0004572,1.30e-10,42;UBERON:0005423,1.56e-09,581;UBERON:0007023,1.87e-09,114;UBERON:0000923,1.99e-09,560;UBERON:0010316,1.99e-09,560;UBERON:0005291,1.99e-09,560;UBERON:0006598,1.99e-09,560;UBERON:0010317,1.99e-09,560;UBERON:0002532,1.99e-09,560;UBERON:0010314,3.47e-09,132;UBERON:0002050,3.62e-09,564;UBERON:0004573,5.19e-09,33;UBERON:0004571,5.19e-09,33;UBERON:0000922,6.00e-09,592 | |||
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| |||
|short_description=p1@CRAT | |||
}} |
Revision as of 03:37, 23 January 2014
Short description: | p1@CRAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CRAT_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000318080, ENST00000351352, ENST00000393384, ENST00000441796, ENST00000455830, ENST00000458362, NM_000755, NR_028048, uc004bxh.2, uc004bxk.3_5end |
EntrezGene: | CRAT |
HGNC: | 2342 |
UniProt: | P43155C9JBD1A6PVN3F2Z2C5B7ZBP5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.81e-10 | 43 |
smooth muscle myoblast | 1.81e-10 | 43 |
fibroblast | 2.14e-10 | 76 |
mesodermal cell | 7.31e-10 | 121 |
muscle precursor cell | 2.79e-09 | 58 |
myoblast | 2.79e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.79e-09 | 58 |
muscle cell | 3.85e-09 | 55 |
vascular associated smooth muscle cell | 8.96e-09 | 32 |
electrically responsive cell | 3.26e-07 | 61 |
electrically active cell | 3.26e-07 | 61 |