FFCP PHASE1:Mm9::chr4:42963241..42963317,+: Difference between revisions
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{{FFCP|EntrezGene=56323|HGNC=|MCL_coexpression_id=2|UniProt=O89114|association_with_transcript=0bp_to_ENSMUST00000084662,ENSMUST00000153807,uc008son.1_5end|description=CAGE_peak_2_at_Dnajb5_5end|id=chr4:42963241..42963317,+|ontology_enrichment_celltype=CL:0000540!1.66e-09!33;CL:0000047!1.66e-09!33;CL:0000031!1.66e-09!33;CL:0000404!1.66e-09!33;CL:0002319!1.71e-08!43;CL:0000221!7.17e-08!44;CL:0000133!7.17e-08!44;CL:0000393!3.51e-07!39;CL:0000211!3.51e-07!39;CL:0000117!5.12e-07!23;CL:0000337!5.12e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.36e-10,33;CL:0000047,2.36e-10,33;CL:0000031,2.36e-10,33;CL:0000404,2.36e-10,33;CL:0002319,8.89e-09,43;CL:0000221,2.74e-08,44;CL:0000133,2.74e-08,44;CL:0000117,7.99e-08,23;CL:0000337,7.99e-08,23;CL:0000393,2.09e-07,39;CL:0000211,2.09e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.92e-18!73;UBERON:0005743!5.92e-18!73;UBERON:0000073!4.04e-17!75;UBERON:0001016!4.04e-17!75;UBERON:0002791!6.78e-15!29;UBERON:0003528!6.78e-15!29;UBERON:0001893!6.78e-15!29;UBERON:0002020!1.03e-14!34;UBERON:0000955!1.03e-13!50;UBERON:0006238!1.03e-13!50;UBERON:0003080!2.10e-13!40;UBERON:0002780!2.69e-13!39;UBERON:0001890!2.69e-13!39;UBERON:0006240!2.69e-13!39;UBERON:0002616!4.32e-13!49;UBERON:0000956!1.24e-12!21;UBERON:0001869!1.24e-12!21;UBERON:0000203!1.24e-12!21;UBERON:0004121!1.40e-12!102;UBERON:0000924!1.40e-12!102;UBERON:0006601!1.40e-12!102;UBERON:0001049!3.24e-12!52;UBERON:0005068!3.24e-12!52;UBERON:0006241!3.24e-12!52;UBERON:0007135!3.24e-12!52;UBERON:0003056!5.37e-12!49;UBERON:0000033!3.62e-11!63;UBERON:0002619!1.25e-10!17;UBERON:0002346!1.66e-10!71;UBERON:0003075!1.66e-10!71;UBERON:0007284!1.66e-10!71;UBERON:0002021!2.83e-08!10;UBERON:0000411!2.83e-08!10;UBERON:0001950!2.83e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0003528,7.43e-17,29;UBERON:0002791,7.43e-17,29;UBERON:0001893,7.43e-17,29;UBERON:0002020,1.20e-16,34;UBERON:0001017,1.27e-16,73;UBERON:0001016,1.61e-15,75;UBERON:0000956,2.93e-14,21;UBERON:0001869,2.93e-14,21;UBERON:0000203,2.93e-14,21;UBERON:0003080,1.66e-13,40;UBERON:0002780,2.25e-13,39;UBERON:0001890,2.25e-13,39;UBERON:0006240,2.25e-13,39;UBERON:0000073,1.11e-12,54;UBERON:0004121,3.80e-12,95;UBERON:0000924,3.80e-12,95;UBERON:0006601,3.80e-12,95;UBERON:0002619,5.80e-12,17;UBERON:0000955,8.15e-12,47;UBERON:0006238,8.15e-12,47;UBERON:0003056,1.67e-11,49;UBERON:0002616,3.65e-11,46;UBERON:0001049,4.52e-11,52;UBERON:0005068,4.52e-11,52;UBERON:0006241,4.52e-11,52;UBERON:0007135,4.52e-11,52;UBERON:0002346,1.48e-10,64;UBERON:0003075,1.48e-10,64;UBERON:0007284,1.48e-10,64;UBERON:0010314,2.17e-10,92;UBERON:0002021,2.91e-09,10;UBERON:0000411,2.91e-09,10;UBERON:0001950,2.91e-09,10;UBERON:0010371,9.78e-09,73|phase1_expression=0.480446541314382,0,0,0,0,0.33575854382378,0.233612640595526,0.129123323441576,1.12630977721333,3.97909694747389,2.39705155515707,1.7549874978974,0,0.437102012094987,0,0,0,0,0,0,7.39876624314307,0,0,0,0,0,0,0,0,0,0.443461021310609,1.90509202037889,0,0,0,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.503587271902309,0.405507724878058,1.10128051297009,0,3.70642765846759,3.51497892375155,1.94429899074283,0.979904951377538,1.43752564364972,0.167782606057736,0,0,0,0,0.515672092277442,6.06949382578793,2.64495489636016,6.33831403506179,6.77689064138264,3.55717918444456,0,0,0,3.89480143673926,1.92109152660777,7.15458324928496,5.8052553482627,6.52007380189284,1.42825492201902,1.10434270475807,6.73699395682247,7.76348315247715,5.51531271966013,3.30347642998166,6.2566795661742,5.68344173048101,6.85808696197008,6.58711033937349,8.85552729946492,1.3959149950069,1.12552522006336,2.44477196442896,2.06240009831567,2.98980529678116,4.28718725398191,0.075726193333184,0.453429360640713,2.02905142091174,0,0.679971333707751,0.539703191637817,0,0,3.65155492342555,0,0,0,0,0,0,0,0,0,0.505524445014783,1.48439043634778,0,0.29688427812965,0.173485326766136,0.913396434936424,0.922461989024234,0.753613202763113,1.41106448562846,0,0,7.80836527367523,0.884610551949874,2.42650274921114,3.75430581382669,4.363877278217,9.31958806090611,0.878342391034642,1.8850203613211,1.02182822083437,0,0,0.127070227073065,2.69623150928681,21.9600289352941,15.0785222535437,38.2413504423008,27.3615539343454,6.85700547046548,8.76102820565891,0.305518091550949,0.746441823660558,0,0.841767423545896,0,0.919608417733892,1.98068342785884,2.10986744970001,1.08858398642125,1.0249097622788,2.15513966487376,1.55222022443409,0,0.567318240503458,1.40760899331159,0.219195732427575,1.39023624612799,6.268538997399,3.90986059175093,0.199034266818493,0,0,0,1.65700618028402,3.51789089971644,2.70093092191522,2.60419209143731,3.93528463494808,3.08534225774756,7.44108623201305,11.8040296615832,5.7215017759913,4.77223564749093,6.56669856316381,3.40489000092594,5.11699955988663,4.61055242111206,1.34206418760372,23.3421842906181,14.097931895962,0.330418782983798,1.58670339998127,0,0,0.128867461322093,2.21851877085677,1.11189021922435,1.14135375667535,2.3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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56323 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O89114 | |||
|association_with_transcript=0bp_to_ENSMUST00000084662,ENSMUST00000153807,uc008son.1_5end | |||
|cluster_id=chr4:42963241..42963317,+ | |||
|description=CAGE_peak_2_at_Dnajb5_5end | |||
|id=chr4:42963241..42963317,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.66e-09!33;CL:0000047!1.66e-09!33;CL:0000031!1.66e-09!33;CL:0000404!1.66e-09!33;CL:0002319!1.71e-08!43;CL:0000221!7.17e-08!44;CL:0000133!7.17e-08!44;CL:0000393!3.51e-07!39;CL:0000211!3.51e-07!39;CL:0000117!5.12e-07!23;CL:0000337!5.12e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.36e-10,33;CL:0000047,2.36e-10,33;CL:0000031,2.36e-10,33;CL:0000404,2.36e-10,33;CL:0002319,8.89e-09,43;CL:0000221,2.74e-08,44;CL:0000133,2.74e-08,44;CL:0000117,7.99e-08,23;CL:0000337,7.99e-08,23;CL:0000393,2.09e-07,39;CL:0000211,2.09e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.92e-18!73;UBERON:0005743!5.92e-18!73;UBERON:0000073!4.04e-17!75;UBERON:0001016!4.04e-17!75;UBERON:0002791!6.78e-15!29;UBERON:0003528!6.78e-15!29;UBERON:0001893!6.78e-15!29;UBERON:0002020!1.03e-14!34;UBERON:0000955!1.03e-13!50;UBERON:0006238!1.03e-13!50;UBERON:0003080!2.10e-13!40;UBERON:0002780!2.69e-13!39;UBERON:0001890!2.69e-13!39;UBERON:0006240!2.69e-13!39;UBERON:0002616!4.32e-13!49;UBERON:0000956!1.24e-12!21;UBERON:0001869!1.24e-12!21;UBERON:0000203!1.24e-12!21;UBERON:0004121!1.40e-12!102;UBERON:0000924!1.40e-12!102;UBERON:0006601!1.40e-12!102;UBERON:0001049!3.24e-12!52;UBERON:0005068!3.24e-12!52;UBERON:0006241!3.24e-12!52;UBERON:0007135!3.24e-12!52;UBERON:0003056!5.37e-12!49;UBERON:0000033!3.62e-11!63;UBERON:0002619!1.25e-10!17;UBERON:0002346!1.66e-10!71;UBERON:0003075!1.66e-10!71;UBERON:0007284!1.66e-10!71;UBERON:0002021!2.83e-08!10;UBERON:0000411!2.83e-08!10;UBERON:0001950!2.83e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,7.43e-17,29;UBERON:0002791,7.43e-17,29;UBERON:0001893,7.43e-17,29;UBERON:0002020,1.20e-16,34;UBERON:0001017,1.27e-16,73;UBERON:0001016,1.61e-15,75;UBERON:0000956,2.93e-14,21;UBERON:0001869,2.93e-14,21;UBERON:0000203,2.93e-14,21;UBERON:0003080,1.66e-13,40;UBERON:0002780,2.25e-13,39;UBERON:0001890,2.25e-13,39;UBERON:0006240,2.25e-13,39;UBERON:0000073,1.11e-12,54;UBERON:0004121,3.80e-12,95;UBERON:0000924,3.80e-12,95;UBERON:0006601,3.80e-12,95;UBERON:0002619,5.80e-12,17;UBERON:0000955,8.15e-12,47;UBERON:0006238,8.15e-12,47;UBERON:0003056,1.67e-11,49;UBERON:0002616,3.65e-11,46;UBERON:0001049,4.52e-11,52;UBERON:0005068,4.52e-11,52;UBERON:0006241,4.52e-11,52;UBERON:0007135,4.52e-11,52;UBERON:0002346,1.48e-10,64;UBERON:0003075,1.48e-10,64;UBERON:0007284,1.48e-10,64;UBERON:0010314,2.17e-10,92;UBERON:0002021,2.91e-09,10;UBERON:0000411,2.91e-09,10;UBERON:0001950,2.91e-09,10;UBERON:0010371,9.78e-09,73 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.33575854382378,0.233612640595526,0.129123323441576,1.12630977721333,3.97909694747389,2.39705155515707,1.7549874978974,0,0.437102012094987,0,0,0,0,0,0,7.39876624314307,0,0,0,0,0,0,0,0,0,0.443461021310609,1.90509202037889,0,0,0,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0.503587271902309,0.405507724878058,1.10128051297009,0,3.70642765846759,3.51497892375155,1.94429899074283,0.979904951377538,1.43752564364972,0.167782606057736,0,0,0,0,0.515672092277442,6.06949382578793,2.64495489636016,6.33831403506179,6.77689064138264,3.55717918444456,0,0,0,3.89480143673926,1.92109152660777,7.15458324928496,5.8052553482627,6.52007380189284,1.42825492201902,1.10434270475807,6.73699395682247,7.76348315247715,5.51531271966013,3.30347642998166,6.2566795661742,5.68344173048101,6.85808696197008,6.58711033937349,8.85552729946492,1.3959149950069,1.12552522006336,2.44477196442896,2.06240009831567,2.98980529678116,4.28718725398191,0.075726193333184,0.453429360640713,2.02905142091174,0,0.679971333707751,0.539703191637817,0,0,3.65155492342555,0,0,0,0,0,0,0,0,0,0.505524445014783,1.48439043634778,0,0.29688427812965,0.173485326766136,0.913396434936424,0.922461989024234,0.753613202763113,1.41106448562846,0,0,7.80836527367523,0.884610551949874,2.42650274921114,3.75430581382669,4.363877278217,9.31958806090611,0.878342391034642,1.8850203613211,1.02182822083437,0,0,0.127070227073065,2.69623150928681,21.9600289352941,15.0785222535437,38.2413504423008,27.3615539343454,6.85700547046548,8.76102820565891,0.305518091550949,0.746441823660558,0,0.841767423545896,0,0.919608417733892,1.98068342785884,2.10986744970001,1.08858398642125,1.0249097622788,2.15513966487376,1.55222022443409,0,0.567318240503458,1.40760899331159,0.219195732427575,1.39023624612799,6.268538997399,3.90986059175093,0.199034266818493,0,0,0,1.65700618028402,3.51789089971644,2.70093092191522,2.60419209143731,3.93528463494808,3.08534225774756,7.44108623201305,11.8040296615832,5.7215017759913,4.77223564749093,6.56669856316381,3.40489000092594,5.11699955988663,4.61055242111206,1.34206418760372,23.3421842906181,14.097931895962,0.330418782983798,1.58670339998127,0,0,0.128867461322093,2.21851877085677,1.11189021922435,1.14135375667535,2.37264530772256,1.81168850196412,1.50801125280162,0.198956472041151,1.55971269695296,1.79763881730844,3.45820879799511,0.796565093017469,0.569003702859245,0.456994050438915,0,0.203651327845314,0.193952487167626,0.210407459670956,0.189709611372772,0.147610147979602,0,0.246794327843601,0,0.166845105716094,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0,2.03228509183265,0,0,0.339490171550376,0.469380496577004,0.670025029767263,0.476087281772027,0.975668239288994,0.630540576424764,0.221464689648775,1.2756381492599,1.3109065177259,1.03610989119537,0.144649058581512,0,0,0.491764273019036,0,0.963303539926752,0.820481806145422,0,2.7771801992481,4.73262329124385,4.29482618726302,2.58508077279359,3.82350076724083,6.68396022247182,2.83076530788832,6.8817819284732,8.18316402151673,7.11518000303742,44.3423416662094,1.84522110770749,0.178065603667255,0.162886959353576,6.43383479592888,0,0,0.302323556964751,0,0,0,0.516856586336442,0,0.712994756769443,0.948110273807448,0,0,5.7874732978144,0.720244376125241,0.517434735131018,0,0.354680467284547,0.356737635204141,0.822745103010605,3.65357938937519,0.469343416127421,0,0.661585194164886,1.15420377059036,1.93757312035087,2.47282992205439,1.07435109602823,0.656563598980245,1.1659233465194,0.556275906031529,0,0,0.185194527369712,0.188368457004691,0.136694227721025,0.228778173206523,0.169978429993855,0.139951452323658,0.138199973804424,3.81868247206045,0.158167996790568,1.21991680276109,1.40406943068342,2.92723614420256,4.14888871117737,5.12484516262319,7.27350410382956,12.3025292732494,6.35113369129785,0,0.56369293868419,0,0,0.194451188344048,0,0,0,0,0,0,0.864090018773596,0,0,0.205421914329655,0.129920822977795,0.537080087002444,0.198681354781265,0.240390899039938,0,0.302899349844443,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0.116876902181569,2.26730383615211,0.221985953374065,2.42227412845584,0.839423081820392,18.3530114330581,5.63047426353546,3.29672923681077,1.2862102744744,2.50786052017682,44.6153955667483,40.0482955761244,60.726924424576,56.1959906263858,35.6242910280734,21.1510291269116,43.8764625150674,51.3366171675611,87.9096273429357,62.1312374102184,0.415149390336707,1.19707462020309,1.53660245178721,3.40349403895612,1.46729213839588,2.38996560985018,5.55616819504038,5.15087643097235,5.77654577265267,4.29585259998456,5.32306529769503,5.84741658296836,5.24392441831341,6.40251524048693,5.57124048869449,1.90517476513229,5.44656331940821,6.75182271622968,5.35711671044299,7.21274708658547,7.20025430009372,4.96932257246145,4.76872379894642,4.50573891560218,5.74067220533517,5.24610568928394,5.85369513192872,4.99832451731901,5.56796866768033,5.61142271657738,6.64356101495375,5.71325997778268,5.32000356120596,5.88759996506671,6.173011551396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| |||
|short_description=p2@Dnajb5 | |||
}} |
Revision as of 11:22, 5 August 2015
Short description: | p2@Dnajb5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dnajb5_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000084662, ENSMUST00000153807, uc008son.1_5end |
EntrezGene: | 56323 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.36e-10 | 33 |
neuronal stem cell | 2.36e-10 | 33 |
neuroblast | 2.36e-10 | 33 |
electrically signaling cell | 2.36e-10 | 33 |
neural cell | 8.89e-09 | 43 |
ectodermal cell | 2.74e-08 | 44 |
neurectodermal cell | 2.74e-08 | 44 |
CNS neuron (sensu Vertebrata) | 7.99e-08 | 23 |
neuroblast (sensu Vertebrata) | 7.99e-08 | 23 |
electrically responsive cell | 2.09e-07 | 39 |
electrically active cell | 2.09e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 7.43e-17 | 29 |
regional part of telencephalon | 7.43e-17 | 29 |
telencephalon | 7.43e-17 | 29 |
gray matter | 1.20e-16 | 34 |
central nervous system | 1.27e-16 | 73 |
nervous system | 1.61e-15 | 75 |
cerebral cortex | 2.93e-14 | 21 |
cerebral hemisphere | 2.93e-14 | 21 |
pallium | 2.93e-14 | 21 |
anterior neural tube | 1.66e-13 | 40 |
regional part of forebrain | 2.25e-13 | 39 |
forebrain | 2.25e-13 | 39 |
future forebrain | 2.25e-13 | 39 |
regional part of nervous system | 1.11e-12 | 54 |
ectoderm-derived structure | 3.80e-12 | 95 |
ectoderm | 3.80e-12 | 95 |
presumptive ectoderm | 3.80e-12 | 95 |
regional part of cerebral cortex | 5.80e-12 | 17 |
brain | 8.15e-12 | 47 |
future brain | 8.15e-12 | 47 |
pre-chordal neural plate | 1.67e-11 | 49 |
regional part of brain | 3.65e-11 | 46 |
neural tube | 4.52e-11 | 52 |
neural rod | 4.52e-11 | 52 |
future spinal cord | 4.52e-11 | 52 |
neural keel | 4.52e-11 | 52 |
neurectoderm | 1.48e-10 | 64 |
neural plate | 1.48e-10 | 64 |
presumptive neural plate | 1.48e-10 | 64 |
structure with developmental contribution from neural crest | 2.17e-10 | 92 |
occipital lobe | 2.91e-09 | 10 |
visual cortex | 2.91e-09 | 10 |
neocortex | 2.91e-09 | 10 |
ecto-epithelium | 9.78e-09 | 73 |