FFCP PHASE1:Mm9::chr4:108551697..108551721,+: Difference between revisions
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{{FFCP|EntrezGene=69908|HGNC=|MCL_coexpression_id=3447|UniProt=Q0PD62,Q9CZT8|association_with_transcript=22bp_to_NM_023537,uc008ubu.1_5end|description=CAGE_peak_1_at_Rab3b_5end|id=chr4:108551697..108551721,+|ontology_enrichment_celltype=CL:0000117!9.88e-10!23;CL:0000337!9.88e-10!23;CL:0000540!2.66e-08!33;CL:0000047!2.66e-08!33;CL:0000031!2.66e-08!33;CL:0000404!2.66e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,7.55e-10,23;CL:0000337,7.55e-10,23;CL:0000540,2.13e-08,33;CL:0000047,2.13e-08,33;CL:0000031,2.13e-08,33;CL:0000404,2.13e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.87e-27!71;UBERON:0003075!2.87e-27!71;UBERON:0007284!2.87e-27!71;UBERON:0004121!4.16e-24!102;UBERON:0000924!4.16e-24!102;UBERON:0006601!4.16e-24!102;UBERON:0001017!2.40e-23!73;UBERON:0005743!2.40e-23!73;UBERON:0000073!1.55e-22!75;UBERON:0001016!1.55e-22!75;UBERON:0001049!2.23e-22!52;UBERON:0005068!2.23e-22!52;UBERON:0006241!2.23e-22!52;UBERON:0007135!2.23e-22!52;UBERON:0000033!2.34e-21!63;UBERON:0000955!1.82e-20!50;UBERON:0006238!1.82e-20!50;UBERON:0003056!2.05e-20!49;UBERON:0002616!9.96e-20!49;UBERON:0003080!1.40e-18!40;UBERON:0002780!4.17e-18!39;UBERON:0001890!4.17e-18!39;UBERON:0006240!4.17e-18!39;UBERON:0002020!7.14e-15!34;UBERON:0002791!4.43e-12!29;UBERON:0003528!4.43e-12!29;UBERON:0001893!4.43e-12!29;UBERON:0000468!7.10e-10!333;UBERON:0000956!2.66e-08!21;UBERON:0001869!2.66e-08!21;UBERON:0000203!2.66e-08!21;UBERON:0002021!7.74e-08!10;UBERON:0000411!7.74e-08!10;UBERON:0001950!7.74e-08!10;UBERON:0007811!8.69e-08!86;UBERON:0002619!1.45e-07!17;UBERON:0000153!1.60e-07!94;UBERON:0000922!2.97e-07!328;UBERON:0001894!3.11e-07!10;UBERON:0006222!3.11e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.86e-23,73;UBERON:0002346,1.87e-23,64;UBERON:0003075,1.87e-23,64;UBERON:0007284,1.87e-23,64;UBERON:0000073,7.66e-23,54;UBERON:0001049,1.90e-22,52;UBERON:0005068,1.90e-22,52;UBERON:0006241,1.90e-22,52;UBERON:0007135,1.90e-22,52;UBERON:0001016,2.15e-22,75;UBERON:0010371,1.29e-20,73;UBERON:0003056,2.37e-20,49;UBERON:0004121,7.54e-20,95;UBERON:0000924,7.54e-20,95;UBERON:0006601,7.54e-20,95;UBERON:0000955,1.47e-19,47;UBERON:0006238,1.47e-19,47;UBERON:0002616,8.09e-19,46;UBERON:0003080,1.77e-18,40;UBERON:0010314,2.13e-18,92;UBERON:0002780,5.34e-18,39;UBERON:0001890,5.34e-18,39;UBERON:0006240,5.34e-18,39;UBERON:0002020,9.82e-15,34;UBERON:0003528,6.46e-12,29;UBERON:0002791,6.46e-12,29;UBERON:0001893,6.46e-12,29;UBERON:0000956,4.19e-08,21;UBERON:0001869,4.19e-08,21;UBERON:0000203,4.19e-08,21;UBERON:0002021,6.29e-08,10;UBERON:0000411,6.29e-08,10;UBERON:0001950,6.29e-08,10;UBERON:0002619,2.41e-07,17;UBERON:0001894,2.58e-07,10;UBERON:0006222,2.58e-07,10|phase1_expression=26.424559772291,0,0,0,0,4.36486106970913,4.67225281191051,0,0,0,0,0,0,0,0.333109761815663,0.404950534779652,0,0,0.548457734422955,0,12.7564935226605,0.0992909512008853,0,1.75991665072747,1.14704640533585,0.57423196411502,2.58457197695445,2.37018355954478,2.28028103347649,1.00812051903972,1.55211357458713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50298109883741,0.659058548203415,0.388859798148567,5.45947044338914,1.43752564364972,0.838913030288682,0,0,0,0,0,29.5382032855013,43.9062512795787,32.9592329823213,1.0165335962074,1.77858959222228,5.39939830368839,2.96659908770092,9.9467216092454,9.58720353658895,6.53171119046643,8.29516898467821,11.8805225731888,9.46462326081219,64.8427734596634,69.3527218588066,16.4137670948038,14.0892842396807,19.3035945188104,13.2139057199266,12.3856717942632,22.4265538554115,30.0700736024842,38.3333226694096,25.5247551572812,29.8725808931478,46.7092966326294,35.7547899797736,61.8720029494702,70.1892386339577,49.7686520353553,0.984440513331393,5.59229544790213,13.6236309689789,11.185510400758,0,0,0,0,7.02222100658759,0,0,0,12.5350643601246,0,0,0,1.29894624606728,1.26679932737549,1.51657333504435,2.62622923353838,0.517875767294343,43.4935467459937,31.5743294714367,53.890389661249,44.9700219649314,56.2195449261282,42.6847006902608,18.975655290781,0.741584903203122,1.01219549843938,0,1.45590164952668,0.662524555381181,0,5.59175283654366,12.8823550685081,10.6817820474862,3.0654846625031,0,0,0,31.0066623567983,84.1801109186273,60.0627803099492,104.989889396135,93.0804264682403,62.336413367868,75.7666698526428,3.36069900706044,0.497627882440372,6.31806896084187,3.99839526184301,14.053007839972,12.4147136394075,20.7071449276152,18.536692593793,18.0977087742532,18.7046031615881,17.9907311154679,5.69147415625834,6.46703978798527,6.80781888604149,8.2697028357056,6.57587197282724,5.83899223373756,2.43776516565517,5.55611768301447,10.3497818745616,0,0,0,4.55676699578104,3.51789089971644,3.6012412292203,1.89395788468168,0.393528463494808,2.62254091908543,2.09280550275367,1.60964040839772,1.16765342367169,1.31647879930784,1.31333971263276,1.62137619091711,2.63159977365598,3.29325172936576,4.16039898157152,74.442641791701,43.1170325869202,0,1.32225283331772,5.97207101498655,6.73486348395272,3.994891300984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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69908 | |||
|HGNC= | |||
|MCL_coexpression_id=3447 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q0PD62,uniprot:Q9CZT8 | |||
|association_with_transcript=22bp_to_NM_023537,uc008ubu.1_5end | |||
|cluster_id=chr4:108551697..108551721,+ | |||
|description=CAGE_peak_1_at_Rab3b_5end | |||
|id=chr4:108551697..108551721,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.88e-10!23;CL:0000337!9.88e-10!23;CL:0000540!2.66e-08!33;CL:0000047!2.66e-08!33;CL:0000031!2.66e-08!33;CL:0000404!2.66e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.55e-10,23;CL:0000337,7.55e-10,23;CL:0000540,2.13e-08,33;CL:0000047,2.13e-08,33;CL:0000031,2.13e-08,33;CL:0000404,2.13e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.87e-27!71;UBERON:0003075!2.87e-27!71;UBERON:0007284!2.87e-27!71;UBERON:0004121!4.16e-24!102;UBERON:0000924!4.16e-24!102;UBERON:0006601!4.16e-24!102;UBERON:0001017!2.40e-23!73;UBERON:0005743!2.40e-23!73;UBERON:0000073!1.55e-22!75;UBERON:0001016!1.55e-22!75;UBERON:0001049!2.23e-22!52;UBERON:0005068!2.23e-22!52;UBERON:0006241!2.23e-22!52;UBERON:0007135!2.23e-22!52;UBERON:0000033!2.34e-21!63;UBERON:0000955!1.82e-20!50;UBERON:0006238!1.82e-20!50;UBERON:0003056!2.05e-20!49;UBERON:0002616!9.96e-20!49;UBERON:0003080!1.40e-18!40;UBERON:0002780!4.17e-18!39;UBERON:0001890!4.17e-18!39;UBERON:0006240!4.17e-18!39;UBERON:0002020!7.14e-15!34;UBERON:0002791!4.43e-12!29;UBERON:0003528!4.43e-12!29;UBERON:0001893!4.43e-12!29;UBERON:0000468!7.10e-10!333;UBERON:0000956!2.66e-08!21;UBERON:0001869!2.66e-08!21;UBERON:0000203!2.66e-08!21;UBERON:0002021!7.74e-08!10;UBERON:0000411!7.74e-08!10;UBERON:0001950!7.74e-08!10;UBERON:0007811!8.69e-08!86;UBERON:0002619!1.45e-07!17;UBERON:0000153!1.60e-07!94;UBERON:0000922!2.97e-07!328;UBERON:0001894!3.11e-07!10;UBERON:0006222!3.11e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.86e-23,73;UBERON:0002346,1.87e-23,64;UBERON:0003075,1.87e-23,64;UBERON:0007284,1.87e-23,64;UBERON:0000073,7.66e-23,54;UBERON:0001049,1.90e-22,52;UBERON:0005068,1.90e-22,52;UBERON:0006241,1.90e-22,52;UBERON:0007135,1.90e-22,52;UBERON:0001016,2.15e-22,75;UBERON:0010371,1.29e-20,73;UBERON:0003056,2.37e-20,49;UBERON:0004121,7.54e-20,95;UBERON:0000924,7.54e-20,95;UBERON:0006601,7.54e-20,95;UBERON:0000955,1.47e-19,47;UBERON:0006238,1.47e-19,47;UBERON:0002616,8.09e-19,46;UBERON:0003080,1.77e-18,40;UBERON:0010314,2.13e-18,92;UBERON:0002780,5.34e-18,39;UBERON:0001890,5.34e-18,39;UBERON:0006240,5.34e-18,39;UBERON:0002020,9.82e-15,34;UBERON:0003528,6.46e-12,29;UBERON:0002791,6.46e-12,29;UBERON:0001893,6.46e-12,29;UBERON:0000956,4.19e-08,21;UBERON:0001869,4.19e-08,21;UBERON:0000203,4.19e-08,21;UBERON:0002021,6.29e-08,10;UBERON:0000411,6.29e-08,10;UBERON:0001950,6.29e-08,10;UBERON:0002619,2.41e-07,17;UBERON:0001894,2.58e-07,10;UBERON:0006222,2.58e-07,10 | |||
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| |||
|short_description=p1@Rab3b | |||
}} |
Revision as of 12:53, 4 August 2015
Short description: | p1@Rab3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab3b_5end |
Coexpression cluster: | MCL_coexpression_mm9:3447 |
Association with transcript: | 22bp_to_NM_023537, uc008ubu.1_5end |
EntrezGene: | 69908 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.55e-10 | 23 |
neuroblast (sensu Vertebrata) | 7.55e-10 | 23 |
neuron | 2.13e-08 | 33 |
neuronal stem cell | 2.13e-08 | 33 |
neuroblast | 2.13e-08 | 33 |
electrically signaling cell | 2.13e-08 | 33 |