FFCP PHASE1:Hg19::chr8:120428643..120428661,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4856 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7885 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-28bp_to_ENST00000520082_5end | |||
|coexpression_cluster_id=C4722 | |||
|description=CAGE_peak_3_at_NOV_5end | |||
|id=chr8:120428643..120428661,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.51e-10;14!CL:0000149;5.21e-08;4!CL:0000148;2.22e-07;10!CL:0000775;2.92e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.37e-10,14;CL:0000149,4.48e-08,4;CL:0000775,2.08e-07,3;CL:0000148,2.26e-07,10;CL:0000541,2.26e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.77e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-21!115;UBERON:0005743!3.59e-14!86;UBERON:0000073!1.65e-12!94;UBERON:0001016!1.65e-12!94;UBERON:0001017!2.19e-12!82;UBERON:0003075!1.03e-10!86;UBERON:0007284!1.03e-10!86;UBERON:0001893!2.67e-10!34;UBERON:0001869!4.59e-10!32;UBERON:0002619!7.51e-10!22;UBERON:0002346!8.10e-10!90;UBERON:0002791!1.00e-09!33;UBERON:0002020!1.21e-09!34;UBERON:0003528!1.21e-09!34;UBERON:0002780!2.05e-09!41;UBERON:0001890!2.05e-09!41;UBERON:0006240!2.05e-09!41;UBERON:0000955!2.23e-09!69;UBERON:0006238!2.23e-09!69;UBERON:0003056!2.65e-09!61;UBERON:0001049!2.70e-09!57;UBERON:0005068!2.70e-09!57;UBERON:0006241!2.70e-09!57;UBERON:0007135!2.70e-09!57;UBERON:0000956!3.25e-09!25;UBERON:0000203!3.25e-09!25;UBERON:0001950!4.37e-09!20;UBERON:0003080!6.43e-09!42;UBERON:0000033!1.62e-08!123;UBERON:0000153!2.36e-08!129;UBERON:0007811!2.36e-08!129;UBERON:0000062!2.79e-08!511;UBERON:0001737!2.81e-08!9;UBERON:0004121!4.58e-08!169;UBERON:0002616!9.77e-08!59;UBERON:0000924!1.34e-07!173;UBERON:0006601!1.34e-07!173;UBERON:0000064!3.38e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.34e-17;9!UBERON:0001557;6.34e-17;9!UBERON:0002619;1.48e-12;22!UBERON:0001950;6.14e-12;20!UBERON:0000956;1.09e-10;25!UBERON:0000203;1.09e-10;25!UBERON:0001869;1.19e-10;32!UBERON:0001893;3.45e-10;34!UBERON:0002791;2.04e-09;32!UBERON:0003528;2.40e-09;34!UBERON:0002020;2.40e-09;34!UBERON:0000200;5.45e-08;6!UBERON:0002780;1.77e-07;41!UBERON:0001890;1.77e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.43e-17,9;UBERON:0002619,8.02e-13,22;UBERON:0001869,2.88e-12,32;UBERON:0001950,3.21e-12,20;UBERON:0003056,7.87e-12,61;UBERON:0002780,2.39e-11,41;UBERON:0001890,2.39e-11,41;UBERON:0003080,2.39e-11,41;UBERON:0006240,2.39e-11,41;UBERON:0001893,2.66e-11,34;UBERON:0000956,6.45e-11,25;UBERON:0000203,6.45e-11,25;UBERON:0002791,1.08e-10,32;UBERON:0003528,7.69e-10,34;UBERON:0002020,7.69e-10,34;UBERON:0003075,8.37e-10,82;UBERON:0007284,8.37e-10,82;UBERON:0001017,4.98e-09,81;UBERON:0002346,5.06e-09,86;UBERON:0007023,1.44e-08,114;UBERON:0010371,2.16e-08,104;UBERON:0001016,3.25e-08,89;UBERON:0001049,5.47e-08,56;UBERON:0005068,5.47e-08,56;UBERON:0006241,5.47e-08,56;UBERON:0007135,5.47e-08,56;UBERON:0000200,9.83e-08,6;UBERON:0000073,1.01e-07,53;UBERON:0002616,1.01e-07,53;UBERON:0001781,1.02e-07,4;UBERON:0000955,4.29e-07,68;UBERON:0006238,4.29e-07,68;UBERON:0001557,4.30e-07,19 | |||
|phase1_expression=0.363356758541113,0,0,1.0007329835313,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.376627918784408,0.61130724598361,0.57470412614962,0.393553906568396,0,0,0,0,0,0,0,0,0.587200878669695,0,0.200544447470142,0,0.447830948479849,0.32389366601898,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0.199463657621632,0,0.290209238628584,0,1.24564449799115,0.251248665256743,0,0.434377689410233,0,0.368277635987565,0.632924774881769,0,0,0.209658645508376,0,0.300353785683013,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473554504088034,0,0,0,0,0,0.670700859703636,0.12786256184353,0,1.00267582127178,0.579386075843295,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,1.22031028774085,0,0,0,0,0,0,0,0,3.9534125230819,0,0,0,0.25326102332916,0.264818361626438,1.14734648299525,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0.140450806702248,0.61246251376468,0.982674538494144,0.206651562351531,0,0.247266929278557,0,0,0.336672227908132,0.500474079487857,0,0,0.30648779579902,0.300476117813194,0.226864366320042,0,0,0,0,0,0.515281080091258,0.558350568994769,1.5189869901714,0.194874010322397,0.252433774244115,0,0.323292113637624,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,3.19428360107579,2.86593973132773,1.68707720918437,2.86764329104224,2.61455332910887,3.32178866755535,2.96628877952362,3.72820783738158,2.30848294167834,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,0,0,0,0,0.651616610620649,0,0,1.04337364477569,0.117408694235822,0,0,0.190254152234598,0,0,0.492434012174795,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,2.07328115540772,2.88239906833923,2.5248486685276,6.54028311209341,7.25778008560728,4.68869788840188,0,4.31875469353959,2.40274446275134,8.00314011365619,0,0,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,1.52456774533478,2.60279707715243,0.773288812777695,2.34522771468088,0.637938751653163,8.98808428736619,2.99161459204025,7.45947924184864,0.12269149171914,0,0,0.207970861530807,0.535286966391485,0.473107245101804,0.35142424497814,0,2.27407504055985,0,0,0,2.69339204851057,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0.61384789315225,0.280660094433074,1.28139149255701,1.02341449813341,0.160853921143607,0,0,0,0.246381468041427,0,0.348631135379878,0,0,0,0.34444334449382,0.910455840033585,0,0.451199612907412,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,2.82095137628028,1.31205858279882,2.60302715731442,0.206082023295445,0.915694648183434,1.15513299888823,0,0,0,0.193341436584244,0.154048617114644,0.15350367472613,0.275673144969061,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0,0,0,0,1.47775344708365,0.658589785919804,0,0,0,0,0,0.282431402330337,0,0,0,0,1.52234282769651,1.52927441428475,0.569647187174163,0.714695326373367,0.822724546172388,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,1.31857361344705,0,0,0,0.23874448473769,0,0,1.9882952955326,0.703347082052564,1.00177834520615,0,0,13.7481111893238,0,0,0.20453736500431,0,0.622079175323615,0.179736702294654,0.179021174675609,0,0.591860433821602,0,0,0.969332746095218,1.85536196323703,1.99613798001194,0,0.174919999992391,0,1.2517279311405,0.254253650292766,0,0,2.04123229368278,0,0,0.844175070377856,0,0.884634079449797,0.886642856860642,2.85201016300164,0.653630781113941,0.139423744278603,1.15425387755696,0.91153644677601,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.265372693510018,0,0.296521128680622,0.494255755786011,0.313265848516366,0.471807930864739,0.802577647298789,0,0,0,0,0.394584402849391,0,0.61214552326098,0.758238955541855,0.150323419414493,0,0,0,0,0,2.27687636823834,0,0,0.195984794828755,0.34823682632161,0.34945333648406,0,1.9351266257817,2.48503678093031,1.31384731285135,0.290967049465258,0,0.451961481561065,0,0.19871461170299,3.73533696139684,0.195551382734803,1.36269994427607,0.426905989478705,1.19885765749278,0,0,0.171594997861965,1.4405479798815,0.49701014226173,0,0.407712618220842,1.04602846312333,0.101998217636322,0,0,0.136905378891993,0,0,2.36598618851383,1.67569440763353,5.04152932825704,0.717873024576814,0.199679000498991,0.429226048136571,0.446342914883745,0.604651252380536,0,0,0,0,0,0,0,2.38568906942791,0.272406812223151,0.321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| |||
|short_description=p3@NOV | |||
}} |
Revision as of 23:31, 22 January 2014
Short description: | p3@NOV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NOV_5end |
Coexpression cluster: | C4722_osteosarcoma_Neutrophils_aorta_Melanocyte_melanoma_Eosinophils_medial |
Association with transcript: | -28bp_to_ENST00000520082_5end |
EntrezGene: | NOV |
HGNC: | 7885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.37e-10 | 14 |
visual pigment cell | 4.48e-08 | 4 |
neutrophil | 2.08e-07 | 3 |
melanocyte | 2.26e-07 | 10 |
melanoblast | 2.26e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.43e-17 | 9 |
regional part of cerebral cortex | 8.02e-13 | 22 |
cerebral hemisphere | 2.88e-12 | 32 |
neocortex | 3.21e-12 | 20 |
pre-chordal neural plate | 7.87e-12 | 61 |
regional part of forebrain | 2.39e-11 | 41 |
forebrain | 2.39e-11 | 41 |
anterior neural tube | 2.39e-11 | 41 |
future forebrain | 2.39e-11 | 41 |
telencephalon | 2.66e-11 | 34 |
cerebral cortex | 6.45e-11 | 25 |
pallium | 6.45e-11 | 25 |
regional part of telencephalon | 1.08e-10 | 32 |
brain grey matter | 7.69e-10 | 34 |
gray matter | 7.69e-10 | 34 |
neural plate | 8.37e-10 | 82 |
presumptive neural plate | 8.37e-10 | 82 |
central nervous system | 4.98e-09 | 81 |
neurectoderm | 5.06e-09 | 86 |
adult organism | 1.44e-08 | 114 |
ecto-epithelium | 2.16e-08 | 104 |
nervous system | 3.25e-08 | 89 |
neural tube | 5.47e-08 | 56 |
neural rod | 5.47e-08 | 56 |
future spinal cord | 5.47e-08 | 56 |
neural keel | 5.47e-08 | 56 |
gyrus | 9.83e-08 | 6 |
regional part of nervous system | 1.01e-07 | 53 |
regional part of brain | 1.01e-07 | 53 |
layer of retina | 1.02e-07 | 4 |
brain | 4.29e-07 | 68 |
future brain | 4.29e-07 | 68 |
upper respiratory tract | 4.30e-07 | 19 |