FFCP PHASE1:Hg19::chr8:119634141..119634223,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31750 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N8I0,B8ZZB7,E9PLP5 | |||
|association_with_transcript=0bp_to_ENST00000314727,ENST00000409003,ENST00000526328,NM_001101676,NM_207506,uc003yom.2,uc010mda.1_5end | |||
|coexpression_cluster_id=C652 | |||
|description=CAGE_peak_1_at_SAMD12_5end | |||
|id=chr8:119634141..119634223,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.35e-07,53;CL:0000051,6.35e-07,53;CL:0000838,6.56e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.93e-09;82 | |||
|ontology_enrichment_disease=DOID:305!5.36e-12!106;DOID:0050687!9.81e-10!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.77e-12,106;DOID:0050687,2.26e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.79e-36!115;UBERON:0001049!6.55e-26!57;UBERON:0005068!6.55e-26!57;UBERON:0006241!6.55e-26!57;UBERON:0007135!6.55e-26!57;UBERON:0005743!4.07e-23!86;UBERON:0002780!8.47e-23!41;UBERON:0001890!8.47e-23!41;UBERON:0006240!8.47e-23!41;UBERON:0001017!1.02e-22!82;UBERON:0000955!3.78e-22!69;UBERON:0006238!3.78e-22!69;UBERON:0003080!5.13e-22!42;UBERON:0000073!1.13e-21!94;UBERON:0001016!1.13e-21!94;UBERON:0002616!2.07e-21!59;UBERON:0003075!1.18e-18!86;UBERON:0007284!1.18e-18!86;UBERON:0001893!2.19e-18!34;UBERON:0002020!2.63e-18!34;UBERON:0003528!2.63e-18!34;UBERON:0002791!1.00e-17!33;UBERON:0001869!2.82e-17!32;UBERON:0002346!4.21e-17!90;UBERON:0003056!4.33e-16!61;UBERON:0002619!1.43e-14!22;UBERON:0000153!4.46e-14!129;UBERON:0007811!4.46e-14!129;UBERON:0000033!1.30e-13!123;UBERON:0001950!2.25e-13!20;UBERON:0000956!5.60e-13!25;UBERON:0000203!5.60e-13!25;UBERON:0004121!1.01e-09!169;UBERON:0000924!4.16e-09!173;UBERON:0006601!4.16e-09!173;UBERON:0000064!5.99e-09!219;UBERON:0001007!8.56e-08!155;UBERON:0001555!8.56e-08!155;UBERON:0007026!8.56e-08!155;UBERON:0004921!2.55e-07!129;UBERON:0004185!2.55e-07!129;UBERON:0000481!4.13e-07!347;UBERON:0002420!4.32e-07!9;UBERON:0007245!4.32e-07!9;UBERON:0010009!4.32e-07!9;UBERON:0010011!4.32e-07!9;UBERON:0000454!4.32e-07!9;UBERON:0004119!6.87e-07!169;UBERON:0000925!6.87e-07!169;UBERON:0006595!6.87e-07!169;UBERON:0002308!7.06e-07!9;UBERON:0000125!7.06e-07!9;UBERON:0000477!8.16e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.70e-17;41!UBERON:0001890;2.70e-17;41!UBERON:0001893;1.39e-16;34!UBERON:0003528;2.26e-16;34!UBERON:0002020;2.26e-16;34!UBERON:0001869;2.69e-16;32!UBERON:0002791;3.10e-16;32!UBERON:0000073;1.41e-15;53!UBERON:0002616;1.41e-15;53!UBERON:0002619;2.53e-15;22!UBERON:0001950;4.63e-14;20!UBERON:0000956;1.41e-13;25!UBERON:0000203;1.41e-13;25!UBERON:0007023;8.68e-11;114!UBERON:0001017;8.99e-11;75!UBERON:0000955;2.24e-10;68!UBERON:0001016;5.18e-09;83!UBERON:0002420;2.11e-07;9!UBERON:0007245;2.11e-07;9!UBERON:0010009;2.11e-07;9!UBERON:0010011;2.11e-07;9!UBERON:0000454;2.11e-07;9!UBERON:0000125;3.60e-07;9!UBERON:0002308;3.60e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.10e-36,114;UBERON:0001049,5.48e-28,56;UBERON:0005068,5.48e-28,56;UBERON:0006241,5.48e-28,56;UBERON:0007135,5.48e-28,56;UBERON:0000073,2.43e-26,53;UBERON:0002616,2.43e-26,53;UBERON:0011216,3.54e-24,223;UBERON:0002780,6.67e-24,41;UBERON:0001890,6.67e-24,41;UBERON:0003080,6.67e-24,41;UBERON:0006240,6.67e-24,41;UBERON:0001017,1.29e-23,81;UBERON:0000955,4.19e-23,68;UBERON:0006238,4.19e-23,68;UBERON:0001016,5.03e-22,89;UBERON:0003075,1.95e-21,82;UBERON:0007284,1.95e-21,82;UBERON:0002346,2.02e-19,86;UBERON:0001893,2.93e-19,34;UBERON:0003528,3.55e-19,34;UBERON:0002020,3.55e-19,34;UBERON:0003056,2.50e-18,61;UBERON:0001869,4.31e-18,32;UBERON:0002791,5.32e-18,32;UBERON:0002619,3.03e-15,22;UBERON:0010371,5.78e-15,104;UBERON:0001950,5.49e-14,20;UBERON:0000956,1.43e-13,25;UBERON:0000203,1.43e-13,25;UBERON:0004121,9.08e-09,171;UBERON:0000924,9.08e-09,171;UBERON:0006601,9.08e-09,171;UBERON:0010314,2.80e-08,132;UBERON:0004921,1.79e-07,118;UBERON:0002420,2.23e-07,9;UBERON:0007245,2.23e-07,9;UBERON:0010009,2.23e-07,9;UBERON:0010011,2.23e-07,9;UBERON:0000454,2.23e-07,9;UBERON:0000125,3.73e-07,9;UBERON:0002308,3.73e-07,9;UBERON:0001007,6.51e-07,145;UBERON:0001555,6.51e-07,145;UBERON:0007026,6.51e-07,145 | |||
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| |||
|short_description=p1@SAMD12 | |||
}} |
Revision as of 23:29, 22 January 2014
Short description: | p1@SAMD12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAMD12_5end |
Coexpression cluster: | C652_cerebellum_occipital_pineal_pituitary_medial_parietal_amygdala |
Association with transcript: | 0bp_to_ENST00000314727, ENST00000409003, ENST00000526328, NM_001101676, NM_207506, uc003yom.2, uc010mda.1_5end |
EntrezGene: | SAMD12 |
HGNC: | 31750 |
UniProt: | Q8N8I0B8ZZB7E9PLP5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.35e-07 | 53 |
common lymphoid progenitor | 6.35e-07 | 53 |
lymphoid lineage restricted progenitor cell | 6.56e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.77e-12 | 106 |
cell type cancer | 2.26e-09 | 143 |