FFCP PHASE1:Hg19::chr7:22769140..22769153,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4675 | |||
|description=CAGE_peak_at_chr7:22769140..22769153,+ | |||
|id=chr7:22769140..22769153,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.07e-10!42;CL:0000860!1.94e-09!45;CL:0000569!2.40e-09!4;CL:0000011!2.40e-09!4;CL:0000048!3.33e-09!430;CL:0000359!4.30e-09!32;CL:0000723!7.63e-09!436;CL:0000034!2.22e-08!444;CL:0002595!2.88e-08!5;CL:0002494!1.75e-07!16;CL:0002194!3.06e-07!63;CL:0000576!3.06e-07!63;CL:0000040!3.06e-07!63;CL:0000559!3.06e-07!63;CL:0002009!6.86e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.66e-18;33!CL:0002057;7.66e-18;33!CL:0002593;9.98e-18;2!CL:0002595;1.08e-15;5!CL:0000473;3.06e-12;39!CL:0000234;3.06e-12;39!CL:0000576;9.58e-08;48!CL:0002552;1.89e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002593,1.34e-17,2;CL:0002595,1.22e-15,5;CL:0000860,4.27e-15,42;CL:0002057,4.27e-15,42;CL:0000473,4.81e-13,48;CL:0000234,4.81e-13,48;CL:0002194,3.60e-10,59;CL:0000576,3.60e-10,59;CL:0000040,3.60e-10,59;CL:0000559,3.60e-10,59;CL:0002009,8.47e-10,61;CL:0000839,5.74e-09,66;CL:0000557,8.13e-09,67;CL:0000766,4.03e-08,72;CL:0002552,1.72e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;3.18e-10;42 | |||
|ontology_enrichment_disease=DOID:2394!1.09e-11!14;DOID:120!1.22e-07!27;DOID:193!5.99e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:3112;1.68e-09;1!DOID:3571;1.68e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.25e-09,1;DOID:3112,2.08e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002204!2.87e-09!167;UBERON:0003081!5.50e-09!216;UBERON:0004573!1.06e-08!33;UBERON:0004571!1.06e-08!33;UBERON:0003834!2.88e-08!5;UBERON:0001533!2.88e-08!5;UBERON:0004872!5.78e-08!84;UBERON:0002118!1.16e-07!5;UBERON:0004532!1.16e-07!5;UBERON:0003513!1.23e-07!8;UBERON:0001637!2.88e-07!42;UBERON:0003509!2.88e-07!42;UBERON:0004572!2.88e-07!42;UBERON:0003914!3.07e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0002456;9.98e-18;2!UBERON:0003834;1.08e-15;5!UBERON:0001533;1.08e-15;5!UBERON:0003513;2.28e-11;7!UBERON:0001282;1.68e-09;1!UBERON:0009842;1.68e-09;1!UBERON:0003704;1.68e-09;1!UBERON:0001171;1.68e-09;1!UBERON:0001172;1.68e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002456,1.34e-17,2;UBERON:0003834,1.22e-15,5;UBERON:0001533,1.22e-15,5;UBERON:0003513,2.49e-11,7;UBERON:0001282,2.67e-09,1;UBERON:0009842,2.67e-09,1;UBERON:0003704,2.67e-09,1;UBERON:0001171,2.67e-09,1;UBERON:0001172,2.67e-09,1;UBERON:0002204,1.33e-08,167;UBERON:0003081,1.02e-07,203;UBERON:0002371,1.25e-07,76;UBERON:0001474,5.54e-07,82;UBERON:0001434,8.27e-07,100 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,1.20538905604795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0.411167888021826,0.929119112685311,0.28769239232215,0.256160706529101,0,0.689491361473237,0,1.35426486594342,0,0,0,3.97909060082173,0.320929027076094,1.27867425159808,0,0,0,15.6712988859435,5.10646702222026,13.0792672289071,0,0,0,9.08099253950053,2.20966581592539,4.1140110367315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579386075843295,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.264818361626438,0,0,0,1.06748995729705,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,1.48360157567134,0,0,0,0,0,0,0,1.20190447125277,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0.511707249066704,0.64341568457443,0,0,0,0,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0.18532421910392,1.86062352764589,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,4.38684281336312,1.05650146756755,0,0,0,0,2.65375590096488,0.876901770507525,0,0,0,0.30982349809975,0,0,0,0,0,0.633322905892992,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02547850262301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0.0884575645033392,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0,1.44119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33073541132698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0.568209015825267,0,0,0.457680136793847,0.151230923763239,0.777186002913902,4.28779934969938,0,3.14862178514523,0.310525913752519,0,0,0.521745061811734,0.601030435988874,0.380805212168795,0,0.727394636810238,0.751873899297419,0.464033759878494,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,1.14640342257068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:22769140..22769153,+ | |||
}} |
Revision as of 16:01, 22 January 2014
Short description: | p@chr7:22769140..22769153, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:22769140..22769153, + |
Coexpression cluster: | C4675_CD14_mesenchymal_Smooth_gall_hepatic_papillary_cholangiocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 1.34e-17 | 2 |
smooth muscle cell of the subclavian artery | 1.22e-15 | 5 |
classical monocyte | 4.27e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.27e-15 | 42 |
defensive cell | 4.81e-13 | 48 |
phagocyte | 4.81e-13 | 48 |
monopoietic cell | 3.60e-10 | 59 |
monocyte | 3.60e-10 | 59 |
monoblast | 3.60e-10 | 59 |
promonocyte | 3.60e-10 | 59 |
macrophage dendritic cell progenitor | 8.47e-10 | 61 |
myeloid lineage restricted progenitor cell | 5.74e-09 | 66 |
granulocyte monocyte progenitor cell | 8.13e-09 | 67 |
myeloid leukocyte | 4.03e-08 | 72 |
fibroblast of gingiva | 1.72e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
internal thoracic artery | 1.34e-17 | 2 |
thoracic segment blood vessel | 1.22e-15 | 5 |
subclavian artery | 1.22e-15 | 5 |
trunk blood vessel | 2.49e-11 | 7 |
intralobular bile duct | 2.67e-09 | 1 |
acinus | 2.67e-09 | 1 |
intrahepatic bile duct | 2.67e-09 | 1 |
portal lobule | 2.67e-09 | 1 |
hepatic acinus | 2.67e-09 | 1 |
musculoskeletal system | 1.33e-08 | 167 |
lateral plate mesoderm | 1.02e-07 | 203 |
bone marrow | 1.25e-07 | 76 |
bone element | 5.54e-07 | 82 |
skeletal system | 8.27e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.25e-09 | 1 |
papillary adenocarcinoma | 2.08e-09 | 1 |