FFCP PHASE1:Mm9::chr2:136213476..136213534,-: Difference between revisions
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{{FFCP|EntrezGene=241656|HGNC=|MCL_coexpression_id=2|UniProt=Q8C015|association_with_transcript=139bp_to_ENSMUST00000035264_5end|description=CAGE_peak_1_at_Pak7_5end|id=chr2:136213476..136213534,-|ontology_enrichment_celltype=CL:0000540!1.39e-13!33;CL:0000047!1.39e-13!33;CL:0000031!1.39e-13!33;CL:0000404!1.39e-13!33;CL:0000117!1.24e-12!23;CL:0000337!1.24e-12!23;CL:0000393!5.89e-09!39;CL:0000211!5.89e-09!39;CL:0000221!9.05e-09!44;CL:0000133!9.05e-09!44;CL:0002319!9.44e-09!43|ontology_enrichment_celltype_v019_2=CL:0000540,1.87e-15,33;CL:0000047,1.87e-15,33;CL:0000031,1.87e-15,33;CL:0000404,1.87e-15,33;CL:0000117,2.33e-14,23;CL:0000337,2.33e-14,23;CL:0000393,4.70e-11,39;CL:0000211,4.70e-11,39;CL:0000221,2.09e-09,44;CL:0000133,2.09e-09,44;CL:0002319,2.22e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.60e-24!71;UBERON:0003075!1.60e-24!71;UBERON:0007284!1.60e-24!71;UBERON:0001017!1.77e-24!73;UBERON:0005743!1.77e-24!73;UBERON:0000073!8.39e-24!75;UBERON:0001016!8.39e-24!75;UBERON:0004121!1.00e-22!102;UBERON:0000924!1.00e-22!102;UBERON:0006601!1.00e-22!102;UBERON:0000033!1.89e-22!63;UBERON:0003056!4.18e-21!49;UBERON:0001049!7.12e-21!52;UBERON:0005068!7.12e-21!52;UBERON:0006241!7.12e-21!52;UBERON:0007135!7.12e-21!52;UBERON:0000955!1.88e-19!50;UBERON:0006238!1.88e-19!50;UBERON:0002616!8.66e-19!49;UBERON:0002020!4.14e-18!34;UBERON:0003080!6.15e-17!40;UBERON:0002780!2.07e-16!39;UBERON:0001890!2.07e-16!39;UBERON:0006240!2.07e-16!39;UBERON:0002791!1.27e-15!29;UBERON:0003528!1.27e-15!29;UBERON:0001893!1.27e-15!29;UBERON:0000956!1.79e-11!21;UBERON:0001869!1.79e-11!21;UBERON:0000203!1.79e-11!21;UBERON:0000153!2.16e-10!94;UBERON:0007811!5.05e-10!86;UBERON:0002619!3.83e-09!17;UBERON:0002021!1.16e-08!10;UBERON:0000411!1.16e-08!10;UBERON:0001950!1.16e-08!10;UBERON:0000468!2.11e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.86e-30,64;UBERON:0003075,7.86e-30,64;UBERON:0007284,7.86e-30,64;UBERON:0001017,4.22e-28,73;UBERON:0001016,1.37e-26,75;UBERON:0004121,3.07e-25,95;UBERON:0000924,3.07e-25,95;UBERON:0006601,3.07e-25,95;UBERON:0000073,9.74e-25,54;UBERON:0003056,1.31e-24,49;UBERON:0010371,2.87e-24,73;UBERON:0001049,4.12e-24,52;UBERON:0005068,4.12e-24,52;UBERON:0006241,4.12e-24,52;UBERON:0007135,4.12e-24,52;UBERON:0002020,3.53e-21,34;UBERON:0000955,3.61e-21,47;UBERON:0006238,3.61e-21,47;UBERON:0002616,2.08e-20,46;UBERON:0003080,8.98e-20,40;UBERON:0002780,3.69e-19,39;UBERON:0001890,3.69e-19,39;UBERON:0006240,3.69e-19,39;UBERON:0010314,1.61e-18,92;UBERON:0003528,2.67e-18,29;UBERON:0002791,2.67e-18,29;UBERON:0001893,2.67e-18,29;UBERON:0000956,1.72e-13,21;UBERON:0001869,1.72e-13,21;UBERON:0000203,1.72e-13,21;UBERON:0002619,8.69e-11,17;UBERON:0002021,9.04e-10,10;UBERON:0000411,9.04e-10,10;UBERON:0001950,9.04e-10,10|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78294373027274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,28.3243045203437,36.5003775697703,24.719424736741,0,0,0,0,0,0.599200221036809,1.15265491596466,24.7818173417262,18.9008313664367,21.8737959805437,10.5690864229407,8.83474163806454,27.8054114217946,20.9901581529938,31.2534387447407,4.40463523997555,10.7257363991558,11.2132769277058,28.6193244374521,37.8758844513976,36.98484930953,4.74611098302348,10.1297269805702,10.0846843532695,16.4992007865254,21.9252388430619,25.5367240780662,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.983110940922263,0,0,0,1.40843419776681,0,0,0,0,0,0,0.68510327831436,0,0,3.64319186208885,4.26251669636998,0.922461989024234,2.26083960828934,3.99801604261396,0,0,0,0,0.161766849947409,0,0,0,15.2246014446005,15.2896095973822,0,0,0,0,16.027598416316,25.1625331550245,38.952849154988,56.3190797422976,57.0245469846637,12.6750707181332,20.2801578834697,3.7680564624617,0,0,8.83855794723191,7.026503919986,6.89706313300419,12.4242869565691,15.5225962370787,19.5264752564311,21.9074461687093,16.1166966242734,17.3331258395141,3.88022387279116,5.67318240503458,3.87092473160687,2.6303487891309,2.22437799380478,0.696504333044333,0.411564272815887,4.37875387000685,0,0,0,0.828503090142008,2.34526059981096,1.98068267607116,2.13070262026689,0.590292695242212,0.617068451549513,0.697601834251224,0.268273401399619,0.583826711835847,0.16455984991348,0.492502392237286,0.162137619091711,0,0,0,22.7113144449257,68.6373764569827,0,0,3.62590025909898,4.64473343720877,2.96395161040815,2.8235693447268,0.22237804384487,0.570676878337677,0,0.494096864172033,0.502670417600539,0.397912944082302,0,0,0.216138049874694,0.199141273254367,2.84501851429623,3.77020091612105,2.25415471346161,2.64746726198909,1.93952487167626,0.98190147846446,0.822074982615345,0.147610147979602,0.156998727841375,0,0,0.83422552858047,0.786235980452812,0.224862112384854,0.202860121388503,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,1.89491411770485,3.42226450528254,1.18821560042632,0.938760993154008,1.00503754465089,0.952174563544055,0.390267295715598,0.4729054323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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:241656 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8C015 | |||
|association_with_transcript=139bp_to_ENSMUST00000035264_5end | |||
|cluster_id=chr2:136213476..136213534,- | |||
|description=CAGE_peak_1_at_Pak7_5end | |||
|id=chr2:136213476..136213534,- | |||
|ontology_enrichment_celltype=CL:0000540!1.39e-13!33;CL:0000047!1.39e-13!33;CL:0000031!1.39e-13!33;CL:0000404!1.39e-13!33;CL:0000117!1.24e-12!23;CL:0000337!1.24e-12!23;CL:0000393!5.89e-09!39;CL:0000211!5.89e-09!39;CL:0000221!9.05e-09!44;CL:0000133!9.05e-09!44;CL:0002319!9.44e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.87e-15,33;CL:0000047,1.87e-15,33;CL:0000031,1.87e-15,33;CL:0000404,1.87e-15,33;CL:0000117,2.33e-14,23;CL:0000337,2.33e-14,23;CL:0000393,4.70e-11,39;CL:0000211,4.70e-11,39;CL:0000221,2.09e-09,44;CL:0000133,2.09e-09,44;CL:0002319,2.22e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.60e-24!71;UBERON:0003075!1.60e-24!71;UBERON:0007284!1.60e-24!71;UBERON:0001017!1.77e-24!73;UBERON:0005743!1.77e-24!73;UBERON:0000073!8.39e-24!75;UBERON:0001016!8.39e-24!75;UBERON:0004121!1.00e-22!102;UBERON:0000924!1.00e-22!102;UBERON:0006601!1.00e-22!102;UBERON:0000033!1.89e-22!63;UBERON:0003056!4.18e-21!49;UBERON:0001049!7.12e-21!52;UBERON:0005068!7.12e-21!52;UBERON:0006241!7.12e-21!52;UBERON:0007135!7.12e-21!52;UBERON:0000955!1.88e-19!50;UBERON:0006238!1.88e-19!50;UBERON:0002616!8.66e-19!49;UBERON:0002020!4.14e-18!34;UBERON:0003080!6.15e-17!40;UBERON:0002780!2.07e-16!39;UBERON:0001890!2.07e-16!39;UBERON:0006240!2.07e-16!39;UBERON:0002791!1.27e-15!29;UBERON:0003528!1.27e-15!29;UBERON:0001893!1.27e-15!29;UBERON:0000956!1.79e-11!21;UBERON:0001869!1.79e-11!21;UBERON:0000203!1.79e-11!21;UBERON:0000153!2.16e-10!94;UBERON:0007811!5.05e-10!86;UBERON:0002619!3.83e-09!17;UBERON:0002021!1.16e-08!10;UBERON:0000411!1.16e-08!10;UBERON:0001950!1.16e-08!10;UBERON:0000468!2.11e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.86e-30,64;UBERON:0003075,7.86e-30,64;UBERON:0007284,7.86e-30,64;UBERON:0001017,4.22e-28,73;UBERON:0001016,1.37e-26,75;UBERON:0004121,3.07e-25,95;UBERON:0000924,3.07e-25,95;UBERON:0006601,3.07e-25,95;UBERON:0000073,9.74e-25,54;UBERON:0003056,1.31e-24,49;UBERON:0010371,2.87e-24,73;UBERON:0001049,4.12e-24,52;UBERON:0005068,4.12e-24,52;UBERON:0006241,4.12e-24,52;UBERON:0007135,4.12e-24,52;UBERON:0002020,3.53e-21,34;UBERON:0000955,3.61e-21,47;UBERON:0006238,3.61e-21,47;UBERON:0002616,2.08e-20,46;UBERON:0003080,8.98e-20,40;UBERON:0002780,3.69e-19,39;UBERON:0001890,3.69e-19,39;UBERON:0006240,3.69e-19,39;UBERON:0010314,1.61e-18,92;UBERON:0003528,2.67e-18,29;UBERON:0002791,2.67e-18,29;UBERON:0001893,2.67e-18,29;UBERON:0000956,1.72e-13,21;UBERON:0001869,1.72e-13,21;UBERON:0000203,1.72e-13,21;UBERON:0002619,8.69e-11,17;UBERON:0002021,9.04e-10,10;UBERON:0000411,9.04e-10,10;UBERON:0001950,9.04e-10,10 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78294373027274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,28.3243045203437,36.5003775697703,24.719424736741,0,0,0,0,0,0.599200221036809,1.15265491596466,24.7818173417262,18.9008313664367,21.8737959805437,10.5690864229407,8.83474163806454,27.8054114217946,20.9901581529938,31.2534387447407,4.40463523997555,10.7257363991558,11.2132769277058,28.6193244374521,37.8758844513976,36.98484930953,4.74611098302348,10.1297269805702,10.0846843532695,16.4992007865254,21.9252388430619,25.5367240780662,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.983110940922263,0,0,0,1.40843419776681,0,0,0,0,0,0,0.68510327831436,0,0,3.64319186208885,4.26251669636998,0.922461989024234,2.26083960828934,3.99801604261396,0,0,0,0,0.161766849947409,0,0,0,15.2246014446005,15.2896095973822,0,0,0,0,16.027598416316,25.1625331550245,38.952849154988,56.3190797422976,57.0245469846637,12.6750707181332,20.2801578834697,3.7680564624617,0,0,8.83855794723191,7.026503919986,6.89706313300419,12.4242869565691,15.5225962370787,19.5264752564311,21.9074461687093,16.1166966242734,17.3331258395141,3.88022387279116,5.67318240503458,3.87092473160687,2.6303487891309,2.22437799380478,0.696504333044333,0.411564272815887,4.37875387000685,0,0,0,0.828503090142008,2.34526059981096,1.98068267607116,2.13070262026689,0.590292695242212,0.617068451549513,0.697601834251224,0.268273401399619,0.583826711835847,0.16455984991348,0.492502392237286,0.162137619091711,0,0,0,22.7113144449257,68.6373764569827,0,0,3.62590025909898,4.64473343720877,2.96395161040815,2.8235693447268,0.22237804384487,0.570676878337677,0,0.494096864172033,0.502670417600539,0.397912944082302,0,0,0.216138049874694,0.199141273254367,2.84501851429623,3.77020091612105,2.25415471346161,2.64746726198909,1.93952487167626,0.98190147846446,0.822074982615345,0.147610147979602,0.156998727841375,0,0,0.83422552858047,0.786235980452812,0.224862112384854,0.202860121388503,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,1.89491411770485,3.42226450528254,1.18821560042632,0.938760993154008,1.00503754465089,0.952174563544055,0.390267295715598,0.472905432318573,0.44292937929755,0.318909537314974,0,0.172684981865896,0,0,0,0,0,14.2890025089135,17.2301179290539,0,0,3.47059041357882,3.12350995437311,6.24727853425117,1.67278158566786,3.7875774594007,3.96307143104365,5.66734982344852,5.26060544240361,8.69633111482352,30.8468463764935,0.141940085208269,4.27357448801413,6.18970445543589,0,0,2.18502572539483,0.906970670894253,1.32023555829129,0.590603785761546,0.614870295887855,0.775284879504663,0,0.356497378384721,0.316036757935816,0,0,1.36175842301515,5.221771726908,1.94038025674132,1.28602221018955,1.95074257006501,2.49716344642899,3.45552943264454,1.8267896946876,0,0,0,0,0.322928853391811,0.0603129249281559,0.119372344003136,0.164140899745061,0,21.5093350332191,0,2.06386867963222,0.925972636848558,0,0,0,0,0,0,0,4.11236791655476,3.25311147402958,2.70013352054503,1.46361807210128,1.74690050996942,1.21377911746339,0.495920734352016,0,0.129614973291793,0,0,1.04661582230785,2.15096037594227,1.55560950675238,1.54991788173277,1.85851738039856,0.938857909166032,0.2604087696879,0.104859344425711,0,0.288030006257865,0,1.21635129174099,0.308132871494482,0,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0.443971906748129,0,0,0.19318959403219,0,0.183151624267265,0,0,83.5832727073258,82.8585425712918,76.7679988008791,58.2582288145101,96.5966352876606,92.9134493789332,89.7779925308302,89.1635982383957,85.1907728890305,58.5069152279557,7.47268902606072,24.3405172774629,13.1464876430683,9.23805524859517,13.2056292455629,8.27295788025063,8.44537565646138,10.7138229764225,10.9112531261217,11.3713745293709,9.88569269571935,12.0720858487089,7.95952813494,8.83547103187196,9.5342878466318,12.859929664643,9.50251472747815,6.55891349576597,9.47797571847605,9.86232764900462,8.22886205724997,10.2935967572416,8.58370283810355,9.73820991436601,8.94039113945641,8.46146078916765,8.23175877927476,9.47050961176234,9.2346797415186,12.906272248128,8.30445126869219,7.78185410766951,9.41231399290286,8.52152626522813,6.75173138433995,14.4890135204009,7.25187986180766,9.02458427002853,2.67803664896381,1.10295709559758,1.15933917810211 | |||
|short_description=p1@Pak7 | |||
}} |
Revision as of 03:37, 4 August 2015
Short description: | p1@Pak7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pak7_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 139bp_to_ENSMUST00000035264_5end |
EntrezGene: | 241656 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.87e-15 | 33 |
neuronal stem cell | 1.87e-15 | 33 |
neuroblast | 1.87e-15 | 33 |
electrically signaling cell | 1.87e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.33e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.33e-14 | 23 |
electrically responsive cell | 4.70e-11 | 39 |
electrically active cell | 4.70e-11 | 39 |
ectodermal cell | 2.09e-09 | 44 |
neurectodermal cell | 2.09e-09 | 44 |
neural cell | 2.22e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 7.86e-30 | 64 |
neural plate | 7.86e-30 | 64 |
presumptive neural plate | 7.86e-30 | 64 |
central nervous system | 4.22e-28 | 73 |
nervous system | 1.37e-26 | 75 |
ectoderm-derived structure | 3.07e-25 | 95 |
ectoderm | 3.07e-25 | 95 |
presumptive ectoderm | 3.07e-25 | 95 |
regional part of nervous system | 9.74e-25 | 54 |
pre-chordal neural plate | 1.31e-24 | 49 |
ecto-epithelium | 2.87e-24 | 73 |
neural tube | 4.12e-24 | 52 |
neural rod | 4.12e-24 | 52 |
future spinal cord | 4.12e-24 | 52 |
neural keel | 4.12e-24 | 52 |
gray matter | 3.53e-21 | 34 |
brain | 3.61e-21 | 47 |
future brain | 3.61e-21 | 47 |
regional part of brain | 2.08e-20 | 46 |
anterior neural tube | 8.98e-20 | 40 |
regional part of forebrain | 3.69e-19 | 39 |
forebrain | 3.69e-19 | 39 |
future forebrain | 3.69e-19 | 39 |
structure with developmental contribution from neural crest | 1.61e-18 | 92 |
brain grey matter | 2.67e-18 | 29 |
regional part of telencephalon | 2.67e-18 | 29 |
telencephalon | 2.67e-18 | 29 |
cerebral cortex | 1.72e-13 | 21 |
cerebral hemisphere | 1.72e-13 | 21 |
pallium | 1.72e-13 | 21 |
regional part of cerebral cortex | 8.69e-11 | 17 |
occipital lobe | 9.04e-10 | 10 |
visual cortex | 9.04e-10 | 10 |
neocortex | 9.04e-10 | 10 |