FFCP PHASE1:Mm9::chr1:74648015..74648094,+: Difference between revisions
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{{FFCP|EntrezGene=269209|HGNC=|MCL_coexpression_id=0|UniProt=E9QNC4,E9Q8E4,Q69ZM6,Q9D9B2,E9Q341|association_with_transcript=0bp_to_ENSMUST00000042446,ENSMUST00000087183,ENSMUST00000113694,ENSMUST00000113699,ENSMUST00000145673,ENSMUST00000148456,NM_175031,uc007bmu.1,uc007bmv.1_5end|description=CAGE_peak_1_at_Stk36_5end|id=chr1:74648015..74648094,+|ontology_enrichment_celltype=CL:0000221!8.46e-13!44;CL:0000133!8.46e-13!44;CL:0000055!1.40e-12!50;CL:0002319!1.48e-12!43;CL:0000393!2.75e-09!39;CL:0000211!2.75e-09!39;CL:0000117!6.99e-09!23;CL:0000337!6.99e-09!23;CL:0000540!8.85e-09!33;CL:0000047!8.85e-09!33;CL:0000031!8.85e-09!33;CL:0000404!8.85e-09!33|ontology_enrichment_celltype_v019_2=CL:0000221,6.40e-13,44;CL:0000133,6.40e-13,44;CL:0002319,1.13e-12,43;CL:0000393,2.27e-09,39;CL:0000211,2.27e-09,39;CL:0000117,5.83e-09,23;CL:0000337,5.83e-09,23;CL:0000540,7.40e-09,33;CL:0000047,7.40e-09,33;CL:0000031,7.40e-09,33;CL:0000404,7.40e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.12e-17!73;UBERON:0005743!3.12e-17!73;UBERON:0004121!7.12e-17!102;UBERON:0000924!7.12e-17!102;UBERON:0006601!7.12e-17!102;UBERON:0000073!8.42e-17!75;UBERON:0001016!8.42e-17!75;UBERON:0002346!2.31e-15!71;UBERON:0003075!2.31e-15!71;UBERON:0007284!2.31e-15!71;UBERON:0000033!1.24e-14!63;UBERON:0003056!1.80e-13!49;UBERON:0001049!1.75e-12!52;UBERON:0005068!1.75e-12!52;UBERON:0006241!1.75e-12!52;UBERON:0007135!1.75e-12!52;UBERON:0000955!1.93e-11!50;UBERON:0006238!1.93e-11!50;UBERON:0002616!3.83e-11!49;UBERON:0003080!4.82e-10!40;UBERON:0002780!9.72e-10!39;UBERON:0001890!9.72e-10!39;UBERON:0006240!9.72e-10!39;UBERON:0002020!8.11e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.03e-17,73;UBERON:0004121,2.96e-17,95;UBERON:0000924,2.96e-17,95;UBERON:0006601,2.96e-17,95;UBERON:0001016,5.55e-17,75;UBERON:0002346,3.85e-16,64;UBERON:0003075,3.85e-16,64;UBERON:0007284,3.85e-16,64;UBERON:0010371,4.01e-14,73;UBERON:0003056,1.29e-13,49;UBERON:0001049,1.29e-12,52;UBERON:0005068,1.29e-12,52;UBERON:0006241,1.29e-12,52;UBERON:0007135,1.29e-12,52;UBERON:0000073,1.32e-12,54;UBERON:0000955,1.71e-11,47;UBERON:0006238,1.71e-11,47;UBERON:0002616,3.40e-11,46;UBERON:0010314,5.17e-11,92;UBERON:0003080,3.76e-10,40;UBERON:0002780,7.64e-10,39;UBERON:0001890,7.64e-10,39;UBERON:0006240,7.64e-10,39;UBERON:0002020,6.89e-07,34|phase1_expression=13.6126520039075,0,0,0,0,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0.404950534779652,0.699561878128147,0,0.137114433605739,0,69.6504546337261,1.09220046320974,0.783599367416806,0.319984845586813,0,0,0,0.430942465371778,0.190023419456374,0.252030129759931,0,0,0,0,0.288851619751275,0.498703936075477,0,1.67412652294763,1.5626706890476,1.0470474879476,1.17646297606203,0.683045484958446,1.94204141212461,6.42073771675444,6.2853697356099,8.07605709511399,10.1710874765245,19.1862137614793,22.6276768216506,18.8597002102055,13.7186693192855,33.0630898039435,0,0,0,4.11615097657515,4.58453503902011,6.70373719960675,16.7922662513466,16.9277113367051,13.9442908771359,9.14880236586657,8.89294796111139,2.6996991518442,1.97773272513395,3.5524005747305,16.4780060785123,35.7323023949046,17.0050964185903,21.6009501330705,14.302097371894,7.14127461009509,5.07997644188711,13.229006315215,13.0349840584801,16.5459381589804,3.30347642998166,6.76742891851495,6.14426133024974,21.8931237632122,20.4017445233374,18.7528813400434,4.4669279840221,7.31591393041184,6.87592114995646,7.95497180778903,10.3931326983345,10.6247684120421,2.12033341332915,4.98772296704784,7.24661221754194,1.72084775396277,0.679971333707751,2.15881276655127,1.29955283489534,0,6.03911006566533,4.4311883870295,3.63700406444016,3.88673531961374,7.18301440861071,3.84979432242953,0,0,2.81438353314578,2.53359865475099,3.0331466700887,7.19358442230078,0.517875767294343,6.08612770165782,4.51061849591953,6.08930956624282,3.68984795609694,4.06951129492081,4.11560474974967,3.51866455723091,3.46072954828123,1.59059292611903,0.884610551949874,1.45590164952668,1.10420759230197,0.969750506270444,3.72783522436244,5.27005434620785,5.65506108396329,0.255457055208591,0,0,0.254140454146129,8.08869452786043,5.03250663100489,7.53926112677186,4.86708096538374,3.06858548796397,7.68815764870372,5.353961681236,3.97173519016234,2.11491850037158,3.79084137650512,4.62972082950243,15.354212269599,6.43725892413724,15.48534316326,11.7549757911858,13.6753363294169,13.5800543501941,12.2749259173245,17.5918292102531,10.1316956678436,13.4265316919152,10.7330185740009,6.35667624039967,12.2340789659263,5.57203466435466,3.90986059175093,8.16040493955822,0,0,0.284163499395593,4.55676699578104,4.22146907965973,3.78130329068131,5.91861838963026,3.54175617145327,3.08534225774756,1.62773761325285,3.48755421819505,2.21854150497622,0.658239399653922,0.820837320395476,1.29710095273369,0.438599962275997,0.878200461164203,1.47627060636409,6.51898840548794,18.7286394530298,0.991256348951394,1.32225283331772,10.024547775156,9.52170354627798,5.41243337552792,2.8235693447268,2.44615848229357,1.90225626112559,0,0.823494773620054,0.754005626400808,1.59165177632921,1.36474860983384,2.69645822596266,0.648414149624083,1.1948476395262,7.39704813717019,5.9409226557059,10.1436962105772,5.29493452397817,5.43066964069352,5.04977903210294,7.08249215791682,5.90440591918409,6.27994911365499,6.54004968785543,1.77871576252289,1.50160595144485,1.96558995113203,1.57403478669398,1.21716072833102,0.482354319504834,1.01850340712568,1.43848068725405,0.972811360650212,0.823684239564244,0,0.744281895337007,1.24815069245824,0.757736633841335,1.61457672169721,1.4473305640901,10.5309318394965,5.49525094134406,6.51859905768104,6.62005834523234,7.74477819352057,14.9080569123216,10.7119638398706,7.21994497073856,8.35466263762812,6.2010113101657,7.01600982092943,6.882259218061,7.25276923836761,7.23245292907558,3.01582567878545,1.63171705145613,1.47529281905711,2.75936746304733,5.77982123956051,5.74337264301796,2.29508923527346,2.52470927204373,4.10160685241134,3.12350995437311,8.61693590931196,4.06246956519338,6.46116154838943,4.52922449262132,5.26253912177363,4.9683495844923,6.32460444714438,7.71171159412337,9.9358059645788,6.7664929393557,3.74640006513225,15.8371318053634,6.63725691699814,8.49732226542435,3.62788268357701,3.01768127609437,5.02013217897314,2.76691633149535,3.87642439752332,5.45300594216258,4.9909632973861,1.26414703174326,4.21674434299995,1.03135543248187,18.7241783164583,14.0447653344422,18.2395744133684,18.8616590827801,26.0690143454142,18.0152505778091,16.29035303961,11.2652031172402,3.52007562095566,2.75381692122966,1.98475558249466,1.81374878235628,2.9063596805263,2.83470747162333,1.79058516004705,1.31312719796049,0.582961673259701,5.93360966433631,0.341741761595705,3.09580301944834,1.66675074632741,0.753473828018764,0.136694227721025,0.228778173206523,0.509935289981566,0.979660166265606,0.276399947608848,0.954670618015114,9.64824780422463,3.65975040828328,3.67218158794124,3.97267762427491,4.58561383866973,1.88810084938749,1.23980183588004,0.785267825952089,1.03691978633434,3.10669656543463,460.537130904983,6.57872802593507,4.46737924234164,8.94475466382619,5.16639293910924,8.95467465101124,3.28600268208111,4.9477666240701,4.19437377702843,63.5366237772396,232.440215050097,0.316011120628178,2.63542779877213,3.80030541509861,1.55904987573354,1.25318686967237,2.78153896693771,1.20195449519969,0.738447635872886,0.706765149637033,0.914481679859998,0.504130925684203,0.487289403698762,0.577271049841977,2.10378423926824,0.453460767230423,2.44184548711471,6.2799699626633,3.8613461763738,1.73870634628971,2.62755465631655,6.22715522508701,2.14368379079066,5.517293144389,6.21227026878773,2.76195141904306,8.59343270159095,5.32744865265431,0.685082519770642,0,4.05013500139084,4.05289082901798,4.07828168085784,3.62432218226274,12.7658437528537,16.7590446828433,11.6098851912811,9.96737539980005,6.49800804146745,4.96377472815038,5.778414922842,6.59312183164461,6.09746498224449,5.05394423527595,8.36481689637791,6.03604292435444,5.80577346313271,7.49094283136971,5.74354689556133,8.09699275181225,5.91010062318763,5.20854895252004,5.76920261124629,5.88795680537589,7.20025430009372,5.14679837862079,8.82213902805088,5.66851024866081,6.39943786824248,6.09225176820071,5.48783918618318,6.57674278594607,6.3827933507555,4.48913817326191,4.38949567059444,5.81176446015824,4.91077251803627,5.42278944150881,6.75173138433995,11.7410971630835,7.48581147025307,4.51229213501426,1.3390183244819,1.98532277207564,0.927471342481686|short_description=p1@Stk36}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:269209 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9QNC4,uniprot:E9Q8E4,uniprot:Q69ZM6,uniprot:Q9D9B2,uniprot:E9Q341 | |||
|association_with_transcript=0bp_to_ENSMUST00000042446,ENSMUST00000087183,ENSMUST00000113694,ENSMUST00000113699,ENSMUST00000145673,ENSMUST00000148456,NM_175031,uc007bmu.1,uc007bmv.1_5end | |||
|cluster_id=chr1:74648015..74648094,+ | |||
|description=CAGE_peak_1_at_Stk36_5end | |||
|id=chr1:74648015..74648094,+ | |||
|ontology_enrichment_celltype=CL:0000221!8.46e-13!44;CL:0000133!8.46e-13!44;CL:0000055!1.40e-12!50;CL:0002319!1.48e-12!43;CL:0000393!2.75e-09!39;CL:0000211!2.75e-09!39;CL:0000117!6.99e-09!23;CL:0000337!6.99e-09!23;CL:0000540!8.85e-09!33;CL:0000047!8.85e-09!33;CL:0000031!8.85e-09!33;CL:0000404!8.85e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.40e-13,44;CL:0000133,6.40e-13,44;CL:0002319,1.13e-12,43;CL:0000393,2.27e-09,39;CL:0000211,2.27e-09,39;CL:0000117,5.83e-09,23;CL:0000337,5.83e-09,23;CL:0000540,7.40e-09,33;CL:0000047,7.40e-09,33;CL:0000031,7.40e-09,33;CL:0000404,7.40e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.12e-17!73;UBERON:0005743!3.12e-17!73;UBERON:0004121!7.12e-17!102;UBERON:0000924!7.12e-17!102;UBERON:0006601!7.12e-17!102;UBERON:0000073!8.42e-17!75;UBERON:0001016!8.42e-17!75;UBERON:0002346!2.31e-15!71;UBERON:0003075!2.31e-15!71;UBERON:0007284!2.31e-15!71;UBERON:0000033!1.24e-14!63;UBERON:0003056!1.80e-13!49;UBERON:0001049!1.75e-12!52;UBERON:0005068!1.75e-12!52;UBERON:0006241!1.75e-12!52;UBERON:0007135!1.75e-12!52;UBERON:0000955!1.93e-11!50;UBERON:0006238!1.93e-11!50;UBERON:0002616!3.83e-11!49;UBERON:0003080!4.82e-10!40;UBERON:0002780!9.72e-10!39;UBERON:0001890!9.72e-10!39;UBERON:0006240!9.72e-10!39;UBERON:0002020!8.11e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.03e-17,73;UBERON:0004121,2.96e-17,95;UBERON:0000924,2.96e-17,95;UBERON:0006601,2.96e-17,95;UBERON:0001016,5.55e-17,75;UBERON:0002346,3.85e-16,64;UBERON:0003075,3.85e-16,64;UBERON:0007284,3.85e-16,64;UBERON:0010371,4.01e-14,73;UBERON:0003056,1.29e-13,49;UBERON:0001049,1.29e-12,52;UBERON:0005068,1.29e-12,52;UBERON:0006241,1.29e-12,52;UBERON:0007135,1.29e-12,52;UBERON:0000073,1.32e-12,54;UBERON:0000955,1.71e-11,47;UBERON:0006238,1.71e-11,47;UBERON:0002616,3.40e-11,46;UBERON:0010314,5.17e-11,92;UBERON:0003080,3.76e-10,40;UBERON:0002780,7.64e-10,39;UBERON:0001890,7.64e-10,39;UBERON:0006240,7.64e-10,39;UBERON:0002020,6.89e-07,34 | |||
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| |||
|short_description=p1@Stk36 | |||
}} |
Revision as of 00:15, 6 August 2015
Short description: | p1@Stk36 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stk36_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000042446, ENSMUST00000087183, ENSMUST00000113694, ENSMUST00000113699, ENSMUST00000145673, ENSMUST00000148456, NM_175031, uc007bmu.1, uc007bmv.1_5end |
EntrezGene: | 269209 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.40e-13 | 44 |
neurectodermal cell | 6.40e-13 | 44 |
neural cell | 1.13e-12 | 43 |
electrically responsive cell | 2.27e-09 | 39 |
electrically active cell | 2.27e-09 | 39 |
CNS neuron (sensu Vertebrata) | 5.83e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.83e-09 | 23 |
neuron | 7.40e-09 | 33 |
neuronal stem cell | 7.40e-09 | 33 |
neuroblast | 7.40e-09 | 33 |
electrically signaling cell | 7.40e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.03e-17 | 73 |
ectoderm-derived structure | 2.96e-17 | 95 |
ectoderm | 2.96e-17 | 95 |
presumptive ectoderm | 2.96e-17 | 95 |
nervous system | 5.55e-17 | 75 |
neurectoderm | 3.85e-16 | 64 |
neural plate | 3.85e-16 | 64 |
presumptive neural plate | 3.85e-16 | 64 |
ecto-epithelium | 4.01e-14 | 73 |
pre-chordal neural plate | 1.29e-13 | 49 |
neural tube | 1.29e-12 | 52 |
neural rod | 1.29e-12 | 52 |
future spinal cord | 1.29e-12 | 52 |
neural keel | 1.29e-12 | 52 |
regional part of nervous system | 1.32e-12 | 54 |
brain | 1.71e-11 | 47 |
future brain | 1.71e-11 | 47 |
regional part of brain | 3.40e-11 | 46 |
structure with developmental contribution from neural crest | 5.17e-11 | 92 |
anterior neural tube | 3.76e-10 | 40 |
regional part of forebrain | 7.64e-10 | 39 |
forebrain | 7.64e-10 | 39 |
future forebrain | 7.64e-10 | 39 |
gray matter | 6.89e-07 | 34 |