FFCP PHASE1:Hg19::chr6:160101609..160101626,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-206bp_to_uc003qsf.3_5end | |||
|coexpression_cluster_id=C954 | |||
|description=CAGE_peak_21_at_SOD2_5end | |||
|id=chr6:160101609..160101626,- | |||
|ontology_enrichment_celltype=CL:0002057!4.72e-16!42;CL:0000860!2.35e-15!45;CL:0000766!9.08e-15!76;CL:0002194!2.12e-13!63;CL:0000576!2.12e-13!63;CL:0000040!2.12e-13!63;CL:0000559!2.12e-13!63;CL:0002009!1.74e-12!65;CL:0000839!1.82e-11!70;CL:0000557!4.42e-11!71;CL:0000738!5.44e-07!140;CL:0002087!7.73e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.15e-36;33!CL:0002057;1.15e-36;33!CL:0000473;1.88e-27;39!CL:0000234;1.88e-27;39!CL:0000576;1.36e-20;48!CL:0000766;2.28e-14;69!CL:0000763;5.88e-08;100!CL:0000771;1.54e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.64e-40,42;CL:0002057,4.64e-40,42;CL:0000473,5.20e-37,48;CL:0000234,5.20e-37,48;CL:0000766,1.07e-30,72;CL:0002194,3.69e-28,59;CL:0000576,3.69e-28,59;CL:0000040,3.69e-28,59;CL:0000559,3.69e-28,59;CL:0002009,5.10e-27,61;CL:0000839,1.81e-24,66;CL:0000557,5.26e-24,67;CL:0000763,2.74e-19,108;CL:0000049,2.74e-19,108;CL:0000738,1.12e-13,136;CL:0002087,2.62e-12,115;CL:0002031,1.61e-11,120;CL:0002032,2.91e-11,161;CL:0000837,2.91e-11,161;CL:0000037,1.80e-10,168;CL:0000988,1.50e-09,177;CL:0000048,6.88e-09,427;CL:0000723,1.36e-08,433;CL:0000034,3.28e-08,441;CL:0000134,3.51e-08,354;CL:0002320,8.20e-08,361;CL:0000771,1.45e-07,2;CL:0000219,4.55e-07,386;CL:0000094,9.89e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;6.56e-29;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.03e-10!167;UBERON:0002371!7.81e-10!80;UBERON:0002405!2.51e-09!115;UBERON:0002193!3.18e-09!112;UBERON:0004765!4.82e-09!101;UBERON:0001434!4.82e-09!101;UBERON:0002390!1.02e-08!102;UBERON:0003061!1.02e-08!102;UBERON:0001474!4.45e-08!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.25e-20,76;UBERON:0002405,3.51e-20,93;UBERON:0002193,4.43e-19,108;UBERON:0001474,2.13e-18,82;UBERON:0001434,6.51e-18,100;UBERON:0002390,5.51e-17,98;UBERON:0003061,5.51e-17,98;UBERON:0004765,3.55e-16,90;UBERON:0002204,2.67e-14,167;UBERON:0003081,4.84e-08,203;UBERON:0002384,2.59e-07,371 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,1.0007329835313,0,0.872338524100369,0,0,1.30592814099919,0,0,0,0,0.866364470720326,0.331397375727916,0.672325146451775,3.01347264011988,2.92124036154949,2.92759679274304,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,3.87796785972314,2.60707781711184,2.82114131930607,0.447830948479849,0.32389366601898,0.77272670290256,0,0,0.242584061187816,2.09186133215116,3.28934310417461,1.54853185447552,7.48000220037591,2.30544635876191,1.41889337933151,3.44745680736619,1.29096936716765,1.35426486594342,0.752969358170419,0.818718450173537,1.57306439111559,4.89734227793444,3.20929027076094,4.47535988059329,0.329851300186716,0.997318288108159,0.852449501065388,5.5139755339431,5.10646702222026,6.85104473895132,2.00998932205395,5.73631210262222,1.52032191293582,4.84319602106695,7.73383035573886,7.59509729858123,0,0,0,0,0.150176892841506,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,1.24930726552346,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0,0,0.724232594804119,0,2.91980922181582,0,0,0,0.130979075497713,0,0,0,0,0.398873881556595,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0,0,0,0,2.63560834872127,11.6334079244498,0,0,0.25326102332916,0.397227542439656,0,0,0,0,0.24666754841716,0,0.67355336034844,0.163461903113459,0,0,0,0,0,0.298897361103602,0,0,0,0.204154171254893,0,0.206651562351531,2.37600571456411,0.989067717114227,0,0,0,0.125118519871964,0,0,0.30648779579902,1.65261864797256,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.573609190778008,0,0,0,0,0.252320850875628,0,0,0,0,1.39310378409594,0,0,0,0,0,0,0.237270619111097,0.404493924480493,0,0,0,0,0,0,2.53510069643662,5.89696330006576,0.590789906681404,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,2.45422961193825,5.55582615091933,4.18559134916116,0,0,1.23108503043699,0,0.594524649154913,0,0,0,0.179117045405697,0,0,0,0.088048434013226,0,0.144119953416961,0,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0.799783929456456,0,0.502257091432126,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,2.99602809578873,8.97484377612075,0.828831026872071,0.12269149171914,0,0,0.207970861530807,0,0,0,0,0,0,0,0.184369168541703,0.521301686808497,0,0,0.413536052245775,0.431428401637234,0.106727557803444,0,0,0,0.248107807818777,0,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0.116210378459959,0,0,0.0920809889358963,0,0.364182336013434,0.786746489756545,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0.137836572484531,0.429680979473094,0.580066775656914,0.170453254832202,0.0890320356467374,0,0.192190067365106,0,0,0,0,0.6970372701606,0,0,0,0.37064843820784,0,0,0,0.38126038784765,0,0,0,0,0.359744915166629,0,0.117812402345686,0.404364963146632,0,0,0,1.94970791705028,0,0.136499911407986,0.565621727814851,0,0.551365343546124,0.66343897524122,0.438450885253763,0,0.655894752046633,0,0,0,0,0.294747123039363,0,0,1.26664581178598,1.31717957183961,0,0,0.0962221127255121,0,0,0.847294206991012,0,0,0,0,0,0,0.569647187174163,1.19115887728894,0,0,0.540031437238115,1.58625035258854,0,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,1.4098700508785,0.18714054040822,0.146508179271894,0.242721043499027,0.111443384277478,0,0,0,0,0,0.422008249231538,0.556543525114529,0.16480387422676,0.63337622438398,0.19924798825107,0.552567831062295,0,0.102268682502155,0,0.311039587661807,0,0.537063524026827,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0.583209226766509,0,0,0.361789315876224,0,0.110579259931225,0.295547618953547,0.219385397153973,0.21787692703798,0,0.153900517007594,2.50672522863403,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0.317873157960757,0.421996129056054,0,0.141353071433941,0,0,0.442287822516696,0.611030144933625,0,0.123563938946503,0,0.067401132980677,0,0.468528891450678,0.182454789215666,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0.284609546029793,0,0,0.293977192243133,0.0870592065804026,0,0,0,0.0730893170861856,0.0821154570532092,0,0,0,0,0.19871461170299,0.0633107959558787,0,0.240476460754601,0,0,0,0,0,0.432164393964449,0,0.235694034616795,0.135904206073614,0.209205692624666,0,0,0,0.410716136675979,0,0,0.525774708558629,0.558564802544508,0.687481272035051,25.1255558601885,0,0.429226048136571,1.11585728720936,0.134366944973453,0,0,0.236349546921671,0.247247575143499,0,0.0984274815147488,0.0846733320657845,0,0.272406812223151,0.160753148465019,0,0,0,0,0,0,2.04894838977915,0.104909176269996,0,0,0.191915197319445,0.714695326373367,0.662091970365432,0.25426853765475,0,0,0.653174720218818,0,0,0,0,0.879313402068495,0,0.258565912723101,0.264465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| |||
|short_description=p21@SOD2 | |||
}} |
Revision as of 14:56, 22 January 2014
Short description: | p21@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_21_at_SOD2_5end |
Coexpression cluster: | C954_heart_CD14_Neutrophils_Eosinophils_Lymphatic_renal_Monocytederived |
Association with transcript: | -206bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.64e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.64e-40 | 42 |
defensive cell | 5.20e-37 | 48 |
phagocyte | 5.20e-37 | 48 |
myeloid leukocyte | 1.07e-30 | 72 |
monopoietic cell | 3.69e-28 | 59 |
monocyte | 3.69e-28 | 59 |
monoblast | 3.69e-28 | 59 |
promonocyte | 3.69e-28 | 59 |
macrophage dendritic cell progenitor | 5.10e-27 | 61 |
myeloid lineage restricted progenitor cell | 1.81e-24 | 66 |
granulocyte monocyte progenitor cell | 5.26e-24 | 67 |
myeloid cell | 2.74e-19 | 108 |
common myeloid progenitor | 2.74e-19 | 108 |
leukocyte | 1.12e-13 | 136 |
nongranular leukocyte | 2.62e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.61e-11 | 120 |
hematopoietic oligopotent progenitor cell | 2.91e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.91e-11 | 161 |
hematopoietic stem cell | 1.80e-10 | 168 |
hematopoietic cell | 1.50e-09 | 177 |
multi fate stem cell | 6.88e-09 | 427 |
somatic stem cell | 1.36e-08 | 433 |
stem cell | 3.28e-08 | 441 |
mesenchymal cell | 3.51e-08 | 354 |
connective tissue cell | 8.20e-08 | 361 |
eosinophil | 1.45e-07 | 2 |
motile cell | 4.55e-07 | 386 |
granulocyte | 9.89e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.25e-20 | 76 |
immune system | 3.51e-20 | 93 |
hemolymphoid system | 4.43e-19 | 108 |
bone element | 2.13e-18 | 82 |
skeletal system | 6.51e-18 | 100 |
hematopoietic system | 5.51e-17 | 98 |
blood island | 5.51e-17 | 98 |
skeletal element | 3.55e-16 | 90 |
musculoskeletal system | 2.67e-14 | 167 |
lateral plate mesoderm | 4.84e-08 | 203 |
connective tissue | 2.59e-07 | 371 |