FFCP PHASE1:Hg19::chr6:160101344..160101357,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=45bp_to_uc003qsf.3_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_31_at_SOD2_5end | |||
|id=chr6:160101344..160101357,- | |||
|ontology_enrichment_celltype=CL:0002057!7.05e-24!42;CL:0000860!2.56e-21!45;CL:0000766!2.57e-19!76;CL:0002194!4.62e-19!63;CL:0000576!4.62e-19!63;CL:0000040!4.62e-19!63;CL:0000559!4.62e-19!63;CL:0000839!4.73e-18!70;CL:0002009!5.45e-18!65;CL:0000557!1.17e-16!71;CL:0000763!1.29e-10!112;CL:0000049!1.29e-10!112;CL:0002087!3.70e-07!119;CL:0000738!8.47e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.05e-63;33!CL:0002057;4.05e-63;33!CL:0000473;1.88e-45;39!CL:0000234;1.88e-45;39!CL:0000576;2.19e-29;48!CL:0000766;2.88e-23;69!CL:0000775;4.13e-14;3!CL:0000763;1.14e-11;100!CL:0000094;4.91e-09;8!CL:0002087;5.06e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.08e-57,42;CL:0002057,5.08e-57,42;CL:0000473,1.43e-53,48;CL:0000234,1.43e-53,48;CL:0000766,1.37e-45,72;CL:0002194,1.46e-41,59;CL:0000576,1.46e-41,59;CL:0000040,1.46e-41,59;CL:0000559,1.46e-41,59;CL:0002009,5.18e-40,61;CL:0000839,1.52e-36,66;CL:0000557,6.53e-36,67;CL:0000763,3.99e-28,108;CL:0000049,3.99e-28,108;CL:0000738,6.72e-21,136;CL:0002087,2.07e-18,115;CL:0002031,2.17e-17,120;CL:0002032,1.44e-16,161;CL:0000837,1.44e-16,161;CL:0000037,1.37e-15,168;CL:0000988,1.92e-14,177;CL:0000775,4.04e-14,3;CL:0000048,8.44e-10,427;CL:0000723,1.56e-09,433;CL:0000134,1.93e-09,354;CL:0000034,3.42e-09,441;CL:0002320,4.30e-09,361;CL:0000094,4.61e-09,8;CL:0000219,7.19e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;8.33e-43;42!CL:0000049;7.46e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.39e-17!112;UBERON:0002390!1.54e-16!102;UBERON:0003061!1.54e-16!102;UBERON:0002371!1.81e-15!80;UBERON:0001474!7.01e-14!86;UBERON:0002405!2.07e-13!115;UBERON:0002204!2.42e-12!167;UBERON:0004765!8.59e-12!101;UBERON:0001434!8.59e-12!101;UBERON:0000926!1.79e-08!448;UBERON:0004120!1.79e-08!448;UBERON:0006603!1.79e-08!448;UBERON:0003081!1.23e-07!216;UBERON:0000467!3.12e-07!625;UBERON:0000480!3.81e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.37e-32,108;UBERON:0002371,5.83e-31,76;UBERON:0002405,8.18e-31,93;UBERON:0002390,8.34e-29,98;UBERON:0003061,8.34e-29,98;UBERON:0001474,2.94e-28,82;UBERON:0001434,5.04e-26,100;UBERON:0004765,3.27e-25,90;UBERON:0002204,1.01e-16,167;UBERON:0003081,1.73e-13,203;UBERON:0002384,1.28e-08,371;UBERON:0000926,3.59e-08,315;UBERON:0004120,3.59e-08,315;UBERON:0006603,3.59e-08,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0,0,1.34465029290355,2.41077811209591,0,0.975865597581014,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,1.80490002723128,0.651032612147555,0.223915474239924,0,0,0.436194716338694,0,0.727752183563449,2.55671940596253,2.05583944010913,3.40677007984614,6.90461741573161,3.07392847834921,2.60130452877444,4.48169384957604,1.93645405075148,5.41705946377367,3.57660445130949,1.91034305040492,0.898893937780338,8.57034898638527,1.92557416245656,10.2293940127847,0.989553900560148,1.39624560335142,0.426224750532694,12.1887880224005,5.6738522469114,9.9651559839292,3.01498398308092,5.73631210262222,1.95469960234605,14.5295880632009,2.57794345191295,6.0127853613768,0.422510572623884,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.289693037921647,0,1.94653948121054,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,3.87780264148325,0.436094052142534,0,0,0.397227542439656,0,0.354668382198357,0,0,0,0,0.67355336034844,0.163461903113459,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,2.53510069643662,0.982827216677626,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,1.29929802984966,2.31492756288305,2.47330397904978,0,0,0.492434012174795,0,0.297262324577456,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0.600686115687835,0,0,0,0,0,3.57656445851882,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.899756920638513,0,0,10.5416969741516,0,0,0,0.144781306667579,0.61642896765115,0.358121926479791,0,0.197030760201927,0,0,0,0,0,0,0,7.49007023947182,38.8909896965232,4.55857064779639,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0.114814448164607,0,0.655622074797121,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0.580066775656914,0.0852266274161009,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0.308033580176089,0,0,0,0.286249773483982,0,0.316379424718726,0.571890581771475,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0.487426979262569,0,0,0.424216295861138,0,0,0,0.438450885253763,0,0.655894752046633,0,0.30982349809975,0,0,0,0,0,1.26664581178598,2.30506425071931,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,0.238231775457789,0.822724546172388,1.29694662238543,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0.280797178113459,0,0,0,0,0,0.201799707191048,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.552567831062295,0,0.102268682502155,0,0,0,0.179021174675609,0,0.493217028184668,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0.885741385813839,0,0,0,0.295547618953547,0,0.10893846351899,0,0,0.341826167541004,0,0,0,0.31900115973192,0.0915975934018623,0.533034776018635,0,0.31396051279005,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.52418000472609,0,0,0,0,0,0,0.225980740780532,0,0.397429223405979,0.189932387867636,0,0.160317640503067,0,0,0,0,0,0.288109595976299,0,0,0.135904206073614,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0.837847203816763,0,0.717873024576814,0,0.858452096273142,0.223171457441873,0,0,0,0.0787831823072236,0.0824158583811665,0.202210631562555,0,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0.335434687599266,0.472834243795189,0.0524545881349981,0,0.537862017998534,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0.544017803369474,0.2506898940227,0.612691153526923,0.327872630709804,0,0,0.122026264901963,0,0,0,0.0620964029413835,0.138348634936231,0,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0.189403005275089,0.50313580350515,0,0.457680136793847,0.302461847526478,0,0.147855149989634,0.477890301491107,1.79921244865442,0,0,0,0,0.150257608997218,1.14241563650639,0,0.181848659202559,0.214821114084977,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0.219284049578707,0,0.578742114812744,0.168942440653073,0,0,0,0,0,0,0,0.982829546539238,0.245772908753719,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0.252071696221718,0,0,0,0,0,0,0.115525666150338,0.762764190934334,0,0,0,0,0.781514011233092,0,0.16377191751009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| |||
|short_description=p31@SOD2 | |||
}} |
Revision as of 14:56, 22 January 2014
Short description: | p31@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_31_at_SOD2_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 45bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.08e-57 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.08e-57 | 42 |
defensive cell | 1.43e-53 | 48 |
phagocyte | 1.43e-53 | 48 |
myeloid leukocyte | 1.37e-45 | 72 |
monopoietic cell | 1.46e-41 | 59 |
monocyte | 1.46e-41 | 59 |
monoblast | 1.46e-41 | 59 |
promonocyte | 1.46e-41 | 59 |
macrophage dendritic cell progenitor | 5.18e-40 | 61 |
myeloid lineage restricted progenitor cell | 1.52e-36 | 66 |
granulocyte monocyte progenitor cell | 6.53e-36 | 67 |
myeloid cell | 3.99e-28 | 108 |
common myeloid progenitor | 3.99e-28 | 108 |
leukocyte | 6.72e-21 | 136 |
nongranular leukocyte | 2.07e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 2.17e-17 | 120 |
hematopoietic oligopotent progenitor cell | 1.44e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-16 | 161 |
hematopoietic stem cell | 1.37e-15 | 168 |
hematopoietic cell | 1.92e-14 | 177 |
neutrophil | 4.04e-14 | 3 |
multi fate stem cell | 8.44e-10 | 427 |
somatic stem cell | 1.56e-09 | 433 |
mesenchymal cell | 1.93e-09 | 354 |
stem cell | 3.42e-09 | 441 |
connective tissue cell | 4.30e-09 | 361 |
granulocyte | 4.61e-09 | 8 |
motile cell | 7.19e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.37e-32 | 108 |
bone marrow | 5.83e-31 | 76 |
immune system | 8.18e-31 | 93 |
hematopoietic system | 8.34e-29 | 98 |
blood island | 8.34e-29 | 98 |
bone element | 2.94e-28 | 82 |
skeletal system | 5.04e-26 | 100 |
skeletal element | 3.27e-25 | 90 |
musculoskeletal system | 1.01e-16 | 167 |
lateral plate mesoderm | 1.73e-13 | 203 |
connective tissue | 1.28e-08 | 371 |
mesoderm | 3.59e-08 | 315 |
mesoderm-derived structure | 3.59e-08 | 315 |
presumptive mesoderm | 3.59e-08 | 315 |