FFCP PHASE1:Hg19::chr6:116575329..116575390,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29940 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21144 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z1T3 | |||
|association_with_transcript=0bp_to_ENST00000448740,ENST00000540275,uc011ebf.1_5end | |||
|description=CAGE_peak_2_at_DSE_5end | |||
|id=chr6:116575329..116575390,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.99e-10!53;CL:0000051!3.99e-10!53;CL:0000838!9.60e-10!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.59e-10,53;CL:0000051,1.59e-10,53;CL:0000838,3.99e-10,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.86e-18!57;UBERON:0005068!6.86e-18!57;UBERON:0006241!6.86e-18!57;UBERON:0007135!6.86e-18!57;UBERON:0001017!1.29e-17!82;UBERON:0005743!3.83e-17!86;UBERON:0000073!1.51e-16!94;UBERON:0001016!1.51e-16!94;UBERON:0002616!5.96e-16!59;UBERON:0000955!4.47e-15!69;UBERON:0006238!4.47e-15!69;UBERON:0002780!1.01e-14!41;UBERON:0001890!1.01e-14!41;UBERON:0006240!1.01e-14!41;UBERON:0003080!1.67e-14!42;UBERON:0007023!1.07e-12!115;UBERON:0002791!4.54e-12!33;UBERON:0001893!5.53e-12!34;UBERON:0002020!6.04e-12!34;UBERON:0003528!6.04e-12!34;UBERON:0002346!7.45e-12!90;UBERON:0003075!7.57e-12!86;UBERON:0007284!7.57e-12!86;UBERON:0003056!3.34e-11!61;UBERON:0000153!5.55e-11!129;UBERON:0007811!5.55e-11!129;UBERON:0001869!6.54e-11!32;UBERON:0000033!2.28e-09!123;UBERON:0002619!3.76e-09!22;UBERON:0000924!4.96e-09!173;UBERON:0006601!4.96e-09!173;UBERON:0000956!5.84e-09!25;UBERON:0000203!5.84e-09!25;UBERON:0004121!6.81e-09!169;UBERON:0001950!1.30e-08!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.00e-11;41!UBERON:0001890;9.00e-11;41!UBERON:0000073;2.28e-10;53!UBERON:0002616;2.28e-10;53!UBERON:0002791;2.74e-10;32!UBERON:0003528;3.11e-10;34!UBERON:0002020;3.11e-10;34!UBERON:0001893;5.11e-10;34!UBERON:0001869;1.27e-09;32!UBERON:0002619;3.64e-09;22!UBERON:0000956;8.29e-09;25!UBERON:0000203;8.29e-09;25!UBERON:0001950;1.57e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.11e-18,56;UBERON:0005068,2.11e-18,56;UBERON:0006241,2.11e-18,56;UBERON:0007135,2.11e-18,56;UBERON:0001017,8.38e-18,81;UBERON:0000073,3.24e-17,53;UBERON:0002616,3.24e-17,53;UBERON:0001016,5.31e-17,89;UBERON:0000955,2.65e-15,68;UBERON:0006238,2.65e-15,68;UBERON:0002780,4.23e-15,41;UBERON:0001890,4.23e-15,41;UBERON:0003080,4.23e-15,41;UBERON:0006240,4.23e-15,41;UBERON:0002346,7.05e-14,86;UBERON:0003075,8.56e-14,82;UBERON:0007284,8.56e-14,82;UBERON:0007023,1.75e-12,114;UBERON:0001893,3.14e-12,34;UBERON:0003056,3.42e-12,61;UBERON:0003528,3.44e-12,34;UBERON:0002020,3.44e-12,34;UBERON:0002791,9.24e-12,32;UBERON:0001869,4.15e-11,32;UBERON:0010371,4.17e-10,104;UBERON:0004121,1.21e-09,171;UBERON:0000924,1.21e-09,171;UBERON:0006601,1.21e-09,171;UBERON:0002619,1.54e-09,22;UBERON:0000956,4.65e-09,25;UBERON:0000203,4.65e-09,25;UBERON:0001950,5.67e-09,20;UBERON:0010314,5.61e-07,132 | |||
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| |||
|short_description=p2@DSE | |||
}} |
Revision as of 13:31, 22 January 2014
Short description: | p2@DSE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DSE_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000448740, ENST00000540275, uc011ebf.1_5end |
EntrezGene: | DSE |
HGNC: | 21144 |
UniProt: | B7Z1T3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.59e-10 | 53 |
common lymphoid progenitor | 1.59e-10 | 53 |
lymphoid lineage restricted progenitor cell | 3.99e-10 | 52 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.11e-18 | 56 |
neural rod | 2.11e-18 | 56 |
future spinal cord | 2.11e-18 | 56 |
neural keel | 2.11e-18 | 56 |
central nervous system | 8.38e-18 | 81 |
regional part of nervous system | 3.24e-17 | 53 |
regional part of brain | 3.24e-17 | 53 |
nervous system | 5.31e-17 | 89 |
brain | 2.65e-15 | 68 |
future brain | 2.65e-15 | 68 |
regional part of forebrain | 4.23e-15 | 41 |
forebrain | 4.23e-15 | 41 |
anterior neural tube | 4.23e-15 | 41 |
future forebrain | 4.23e-15 | 41 |
neurectoderm | 7.05e-14 | 86 |
neural plate | 8.56e-14 | 82 |
presumptive neural plate | 8.56e-14 | 82 |
adult organism | 1.75e-12 | 114 |
telencephalon | 3.14e-12 | 34 |
pre-chordal neural plate | 3.42e-12 | 61 |
brain grey matter | 3.44e-12 | 34 |
gray matter | 3.44e-12 | 34 |
regional part of telencephalon | 9.24e-12 | 32 |
cerebral hemisphere | 4.15e-11 | 32 |
ecto-epithelium | 4.17e-10 | 104 |
ectoderm-derived structure | 1.21e-09 | 171 |
ectoderm | 1.21e-09 | 171 |
presumptive ectoderm | 1.21e-09 | 171 |
regional part of cerebral cortex | 1.54e-09 | 22 |
cerebral cortex | 4.65e-09 | 25 |
pallium | 4.65e-09 | 25 |
neocortex | 5.67e-09 | 20 |
structure with developmental contribution from neural crest | 5.61e-07 | 132 |