FFCP PHASE1:Mm9::chr18:47528534..47528550,-: Difference between revisions
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{{FFCP|EntrezGene=20358|HGNC=|MCL_coexpression_id=3146|UniProt=|association_with_transcript=-10bp_to_ENSMUST00000151382_5end|description=CAGE_peak_4_at_Sema6a_5end|id=chr18:47528534..47528550,-|ontology_enrichment_celltype=CL:0000540!3.60e-09!33;CL:0000047!3.60e-09!33;CL:0000031!3.60e-09!33;CL:0000404!3.60e-09!33;CL:0000117!3.07e-08!23;CL:0000337!3.07e-08!23;CL:0000221!3.26e-08!44;CL:0000133!3.26e-08!44;CL:0002319!4.45e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,2.98e-09,33;CL:0000047,2.98e-09,33;CL:0000031,2.98e-09,33;CL:0000404,2.98e-09,33;CL:0000117,2.60e-08,23;CL:0000337,2.60e-08,23;CL:0000221,2.76e-08,44;CL:0000133,2.76e-08,44;CL:0002319,3.79e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!4.02e-13!333;UBERON:0004121!6.07e-13!102;UBERON:0000924!6.07e-13!102;UBERON:0006601!6.07e-13!102;UBERON:0001017!4.73e-12!73;UBERON:0005743!4.73e-12!73;UBERON:0000073!1.28e-11!75;UBERON:0001016!1.28e-11!75;UBERON:0000922!2.96e-10!328;UBERON:0000033!2.17e-08!63;UBERON:0002346!2.27e-08!71;UBERON:0003075!2.27e-08!71;UBERON:0007284!2.27e-08!71;UBERON:0001049!1.99e-07!52;UBERON:0005068!1.99e-07!52;UBERON:0006241!1.99e-07!52;UBERON:0007135!1.99e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.10e-14,95;UBERON:0000924,3.10e-14,95;UBERON:0006601,3.10e-14,95;UBERON:0001017,5.24e-12,73;UBERON:0001016,1.42e-11,75;UBERON:0010371,7.70e-11,73;UBERON:0002346,9.45e-10,64;UBERON:0003075,9.45e-10,64;UBERON:0007284,9.45e-10,64;UBERON:0000922,3.96e-09,320;UBERON:0000073,3.01e-08,54;UBERON:0001049,2.35e-07,52;UBERON:0005068,2.35e-07,52;UBERON:0006241,2.35e-07,52;UBERON:0007135,2.35e-07,52|phase1_expression=5.76535849577258,3.48975407639361,3.18499467572675,1.81478526784098,0,1.51091344720701,0.700837921786577,0,0,0,0,0,0,0,0,0.607425802169478,0,0,0,0,4.25216450755349,0,0,1.59992422793407,1.37645568640302,1.14846392823004,0.430761996159075,0.861884930743556,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0,0.204169356262369,0,0,0,0,0,0,2.14024590558481,1.72340783073175,4.77221555620372,1.56478268869608,3.70642765846759,4.83309602015838,4.6663175777828,2.93971485413261,4.31257693094915,0,0,0,0.514518872071894,1.43266719969378,0,16.1853168687678,20.1016572123373,21.5502677192101,0.677689064138264,0,0,0,0,2.69640099466564,7.30014780110954,3.62913643079672,4.45519596494579,3.99617426567626,15.996455126613,20.9825113904033,3.67472397644862,2.20444583341944,6.43453150627015,13.2139057199266,8.81042632787795,7.37311359629969,12.924856197559,9.14876436024097,10.939180781692,6.14202597803038,3.93933827022176,3.81995619442025,17.9723437138937,14.3795397607094,10.4383689662168,1.74170244666323,3.32514864469856,25.7979394944493,3.44169550792555,0,0,2.59910566979068,3.58421509677868,1.40444420131752,0,0,0,5.21120653173718,0,0,0,0.432982082022428,0,0.505524445014783,1.48439043634778,5.69663344023778,1.33597925158342,2.94925055502431,2.43572382649713,1.84492397804847,2.86373017049983,2.4693628498498,2.89033160058254,1.48316980640624,5.35017620603673,0,3.72063754879041,2.42925670306433,1.45462575940567,3.72783522436244,3.22058876712702,7.74952815209784,2.81002760729451,0,0,0,8.23848516726525,1.83000241127451,4.90051973240171,2.9550134432687,3.06858548796397,7.06479351502504,7.94982189032012,3.86989582631202,1.99051152976149,0.252722758433675,2.73574412652416,8.84819012146385,3.67843367093557,8.64298223065676,6.48030716693575,7.27990540919208,9.22418786050918,8.24575176125614,7.50239775143145,5.6047678162539,14.9393803332577,19.7065259063623,11.1789823538063,12.5121262151519,6.268538997399,7.20237477427802,7.36426787228425,0,0.257347907114715,0,2.07125772535502,3.28336483973535,1.62055855314913,1.65721314909647,3.54175617145327,2.00547246753592,1.16266972375204,1.60964040839772,1.86824547787471,2.46839774870221,3.94001913789829,6.08016071593918,4.82459958503597,3.73235195994786,5.90508242545636,4.20579897128254,9.2614151141356,1.98251269790279,2.3800550999719,6.82522401712749,7.66381017139447,6.70110798874885,4.23535401709019,4.89231696458715,3.42406127002606,3.32170343081158,5.59976446061637,4.27269854960458,5.57078121715222,3.8992817423824,5.39291645192533,3.02593269824572,2.38969527905241,4.55202962287396,5.02693455482807,6.76246414038483,5.09128319613286,5.43066964069352,4.1380133735288,5.56481526693464,2.06654207171443,2.19798218977925,2.09775178667061,2.96452627087149,1.16791574001266,0.982794975566015,0.899448449539415,0.811440485554012,1.68824011826692,2.03700681425136,2.87696137450811,2.10775794807546,1.92192989231657,4.31304619582064,2.60498663367952,4.05648975048929,2.02063102357689,2.33216637578486,2.41221760681684,12.3784637411625,3.7898282354097,3.91115943460862,3.90413697282933,5.39787571063555,4.35516269348721,5.95109102215034,10.9274842800367,11.9802709520705,11.5161638617363,11.9591076493115,15.4031515832794,11.7425787668809,8.82359257347221,0,0,0.983528546038072,2.20749397043786,6.42202359951168,10.4318401067061,0,3.28212205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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20358 | |||
|HGNC= | |||
|MCL_coexpression_id=3146 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_ENSMUST00000151382_5end | |||
|cluster_id=chr18:47528534..47528550,- | |||
|description=CAGE_peak_4_at_Sema6a_5end | |||
|id=chr18:47528534..47528550,- | |||
|ontology_enrichment_celltype=CL:0000540!3.60e-09!33;CL:0000047!3.60e-09!33;CL:0000031!3.60e-09!33;CL:0000404!3.60e-09!33;CL:0000117!3.07e-08!23;CL:0000337!3.07e-08!23;CL:0000221!3.26e-08!44;CL:0000133!3.26e-08!44;CL:0002319!4.45e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.98e-09,33;CL:0000047,2.98e-09,33;CL:0000031,2.98e-09,33;CL:0000404,2.98e-09,33;CL:0000117,2.60e-08,23;CL:0000337,2.60e-08,23;CL:0000221,2.76e-08,44;CL:0000133,2.76e-08,44;CL:0002319,3.79e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.02e-13!333;UBERON:0004121!6.07e-13!102;UBERON:0000924!6.07e-13!102;UBERON:0006601!6.07e-13!102;UBERON:0001017!4.73e-12!73;UBERON:0005743!4.73e-12!73;UBERON:0000073!1.28e-11!75;UBERON:0001016!1.28e-11!75;UBERON:0000922!2.96e-10!328;UBERON:0000033!2.17e-08!63;UBERON:0002346!2.27e-08!71;UBERON:0003075!2.27e-08!71;UBERON:0007284!2.27e-08!71;UBERON:0001049!1.99e-07!52;UBERON:0005068!1.99e-07!52;UBERON:0006241!1.99e-07!52;UBERON:0007135!1.99e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.10e-14,95;UBERON:0000924,3.10e-14,95;UBERON:0006601,3.10e-14,95;UBERON:0001017,5.24e-12,73;UBERON:0001016,1.42e-11,75;UBERON:0010371,7.70e-11,73;UBERON:0002346,9.45e-10,64;UBERON:0003075,9.45e-10,64;UBERON:0007284,9.45e-10,64;UBERON:0000922,3.96e-09,320;UBERON:0000073,3.01e-08,54;UBERON:0001049,2.35e-07,52;UBERON:0005068,2.35e-07,52;UBERON:0006241,2.35e-07,52;UBERON:0007135,2.35e-07,52 | |||
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| |||
|short_description=p4@Sema6a | |||
}} |
Revision as of 20:28, 5 August 2015
Short description: | p4@Sema6a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sema6a_5end |
Coexpression cluster: | MCL_coexpression_mm9:3146 |
Association with transcript: | -10bp_to_ENSMUST00000151382_5end |
EntrezGene: | 20358 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.98e-09 | 33 |
neuronal stem cell | 2.98e-09 | 33 |
neuroblast | 2.98e-09 | 33 |
electrically signaling cell | 2.98e-09 | 33 |
CNS neuron (sensu Vertebrata) | 2.60e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.60e-08 | 23 |
ectodermal cell | 2.76e-08 | 44 |
neurectodermal cell | 2.76e-08 | 44 |
neural cell | 3.79e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.10e-14 | 95 |
ectoderm | 3.10e-14 | 95 |
presumptive ectoderm | 3.10e-14 | 95 |
central nervous system | 5.24e-12 | 73 |
nervous system | 1.42e-11 | 75 |
ecto-epithelium | 7.70e-11 | 73 |
neurectoderm | 9.45e-10 | 64 |
neural plate | 9.45e-10 | 64 |
presumptive neural plate | 9.45e-10 | 64 |
embryo | 3.96e-09 | 320 |
regional part of nervous system | 3.01e-08 | 54 |
neural tube | 2.35e-07 | 52 |
neural rod | 2.35e-07 | 52 |
future spinal cord | 2.35e-07 | 52 |
neural keel | 2.35e-07 | 52 |