FFCP PHASE1:Hg19::chr5:32174338..32174367,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64083 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15452 | |||
|TSSclassifier=strong | |||
|UniProt=D6REM1 | |||
|association_with_transcript=40bp_to_ENST00000503610_5end | |||
|description=CAGE_peak_2_at_GOLPH3_5end | |||
|id=chr5:32174338..32174367,- | |||
|ontology_enrichment_celltype=CL:0000557!1.13e-18!71;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0000860!1.87e-17!45;CL:0000766!2.18e-17!76;CL:0002009!2.62e-17!65;CL:0002057!9.57e-17!42;CL:0000839!1.91e-16!70;CL:0000048!7.97e-14!430;CL:0000034!1.71e-13!444;CL:0000134!8.34e-13!358;CL:0000723!1.11e-12!436;CL:0000763!5.92e-12!112;CL:0000049!5.92e-12!112;CL:0002320!1.07e-11!365;CL:0000012!2.89e-10!682;CL:0000548!2.38e-09!679;CL:0000004!2.38e-09!679;CL:0000255!2.38e-09!679;CL:0000063!7.11e-09!578;CL:0000219!7.52e-08!390;CL:0002031!7.59e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.89e-15;33!CL:0002057;8.89e-15;33!CL:0000473;3.54e-12;39!CL:0000234;3.54e-12;39!CL:0000576;1.17e-10;48!CL:0000766;1.87e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.30e-17,67;CL:0000860,8.54e-17,42;CL:0002057,8.54e-17,42;CL:0002194,1.51e-16,59;CL:0000576,1.51e-16,59;CL:0000040,1.51e-16,59;CL:0000559,1.51e-16,59;CL:0000766,2.03e-16,72;CL:0002009,2.95e-16,61;CL:0000473,5.15e-16,48;CL:0000234,5.15e-16,48;CL:0000839,1.56e-15,66;CL:0000048,1.17e-13,427;CL:0000034,2.79e-13,441;CL:0000134,1.75e-12,354;CL:0000723,1.78e-12,433;CL:0002320,2.26e-11,361;CL:0000763,3.24e-11,108;CL:0000049,3.24e-11,108;CL:0000219,1.39e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.93e-20!80;UBERON:0001474!1.01e-19!86;UBERON:0002405!1.52e-17!115;UBERON:0002390!2.78e-16!102;UBERON:0003061!2.78e-16!102;UBERON:0004765!1.88e-15!101;UBERON:0001434!1.88e-15!101;UBERON:0002193!1.88e-14!112;UBERON:0000926!3.13e-12!448;UBERON:0004120!3.13e-12!448;UBERON:0006603!3.13e-12!448;UBERON:0002204!3.96e-12!167;UBERON:0002384!3.61e-11!375;UBERON:0003081!3.64e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.28e-19,76;UBERON:0001474,1.18e-18,82;UBERON:0002390,2.99e-15,98;UBERON:0003061,2.99e-15,98;UBERON:0004765,3.36e-15,90;UBERON:0002405,2.48e-14,93;UBERON:0001434,1.54e-13,100;UBERON:0002193,2.18e-13,108;UBERON:0002384,7.50e-11,371;UBERON:0002204,8.13e-11,167;UBERON:0000926,1.26e-08,315;UBERON:0004120,1.26e-08,315;UBERON:0006603,1.26e-08,315;UBERON:0003081,5.92e-08,203 | |||
|phase1_expression=7.44881355009282,6.85121676451146,7.18867460889453,8.00586386825043,3.12872766099101,5.23403114460221,7.59899634504932,5.68547886084148,1.82829939739887,3.68600904752263,2.09340350391728,1.74753097704138,2.90143676051299,2.35156070624089,1.32558950291166,0.672325146451775,1.20538905604795,3.65155045193687,1.95173119516203,1.23121058076788,1.42800483870977,0.626909442956176,1.14494394852423,1.09499540058307,1.88313959392204,1.29902789771517,1.80621296789881,1.65292640758726,1.96682138424452,3.83829398097213,3.2511385896376,0.919421224478927,0,1.47901604066715,1.16200800870452,0.995184627411951,8.22081230137572,2.21598163412751,3.40925560699241,3.47217393145363,2.46307021663917,1.6194683300949,3.60605794687861,3.63495596948912,7.17964293008738,6.54976965207104,6.97287110717054,5.75635043230556,7.12324653058738,7.76769459269806,4.86705342405291,8.27687804610048,8.27389633767885,5.16387746867061,5.41705946377367,6.21199720490596,9.5517152520246,5.39336362668203,9.79468455586888,11.2325159476633,12.1474053901818,11.2149442063483,5.98390972864896,6.39337125799041,7.83564944297177,10.7803192691317,10.5879782329248,9.54744927975624,4.69334626578181,6.95004303056373,10.2917915447673,9.57521853567668,9.17740923578565,4.01385043992689,3.18906449947565,2.93522103711726,3.48218756554135,2.85336096398862,2.57160938715328,5.41524213108372,4.17725022118089,5.11459630540975,0,1.63841583378639,0,1.28019066769952,0,1.72425731986345,2.64417949113945,0.954053754535364,1.70763890732835,2.93618594685469,1.91136614062614,14.5388461436928,15.694239763483,3.16060901730092,2.55722701147983,2.35806457649499,5.14003747498773,0.83593247695339,2.28145586643513,1.4203434172042,0,3.00808233589969,1.47302953737419,3.76607620792156,2.16643091012012,1.5370958367081,2.47112760363769,1.47994114143309,1.93445012450094,2.60822777161547,1.77943875794473,2.1403266247177,0,2.15287751125376,3.44898444241729,2.06176467289578,1.01207876807801,1.59282707162048,1.30216690771284,0.950452044448374,0.903450714466637,0.895906278080929,1.24930726552346,1.18388626022008,0,4.43534835094411,6.15112450302067,3.18613688542158,4.87613732627923,5.36560687762909,1.91793842765295,2.1686349143074,4.51204119572301,2.462390822334,7.15757352345989,6.8128881842369,1.32348744029695,1.99556457716308,1.31752178539689,2.22664428346111,2.5500670180478,1.11235332835329,11.0346113842592,9.0547463395619,6.91381394698099,2.62339686735876,0.571994910780128,1.11437250398869,2.38514888840046,2.58070378531837,2.42998351125316,2.82653970962005,1.25849830862972,2.47606237746061,1.46296476575767,2.32575083252396,2.49036383880697,2.34304428935269,0.805658634218294,0.760272105718513,1.22031028774085,1.47065232138347,4.86085168729056,2.14319347881791,1.57170560838319,1.57656072676651,0,1.89853131913626,2.5648244150257,2.63560834872127,7.75560528296651,0.436094052142534,4.47274756525787,2.78587125662075,1.05927344650575,1.14734648299525,2.4826786753885,1.68203280042692,4.2699598291882,3.20667812942308,2.17847724779836,2.69421344139376,2.7788523529288,3.93529311876822,2.30470369792,2.81185718200556,2.49728061464256,3.4228309292667,6.27684458317565,1.17434498643765,0.809364721840658,1.26405726032024,2.24569588380383,1.22834317311768,2.6864703105699,1.18800285728205,3.4617370098998,0.910161361938026,0.718618141816238,1.34668891163253,1.7516592782075,2.49357703935765,2.19488810440419,3.98434134538726,3.90618953157152,3.85669422744072,1.79389635688862,3.20336083227851,4.23863802319124,3.00091096084402,2.57631323096097,2.57640540045629,3.7223371266318,3.20675031258406,5.55390929418832,3.02920529092937,4.23429533754577,5.17267381820198,2.84007674013291,2.51880245569101,2.7129694769678,3.47869535693934,2.18196896472668,3.15485054927904,2.19552671033272,2.78312513475119,1.85910308591229,1.65857688024593,3.78481276313443,1.09493207722749,4.69348596989448,2.57296375277154,2.76269842704961,5.57241513638375,2.88751792667834,6.98010120235079,8.93498857413939,10.8454963447567,8.60292987312673,8.06153943141903,10.2026366217772,6.60673409984806,6.86775127938711,6.92544882503503,3.69077727312324,7.01208869017229,3.2925920906512,1.47008711385542,15.2106041786197,40.2959158837827,7.68026878685825,1.32438929824395,3.32068784066407,1.20097467208968,2.30475599358114,0,0.904760751704678,0.555530670951178,1.62904152655162,3.11980435583874,0,0,2.93521735589554,2.45422961193825,3.24089858803628,1.71228737011138,3.1608175918371,3.43394464837949,2.21595305478658,6.78612368903789,4.01304138179566,1.87467667973554,1.17587489739202,0.850650583454319,2.86587272649115,2.3250715081117,1.53353071666084,21.1845192295256,9.77337617546809,3.31724984865235,1.58531948758658,3.28230326908588,1.33345578013555,1.52795370223311,2.34434894420094,0,0.719792448923265,1.8020583470635,0.285826432630578,1.68196626518041,1.74384027533312,1.466765716419,5.55868377758444,3.57656445851882,3.381211010224,1.59562869950922,0,2.31486636835928,7.09245660116391,2.39779961114489,2.7165818795048,3.25572963234866,0.823240336780769,2.28015329005615,3.55391948742546,0,1.80863626235752,0.871533458600294,2.89921674427965,1.2162378064119,2.00902836572851,4.21667878966063,3.59437283237374,5.7430967917057,0,5.64647096003559,2.4657158706046,4.29746311775749,1.45710687191585,5.51686128565396,6.46882724578552,4.49200626979119,1.77866236955724,6.50699269288109,0,0.670065061337395,2.55175500661265,3.74503511973591,0,1.65766205374414,1.96306386750624,1.50051156317903,1.89885516589815,3.74347550755453,2.3195768543631,2.52323864054295,2.10854546986884,5.71797589482666,4.5481500811197,4.1389228517002,4.64957918974806,5.16233671916769,2.17209036170207,0.783204629850962,1.02943027143257,2.48121631347465,1.94142780736755,3.62873696531711,2.12189300012382,1.66435439510497,1.20956117331872,8.68377327365719,3.37616341233737,5.3325417942284,4.86928767171664,6.14048698880044,4.98647155545183,4.45254199334973,4.93471020168498,7.99027763909072,3.6135948646076,5.19254429183621,3.25389059687886,7.25156697549733,3.60911646545913,1.65745780084613,2.52591785962135,2.1850940160806,3.54035920390445,0.902399225814824,1.07821471946181,0.784349769176855,1.46139224653261,1.68882606228601,4.54933536283586,1.02056223165909,3.88648648983851,3.08454505380579,1.35473218771926,1.00337954770971,0.764628819135115,1.66215201785745,2.23874754722178,0,0.261435451024901,0.512900250232778,1.31205858279882,1.62689197332152,2.88514832613622,1.37354197227515,2.55779449753823,1.14853107599234,1.95018073810956,0,1.35339005608971,2.46477787383431,2.14905144616581,1.37836572484531,1.50388342815583,2.46528379654188,2.30111894023472,3.47224939022276,3.96683796866347,3.84380134730212,1.02090169995667,2.6301023022443,3.71876439437829,1.88887408098384,1.3940745403212,2.46426864140871,1.59691809095107,1.73986598415015,4.07713282028624,4.8662461492277,2.232950216158,4.74569137078089,4.19386426632415,1.02359116524534,3.42351190427136,5.09125196681499,2.35484592059769,1.79872457583315,0.823611089208164,1.17812402345686,4.85237955775958,9.5106192703805,1.26377536871694,2.92580243453754,5.60541026151954,9.50851320810799,2.72999822815972,1.41405431953713,9.04064932961942,2.2054613741845,2.65375590096488,5.69986150829892,5.20897980840019,3.27947376023316,3.44947640836597,2.478587984798,1.97186921772569,1.14729081763241,1.96498082026242,3.5667105148125,1.77380532035299,3.58882980006029,2.96365403663912,3.03578539012572,3.84928192269481,1.05844323998063,3.35151137767894,2.17781969722645,3.01260162485693,0.43050537267123,0,0,1.83778720165568,0.507447609232169,1.52927441428475,3.98753031021914,2.1440859791201,1.23408681925858,1.29694662238543,3.24018862342869,3.17250070517708,1.81600920916704,1.92495971052672,5.14584453560167,0.371606350251437,1.00988449083511,1.13826949357463,0.478278818186467,2.3949524571938,3.4470966623826,4.02179807175377,1.94773164164733,1.96558024679421,1.59764275323235,2.50687833236837,2.50634477090067,4.06300266723848,3.69352572738509,2.82519590067467,10.6461559422582,1.71752672377882,3.99412993600995,2.23676107892416,6.17341824334061,1.9538809540204,4.17609260842864,1.23087398947712,0.540911356951966,3.99686361597384,4.22961015263549,1.68426486367398,3.51619630252546,1.21360521749513,0.66866030566487,1.42068073403207,1.90995587790152,1.18785872333055,0,0.994147647766298,0.562677665642051,2.22617410045812,4.77931235257603,0.844501632511974,1.9924798825107,5.52567831062295,4.03092396566842,2.14764233254525,3.81562896929315,5.90975216557434,3.86433909933505,7.8769316857268,5.11572370226872,1.7755813014648,0,6.66821940867821,1.93866549219044,0.834912883456661,0,4.16684417736373,2.18649999990489,1.44999915086959,2.16207551742449,2.2882828526349,6.61885508950222,1.03423011972439,0.583209226766509,0.868124974666461,0.885741385813839,0.723578631752448,0,1.21637185924347,0.295547618953547,2.63262476584767,3.37709236908869,3.90386483980089,1.53900517007594,8.20382802098409,4.6112780877612,9.15527972979676,3.36806852958225,3.19001159731919,2.65633020865401,3.19820865611181,0,6.12222999940597,1.66211681900156,1.1279783030859,1.76456280885966,2.3495022176618,0.75901493089674,2.06617552674492,2.3209787098083,4.08082020397869,4.66465135732005,0.649165919226273,1.99052386215701,2.12298154808014,1.83309043480088,15.1225775627117,14.3334169177943,15.6632924258183,0.808813595768125,2.40773294189637,0.702793337176017,1.094728735294,2.15231080825299,3.3989253134773,2.76209081994573,1.20990716048664,0.30607276163049,2.71702292402498,7.51617097072463,2.17745201934219,0.664653872707185,1.65495977937749,2.19753042885058,3.58417289318877,4.55375273647668,1.10939738410511,2.95051555169723,2.44980993535944,6.7906181132714,2.97035336011451,0.859930162358083,3.57998425769615,4.89698424477443,4.4342346808733,2.5217144286989,3.26547668758551,1.58186518546373,1.37041924646751,0.993573058514948,0.886351143382302,4.69323318563527,3.92778219232515,3.84215390530835,1.9980960958213,3.31407959454444,3.77970767347522,2.57392496792947,1.4405479798815,2.73355578243952,2.59263438078475,1.35904206073614,2.61507115780833,2.14196257036276,1.73370353940911,0.600420288709789,0.958337652243951,35.7690446587523,0.859530882839914,7.36084591982081,4.18923601908381,0.916641696046735,6.46085722119133,5.79069101447074,2.14613024068285,2.67805748930247,2.35142153703542,3.96329871896644,2.32991899054908,3.93915911536118,3.46146605200899,4.11161617510528,1.77169466726548,3.55627994676295,0.795229689809303,1.22583065500418,3.3758161177654,2.47570985875021,3.32352270423348,2.92466059016951,2.32140586367385,1.03274246318642,5.03152031398899,3.86147965766071,3.25218446436988,2.74560874950457,1.25501137532991,2.87872795979168,0.714695326373367,0,4.32256514013075,1.08599920350743,4.32110745600634,2.28611152076586,3.59190574687462,1.80603545648546,1.70388021785422,3.39936274560377,14.3621189004521,1.32506888912221,2.06852730178481,1.45455861916959,1.88195521672762,2.11444506695002,2.24253566392159,4.55892484789031,4.97086866416635,2.48083010905975,17.1922119751212,2.55764456599881,4.46838880439127,9.24830265728106,4.2617281983859,3.36980134439808,3.93447156851765,3.14108192500469,0.886068179966986,0.732157589411779,1.1267183763585,0.573409195690071,1.77486482458964,1.1177352529449,1.52183498429854,0.874862855734746,3.63957882099955,0.856396000634902,2.35265819698172,0.936669811613763,3.04334160082733,5.52242770681434,4.67426619694449,2.21922344601045,2.46223906857616,3.77351852628863,4.44905610798268,2.51724075236616,3.17584939902802,2.02068360757615,3.84423389973048,2.54874827461924,1.34940933649081,5.12367757691656,4.56176828624941,5.0509925766019,3.1304703708704,2.25386413495828,5.71207818253193,1.22061219961398,3.27327586564607,1.50374779859484,0.928067519756987,3.98095888698616,1.60011105865261,1.71697852591396,3.36749488765919,3.78554694685953,1.34833881285112,3.43106546199881,2.87093721161733,1.36023555307363,1.15761237161917,6.36315431716816,4.2981321859557,0.617602894321944,2.19284049578707,3.18040462702586,5.78742114812744,1.35153952522458,2.56241518587947,3.79973375904318,2.73473960559644,1.24432592536558,1.16916185303633,1.0629187225069,0.327130788511688,1.63804924423206,1.2288645437686,4.43755459053117,7.39953364663241,1.60037594541211,5.85530930846773,2.27006381426734,2.94569520402945,0.279759015438889,1.24415452006595,1.15104934173287,1.1860729253635,0.786329709279482,0.655257829152084,0.678930119816101,0.212574920101683,0.371807292777007,0,4.77006525980128,0.867479195013787,3.20228299314188,5.99549104274163,3.062454773532,1.28458450192919,1.41696576325585,2.07524016774297,0.615349092722265,0.504143392443436,0.622415272177961,0.807378228159255,1.42769420259154,2.74813611802872,2.00548529691159,2.56800037930351,6.3539116382686,4.95796724107317,2.0710797781803,2.3869946653953,1.80504788038217,1.0085253435176,5.47059807863165,6.54766736203556,3.11166643269184,3.99211432786022,1.82351478469666,0.781078098613847,1.03343398250592,1.71222687523548,0,3.28954660114309,0.992422356778588,0,4.47168496738583,1.60710550763486,0,3.64179362541979,3.18727067891817,2.57236873471653,2.41991373867136,0.857440047187092,1.42736439251347,1.24968269769413,4.25497827182286,1.33477682270483,2.66876515691748,0.314231179832004,1.96190514319652,0,3.23891386827932,0,2.35872595782966,1.73814972905999,1.51113852978563,1.56472445072321,5.61197955311177,1.24329698497822,0.85359238546975,0.691259661814092,0.860454717640555,1.30165200803622,1.10777426186905,2.54032230114557,6.4149923192334,3.1020638566432,1.91107787795487,4.13865097651832,1.86485443868962,9.14384437367021,2.58971534875158,1.84793052341245,3.4794432940146,2.4285549652957,11.4630337096432,1.79055697645231,0.237840181555137,3.27543637912984,0.439762066981716,5.43466236840025,3.55001127296545,3.27839340755936,7.05475944542284,1.96118657403124,2.59244201811789,1.57046773691956,2.37637120261669,1.2679671827502,3.90832363781979,2.72553362141575,2.8361470708374,0.799529247399431,4.28529452653578,4.2347384605883,5.13544746810677,2.19100916473955,4.12856355064087,1.29005624836306,0.473314686579554,0.815897882290976,0,2.1161073620616,1.11598505450025,0.924351257262837,1.73050624849516,1.26166424835079,2.4038425832013,3.04076402427449,3.87557553019531,0.801652215796681,2.02168778976659,1.75495277504663,2.1218035501107,1.07185652062471,0.829169439458779,1.44806194206653,2.98527574661373,2.61870874610114,0.904244737704086,1.24149428591716,0.784923038064294,2.73682780596109,2.82964064541507,2.61260097476354,2.39563310759697,3.16554649168561,5.37916540445073,6.32054677437425,2.93051766999508,1.60091018816573,0,1.52702843581198,2.34640942403454,1.1001729976458,2.84827324821017,1.99727032255654,2.01273793591026,1.60284246151616 | |||
|short_description=p2@GOLPH3 | |||
}} |
Revision as of 04:55, 22 January 2014
Short description: | p2@GOLPH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GOLPH3_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_ENST00000503610_5end |
EntrezGene: | GOLPH3 |
HGNC: | 15452 |
UniProt: | D6REM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.30e-17 | 67 |
classical monocyte | 8.54e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.54e-17 | 42 |
monopoietic cell | 1.51e-16 | 59 |
monocyte | 1.51e-16 | 59 |
monoblast | 1.51e-16 | 59 |
promonocyte | 1.51e-16 | 59 |
myeloid leukocyte | 2.03e-16 | 72 |
macrophage dendritic cell progenitor | 2.95e-16 | 61 |
defensive cell | 5.15e-16 | 48 |
phagocyte | 5.15e-16 | 48 |
myeloid lineage restricted progenitor cell | 1.56e-15 | 66 |
multi fate stem cell | 1.17e-13 | 427 |
stem cell | 2.79e-13 | 441 |
mesenchymal cell | 1.75e-12 | 354 |
somatic stem cell | 1.78e-12 | 433 |
connective tissue cell | 2.26e-11 | 361 |
myeloid cell | 3.24e-11 | 108 |
common myeloid progenitor | 3.24e-11 | 108 |
motile cell | 1.39e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.28e-19 | 76 |
bone element | 1.18e-18 | 82 |
hematopoietic system | 2.99e-15 | 98 |
blood island | 2.99e-15 | 98 |
skeletal element | 3.36e-15 | 90 |
immune system | 2.48e-14 | 93 |
skeletal system | 1.54e-13 | 100 |
hemolymphoid system | 2.18e-13 | 108 |
connective tissue | 7.50e-11 | 371 |
musculoskeletal system | 8.13e-11 | 167 |
mesoderm | 1.26e-08 | 315 |
mesoderm-derived structure | 1.26e-08 | 315 |
presumptive mesoderm | 1.26e-08 | 315 |
lateral plate mesoderm | 5.92e-08 | 203 |