FFCP PHASE1:Mm9::chr17:75577989..75578000,+: Difference between revisions
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{{FFCP|EntrezGene=268977|HGNC=|MCL_coexpression_id=230|UniProt=Q8CG19,B1B1E2|association_with_transcript=-149bp_to_ENSMUST00000112516,ENSMUST00000135447,NM_206958_5end|description=CAGE_peak_11_at_Ltbp1_5end|id=chr17:75577989..75578000,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000192,7.07e-16,3;CL:0000359,7.07e-16,3;CL:0002539,7.07e-16,3;CL:0000514,7.07e-16,3;CL:0000680,3.55e-08,6;CL:0000187,3.55e-08,6;CL:0000056,3.55e-08,6;CL:0000222,4.57e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005178!1.19e-10!17;UBERON:0005181!1.19e-10!17;UBERON:0002224!1.19e-10!17;UBERON:0000915!1.19e-10!17;UBERON:0008947!1.19e-10!17;UBERON:0003258!1.19e-10!17;UBERON:0002048!6.55e-09!14;UBERON:0000117!6.55e-09!14;UBERON:0000171!6.55e-09!14;UBERON:0000170!6.55e-09!14;UBERON:0005597!6.55e-09!14;UBERON:0000118!6.55e-09!14|ontology_enrichment_uberon_v019_2=UBERON:0000947,1.64e-20,4;UBERON:0001637,1.64e-20,4;UBERON:0004573,1.64e-20,4;UBERON:0003509,1.64e-20,4;UBERON:0004571,1.64e-20,4;UBERON:0010191,1.64e-20,4;UBERON:0004572,1.64e-20,4;UBERON:0005178,1.06e-16,17;UBERON:0005181,1.06e-16,17;UBERON:0002224,1.06e-16,17;UBERON:0000915,1.06e-16,17;UBERON:0008947,1.06e-16,17;UBERON:0003258,1.06e-16,17;UBERON:0000055,1.88e-16,5;UBERON:0007500,1.88e-16,5;UBERON:0001981,1.88e-16,5;UBERON:0002049,1.88e-16,5;UBERON:0007798,1.88e-16,5;UBERON:0004537,1.88e-16,5;UBERON:0006965,1.88e-16,5;UBERON:0002048,6.28e-16,14;UBERON:0000117,6.28e-16,14;UBERON:0000171,6.28e-16,14;UBERON:0000170,6.28e-16,14;UBERON:0005597,6.28e-16,14;UBERON:0000118,6.28e-16,14;UBERON:0001135,7.07e-16,3;UBERON:0004237,7.07e-16,3;UBERON:0004695,7.07e-16,3;UBERON:0002111,7.07e-16,3;UBERON:0004178,7.07e-16,3;UBERON:0005153,5.41e-13,17;UBERON:0005157,6.18e-11,20;UBERON:0000065,5.25e-08,41;UBERON:0001004,8.71e-08,42|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,7.30201544258348,8.41428529121971,6.60768307782054,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,1.10115880999389,0.127687338085188,0,0,0,0,0.279182999001381,0,0,0,0.284743361598206,0,0,0.151143120213571,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0.11418387971906,0.258937883647172,0,0,0.304465478312141,0,0.150722640552623,0.117588707135705,0,0.741584903203122,3.32578520915797,0,0.485300549842228,0,0,0,0,0,0.255457055208591,0,0,0,0.149790639404823,0,0,0.347648640384553,0,0,0.162241263067758,0.407357455401265,0.373220911830279,0,0.210441855886474,0,0,0.540186389416048,0.30140963567143,0.95251098811859,0,0.281105173679186,1.29351685369508,0,0.189106080167819,0.527853372491847,0,1.39023624612799,1.39300866608867,1.02891068203972,0,0,0,0,0,0,0.180062061461015,0.710234206755631,0.196764231747404,0.462801338662135,0,0.536546802799238,0.350296027101508,0.329119699826961,0.32833492815819,0.243206428637567,0.292399974850665,0.439100230582101,0.134206418760372,0,0,0,0.264450566663544,0,0.696710015581316,0.257734922644187,0.605050573870028,0,0,0,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0,0,0,0,0.203651327845314,0,0,0.126473074248515,0.295220295959204,0,0.370191491765402,0,0.333690211432188,0,0,0,0,0,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0,3.32555742299888,0.189491411770485,0.488894929326078,0.169745085775188,0.469380496577004,0.502518772325447,0.952174563544055,1.17080188714679,1.7339865851681,1.10732344824387,0.159454768657487,1.63863314715738,1.89953480052485,1.88043776155965,0,0,0,0,0,0.117211686592203,0.819674726883377,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.567760340833074,0.35613120733451,0.162886959353576,0.824850614862677,0,0,0,0,0,0.307435147943927,0,0.363533729477506,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0.49465875882444,0,0.180938774784468,0,0,0,0.370850604021019,0.170870880797853,0,0.555583582109135,0,0.136694227721025,0,0,0,0,0,0.158167996790568,0,0.432021363287205,0.627264888043406,0.436725127492355,0.674321731924103,0.578574190077352,0.785267825952089,0.388844919875379,0,0,0,0,0,0.129159823477731,0.168956125490778,0.352071715937262,0.39061315453185,0.419437377702843,0,0.288030006257865,0,0,0.308132871494482,0,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0.116876902181569,1.13365191807606,0,0,0,1.15913756419314,0.187682475451182,0.183151624267265,0.643105137237198,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0,0.399024873401031,0.170733605754134,0,0.209613162627982,0,0,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.187283014939765,0.192075457214608,0.34461281373368,0.476293691283074,0.115884325944855,0.578727661391115,0,0,0.342869252385415,0.177475806159338,0.238436189947321,0.145346416632329,0.0941093804153306,0.25384382367503,0.365855945745545,0.263069711437843,0.271608227691724,0,0.237270036248348,0.394017929502254,0,0,0.578719832943424,0.749431733813838,0.233931608445408,0.429742108096597,0.191288332068843,0.220591419119515,0|short_description=p11@Ltbp1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:268977 | |||
|HGNC= | |||
|MCL_coexpression_id=230 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CG19,uniprot:B1B1E2 | |||
|association_with_transcript=-149bp_to_ENSMUST00000112516,ENSMUST00000135447,NM_206958_5end | |||
|cluster_id=chr17:75577989..75578000,+ | |||
|description=CAGE_peak_11_at_Ltbp1_5end | |||
|id=chr17:75577989..75578000,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,7.07e-16,3;CL:0000359,7.07e-16,3;CL:0002539,7.07e-16,3;CL:0000514,7.07e-16,3;CL:0000680,3.55e-08,6;CL:0000187,3.55e-08,6;CL:0000056,3.55e-08,6;CL:0000222,4.57e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005178!1.19e-10!17;UBERON:0005181!1.19e-10!17;UBERON:0002224!1.19e-10!17;UBERON:0000915!1.19e-10!17;UBERON:0008947!1.19e-10!17;UBERON:0003258!1.19e-10!17;UBERON:0002048!6.55e-09!14;UBERON:0000117!6.55e-09!14;UBERON:0000171!6.55e-09!14;UBERON:0000170!6.55e-09!14;UBERON:0005597!6.55e-09!14;UBERON:0000118!6.55e-09!14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000947,1.64e-20,4;UBERON:0001637,1.64e-20,4;UBERON:0004573,1.64e-20,4;UBERON:0003509,1.64e-20,4;UBERON:0004571,1.64e-20,4;UBERON:0010191,1.64e-20,4;UBERON:0004572,1.64e-20,4;UBERON:0005178,1.06e-16,17;UBERON:0005181,1.06e-16,17;UBERON:0002224,1.06e-16,17;UBERON:0000915,1.06e-16,17;UBERON:0008947,1.06e-16,17;UBERON:0003258,1.06e-16,17;UBERON:0000055,1.88e-16,5;UBERON:0007500,1.88e-16,5;UBERON:0001981,1.88e-16,5;UBERON:0002049,1.88e-16,5;UBERON:0007798,1.88e-16,5;UBERON:0004537,1.88e-16,5;UBERON:0006965,1.88e-16,5;UBERON:0002048,6.28e-16,14;UBERON:0000117,6.28e-16,14;UBERON:0000171,6.28e-16,14;UBERON:0000170,6.28e-16,14;UBERON:0005597,6.28e-16,14;UBERON:0000118,6.28e-16,14;UBERON:0001135,7.07e-16,3;UBERON:0004237,7.07e-16,3;UBERON:0004695,7.07e-16,3;UBERON:0002111,7.07e-16,3;UBERON:0004178,7.07e-16,3;UBERON:0005153,5.41e-13,17;UBERON:0005157,6.18e-11,20;UBERON:0000065,5.25e-08,41;UBERON:0001004,8.71e-08,42 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,7.30201544258348,8.41428529121971,6.60768307782054,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,1.10115880999389,0.127687338085188,0,0,0,0,0.279182999001381,0,0,0,0.284743361598206,0,0,0.151143120213571,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0.11418387971906,0.258937883647172,0,0,0.304465478312141,0,0.150722640552623,0.117588707135705,0,0.741584903203122,3.32578520915797,0,0.485300549842228,0,0,0,0,0,0.255457055208591,0,0,0,0.149790639404823,0,0,0.347648640384553,0,0,0.162241263067758,0.407357455401265,0.373220911830279,0,0.210441855886474,0,0,0.540186389416048,0.30140963567143,0.95251098811859,0,0.281105173679186,1.29351685369508,0,0.189106080167819,0.527853372491847,0,1.39023624612799,1.39300866608867,1.02891068203972,0,0,0,0,0,0,0.180062061461015,0.710234206755631,0.196764231747404,0.462801338662135,0,0.536546802799238,0.350296027101508,0.329119699826961,0.32833492815819,0.243206428637567,0.292399974850665,0.439100230582101,0.134206418760372,0,0,0,0.264450566663544,0,0.696710015581316,0.257734922644187,0.605050573870028,0,0,0,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0,0,0,0,0.203651327845314,0,0,0.126473074248515,0.295220295959204,0,0.370191491765402,0,0.333690211432188,0,0,0,0,0,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0,3.32555742299888,0.189491411770485,0.488894929326078,0.169745085775188,0.469380496577004,0.502518772325447,0.952174563544055,1.17080188714679,1.7339865851681,1.10732344824387,0.159454768657487,1.63863314715738,1.89953480052485,1.88043776155965,0,0,0,0,0,0.117211686592203,0.819674726883377,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.567760340833074,0.35613120733451,0.162886959353576,0.824850614862677,0,0,0,0,0,0.307435147943927,0,0.363533729477506,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0.49465875882444,0,0.180938774784468,0,0,0,0.370850604021019,0.170870880797853,0,0.555583582109135,0,0.136694227721025,0,0,0,0,0,0.158167996790568,0,0.432021363287205,0.627264888043406,0.436725127492355,0.674321731924103,0.578574190077352,0.785267825952089,0.388844919875379,0,0,0,0,0,0.129159823477731,0.168956125490778,0.352071715937262,0.39061315453185,0.419437377702843,0,0.288030006257865,0,0,0.308132871494482,0,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0.116876902181569,1.13365191807606,0,0,0,1.15913756419314,0.187682475451182,0.183151624267265,0.643105137237198,0,0,0,0,0,0,0.755393897389701,0,0,0,0,0,0.399024873401031,0.170733605754134,0,0.209613162627982,0,0,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.187283014939765,0.192075457214608,0.34461281373368,0.476293691283074,0.115884325944855,0.578727661391115,0,0,0.342869252385415,0.177475806159338,0.238436189947321,0.145346416632329,0.0941093804153306,0.25384382367503,0.365855945745545,0.263069711437843,0.271608227691724,0,0.237270036248348,0.394017929502254,0,0,0.578719832943424,0.749431733813838,0.233931608445408,0.429742108096597,0.191288332068843,0.220591419119515,0 | |||
|short_description=p11@Ltbp1 | |||
}} |
Revision as of 08:27, 5 August 2015
Short description: | p11@Ltbp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_Ltbp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:230 |
Association with transcript: | -149bp_to_ENSMUST00000112516, ENSMUST00000135447, NM_206958_5end |
EntrezGene: | 268977 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 7.07e-16 | 3 |
vascular associated smooth muscle cell | 7.07e-16 | 3 |
aortic smooth muscle cell | 7.07e-16 | 3 |
smooth muscle myoblast | 7.07e-16 | 3 |
muscle precursor cell | 3.55e-08 | 6 |
muscle cell | 3.55e-08 | 6 |
myoblast | 3.55e-08 | 6 |
mesodermal cell | 4.57e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
aorta | 1.64e-20 | 4 |
artery | 1.64e-20 | 4 |
systemic artery | 1.64e-20 | 4 |
arterial blood vessel | 1.64e-20 | 4 |
systemic arterial system | 1.64e-20 | 4 |
aortic system | 1.64e-20 | 4 |
arterial system | 1.64e-20 | 4 |
thoracic cavity element | 1.06e-16 | 17 |
thoracic segment organ | 1.06e-16 | 17 |
thoracic cavity | 1.06e-16 | 17 |
thoracic segment of trunk | 1.06e-16 | 17 |
respiratory primordium | 1.06e-16 | 17 |
endoderm of foregut | 1.06e-16 | 17 |
vessel | 1.88e-16 | 5 |
epithelial tube open at both ends | 1.88e-16 | 5 |
blood vessel | 1.88e-16 | 5 |
vasculature | 1.88e-16 | 5 |
vascular system | 1.88e-16 | 5 |
blood vasculature | 1.88e-16 | 5 |
vascular cord | 1.88e-16 | 5 |
lung | 6.28e-16 | 14 |
respiratory tube | 6.28e-16 | 14 |
respiration organ | 6.28e-16 | 14 |
pair of lungs | 6.28e-16 | 14 |
lung primordium | 6.28e-16 | 14 |
lung bud | 6.28e-16 | 14 |
smooth muscle tissue | 7.07e-16 | 3 |
blood vessel smooth muscle | 7.07e-16 | 3 |
arterial system smooth muscle | 7.07e-16 | 3 |
artery smooth muscle tissue | 7.07e-16 | 3 |
aorta smooth muscle tissue | 7.07e-16 | 3 |
epithelial bud | 5.41e-13 | 17 |
epithelial fold | 6.18e-11 | 20 |
respiratory tract | 5.25e-08 | 41 |
respiratory system | 8.71e-08 | 42 |