FFCP PHASE1:Mm9::chr17:6106521..6106563,+: Difference between revisions
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{{FFCP|EntrezGene=68842|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000151732_5end|description=CAGE_peak_3_at_Tulp4_5end|id=chr17:6106521..6106563,+|ontology_enrichment_celltype=CL:0000540!2.09e-11!33;CL:0000047!2.09e-11!33;CL:0000031!2.09e-11!33;CL:0000404!2.09e-11!33;CL:0000117!2.11e-10!23;CL:0000337!2.11e-10!23;CL:0000393!1.51e-09!39;CL:0000211!1.51e-09!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.83e-11,33;CL:0000047,1.83e-11,33;CL:0000031,1.83e-11,33;CL:0000404,1.83e-11,33;CL:0000117,1.87e-10,23;CL:0000337,1.87e-10,23;CL:0000393,1.36e-09,39;CL:0000211,1.36e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!5.65e-18!86;UBERON:0000073!1.12e-15!75;UBERON:0001016!1.12e-15!75;UBERON:0004121!1.36e-15!102;UBERON:0000924!1.36e-15!102;UBERON:0006601!1.36e-15!102;UBERON:0000153!1.96e-15!94;UBERON:0001017!9.48e-15!73;UBERON:0005743!9.48e-15!73;UBERON:0003056!5.92e-14!49;UBERON:0000033!1.01e-13!63;UBERON:0001049!1.26e-13!52;UBERON:0005068!1.26e-13!52;UBERON:0006241!1.26e-13!52;UBERON:0007135!1.26e-13!52;UBERON:0003080!1.38e-12!40;UBERON:0000955!2.67e-12!50;UBERON:0006238!2.67e-12!50;UBERON:0002346!3.56e-12!71;UBERON:0003075!3.56e-12!71;UBERON:0007284!3.56e-12!71;UBERON:0002780!5.42e-12!39;UBERON:0001890!5.42e-12!39;UBERON:0006240!5.42e-12!39;UBERON:0002616!6.28e-12!49;UBERON:0002020!4.83e-11!34;UBERON:0002791!2.26e-09!29;UBERON:0003528!2.26e-09!29;UBERON:0001893!2.26e-09!29;UBERON:0000064!1.30e-07!99;UBERON:0000477!1.68e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.26e-19,95;UBERON:0000924,8.26e-19,95;UBERON:0006601,8.26e-19,95;UBERON:0010371,3.13e-16,73;UBERON:0001016,8.86e-16,75;UBERON:0002346,1.44e-15,64;UBERON:0003075,1.44e-15,64;UBERON:0007284,1.44e-15,64;UBERON:0001017,7.61e-15,73;UBERON:0003056,8.54e-14,49;UBERON:0000073,1.23e-13,54;UBERON:0001049,1.38e-13,52;UBERON:0005068,1.38e-13,52;UBERON:0006241,1.38e-13,52;UBERON:0007135,1.38e-13,52;UBERON:0003080,2.06e-12,40;UBERON:0002780,8.09e-12,39;UBERON:0001890,8.09e-12,39;UBERON:0006240,8.09e-12,39;UBERON:0000955,1.21e-11,47;UBERON:0006238,1.21e-11,47;UBERON:0002616,2.81e-11,46;UBERON:0002020,7.35e-11,34;UBERON:0010314,5.32e-10,92;UBERON:0003528,3.48e-09,29;UBERON:0002791,3.48e-09,29;UBERON:0001893,3.48e-09,29;UBERON:0000483,3.66e-07,174|phase1_expression=2.24208385946712,1.74487703819681,2.27499619694768,2.72217790176147,2.00358291978539,0.839396359559449,2.56973904655078,5.29405626110463,9.01047821770667,8.89445200023575,2.39705155515707,1.91453181588807,6.84802919724823,5.24522414513984,0.333109761815663,1.21485160433896,0,4.41647031501533,5.89592064504677,2.97072756258621,7.22867966284093,2.18440092641948,2.61199789138935,3.67982572424835,2.52350209173887,1.14846392823004,3.01533397311352,3.01659725760245,1.14014051673824,0.756090389279792,1.10865255327652,0.635030673459631,2.46025915033828,0,0.577703239502549,0.166234645358492,1.22501613757421,0,0,0.523523743973798,0.588231488031014,0,0,1.38486499773135,2.43304634926835,2.0190142737785,0,1.09012578190223,0.878744730937887,0.972149495371417,0.979904951377538,0,7.04686945442493,7.25362142011344,14.452033363126,2.57259436035947,2.0057340795713,1.03134418455488,7.08107613008592,11.6378015439847,10.775133859605,0,0.889294796111139,0.899899717281399,0,1.4209602298922,0,0.384218305321555,4.66603255388149,2.70011876663381,4.41682418837902,3.99911378165325,3.3130281142742,8.08439274818697,8.05101956553185,7.35375029288017,2.20231761998777,3.83062014255563,5.52983519722476,10.5509030184155,10.7040543014819,6.25096044668112,4.74611098302348,3.93933827022176,4.73674568108111,5.30331453852602,4.27115042397309,5.03278503728312,4.7707501799906,6.72586884950391,3.76823835312181,0.860423876981386,4.0798280022465,0.539703191637817,1.94932925234301,0.448026887097336,3.93244376368905,1.53387290320252,1.55871602761721,3.18005617059306,2.67602497575693,2.56652954828636,0,0,0.865964164044856,1.01343946190039,2.52762222507392,2.39786147410026,7.50919862576798,1.7813056687779,0.693941307064543,1.21786191324856,1.15307748628029,1.05505848386836,1.88141931417128,1.13099932196708,3.70792451601561,1.87979163995885,1.76922110389975,1.61766849947409,2.42925670306433,1.45462575940567,0,1.46390398505774,2.30391377494801,3.0654846625031,1.1981512450592,0.599902730993408,0.762421362438388,8.53806644607489,5.03250663100489,8.04187853522332,5.9100268865374,2.30143911597297,6.85700547046548,4.70499662896497,1.62942982160506,2.23932547098167,4.80173241023982,4.20883711772948,2.08192708740326,2.75882525320168,2.88099407688559,2.10986744970001,3.6739709541717,3.84341160854549,3.18585863503078,6.46758426847539,2.15567992932842,1.51284864134255,1.40760899331159,1.09597866213787,1.11218899690239,0.696504333044333,1.4404749548556,1.19420560091096,0,0.257347907114715,0,2.69263504296152,1.64168241986767,2.34080679899319,2.13070262026689,2.55793501271625,1.69693824176116,2.32533944750408,2.95100741539581,3.61972561338225,1.31647879930784,1.64167464079095,1.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68842 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000151732_5end | |||
|cluster_id=chr17:6106521..6106563,+ | |||
|description=CAGE_peak_3_at_Tulp4_5end | |||
|id=chr17:6106521..6106563,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.09e-11!33;CL:0000047!2.09e-11!33;CL:0000031!2.09e-11!33;CL:0000404!2.09e-11!33;CL:0000117!2.11e-10!23;CL:0000337!2.11e-10!23;CL:0000393!1.51e-09!39;CL:0000211!1.51e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.83e-11,33;CL:0000047,1.83e-11,33;CL:0000031,1.83e-11,33;CL:0000404,1.83e-11,33;CL:0000117,1.87e-10,23;CL:0000337,1.87e-10,23;CL:0000393,1.36e-09,39;CL:0000211,1.36e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!5.65e-18!86;UBERON:0000073!1.12e-15!75;UBERON:0001016!1.12e-15!75;UBERON:0004121!1.36e-15!102;UBERON:0000924!1.36e-15!102;UBERON:0006601!1.36e-15!102;UBERON:0000153!1.96e-15!94;UBERON:0001017!9.48e-15!73;UBERON:0005743!9.48e-15!73;UBERON:0003056!5.92e-14!49;UBERON:0000033!1.01e-13!63;UBERON:0001049!1.26e-13!52;UBERON:0005068!1.26e-13!52;UBERON:0006241!1.26e-13!52;UBERON:0007135!1.26e-13!52;UBERON:0003080!1.38e-12!40;UBERON:0000955!2.67e-12!50;UBERON:0006238!2.67e-12!50;UBERON:0002346!3.56e-12!71;UBERON:0003075!3.56e-12!71;UBERON:0007284!3.56e-12!71;UBERON:0002780!5.42e-12!39;UBERON:0001890!5.42e-12!39;UBERON:0006240!5.42e-12!39;UBERON:0002616!6.28e-12!49;UBERON:0002020!4.83e-11!34;UBERON:0002791!2.26e-09!29;UBERON:0003528!2.26e-09!29;UBERON:0001893!2.26e-09!29;UBERON:0000064!1.30e-07!99;UBERON:0000477!1.68e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.26e-19,95;UBERON:0000924,8.26e-19,95;UBERON:0006601,8.26e-19,95;UBERON:0010371,3.13e-16,73;UBERON:0001016,8.86e-16,75;UBERON:0002346,1.44e-15,64;UBERON:0003075,1.44e-15,64;UBERON:0007284,1.44e-15,64;UBERON:0001017,7.61e-15,73;UBERON:0003056,8.54e-14,49;UBERON:0000073,1.23e-13,54;UBERON:0001049,1.38e-13,52;UBERON:0005068,1.38e-13,52;UBERON:0006241,1.38e-13,52;UBERON:0007135,1.38e-13,52;UBERON:0003080,2.06e-12,40;UBERON:0002780,8.09e-12,39;UBERON:0001890,8.09e-12,39;UBERON:0006240,8.09e-12,39;UBERON:0000955,1.21e-11,47;UBERON:0006238,1.21e-11,47;UBERON:0002616,2.81e-11,46;UBERON:0002020,7.35e-11,34;UBERON:0010314,5.32e-10,92;UBERON:0003528,3.48e-09,29;UBERON:0002791,3.48e-09,29;UBERON:0001893,3.48e-09,29;UBERON:0000483,3.66e-07,174 | |||
|phase1_expression=2.24208385946712,1.74487703819681,2.27499619694768,2.72217790176147,2.00358291978539,0.839396359559449,2.56973904655078,5.29405626110463,9.01047821770667,8.89445200023575,2.39705155515707,1.91453181588807,6.84802919724823,5.24522414513984,0.333109761815663,1.21485160433896,0,4.41647031501533,5.89592064504677,2.97072756258621,7.22867966284093,2.18440092641948,2.61199789138935,3.67982572424835,2.52350209173887,1.14846392823004,3.01533397311352,3.01659725760245,1.14014051673824,0.756090389279792,1.10865255327652,0.635030673459631,2.46025915033828,0,0.577703239502549,0.166234645358492,1.22501613757421,0,0,0.523523743973798,0.588231488031014,0,0,1.38486499773135,2.43304634926835,2.0190142737785,0,1.09012578190223,0.878744730937887,0.972149495371417,0.979904951377538,0,7.04686945442493,7.25362142011344,14.452033363126,2.57259436035947,2.0057340795713,1.03134418455488,7.08107613008592,11.6378015439847,10.775133859605,0,0.889294796111139,0.899899717281399,0,1.4209602298922,0,0.384218305321555,4.66603255388149,2.70011876663381,4.41682418837902,3.99911378165325,3.3130281142742,8.08439274818697,8.05101956553185,7.35375029288017,2.20231761998777,3.83062014255563,5.52983519722476,10.5509030184155,10.7040543014819,6.25096044668112,4.74611098302348,3.93933827022176,4.73674568108111,5.30331453852602,4.27115042397309,5.03278503728312,4.7707501799906,6.72586884950391,3.76823835312181,0.860423876981386,4.0798280022465,0.539703191637817,1.94932925234301,0.448026887097336,3.93244376368905,1.53387290320252,1.55871602761721,3.18005617059306,2.67602497575693,2.56652954828636,0,0,0.865964164044856,1.01343946190039,2.52762222507392,2.39786147410026,7.50919862576798,1.7813056687779,0.693941307064543,1.21786191324856,1.15307748628029,1.05505848386836,1.88141931417128,1.13099932196708,3.70792451601561,1.87979163995885,1.76922110389975,1.61766849947409,2.42925670306433,1.45462575940567,0,1.46390398505774,2.30391377494801,3.0654846625031,1.1981512450592,0.599902730993408,0.762421362438388,8.53806644607489,5.03250663100489,8.04187853522332,5.9100268865374,2.30143911597297,6.85700547046548,4.70499662896497,1.62942982160506,2.23932547098167,4.80173241023982,4.20883711772948,2.08192708740326,2.75882525320168,2.88099407688559,2.10986744970001,3.6739709541717,3.84341160854549,3.18585863503078,6.46758426847539,2.15567992932842,1.51284864134255,1.40760899331159,1.09597866213787,1.11218899690239,0.696504333044333,1.4404749548556,1.19420560091096,0,0.257347907114715,0,2.69263504296152,1.64168241986767,2.34080679899319,2.13070262026689,2.55793501271625,1.69693824176116,2.32533944750408,2.95100741539581,3.61972561338225,1.31647879930784,1.64167464079095,1.4592385718254,1.46199987425332,1.3173006917463,2.41571553768669,3.36463917702604,8.74689205223918,2.64335026387038,1.58670339998127,1.49301775374664,0.928946687441754,2.57734922644187,2.42020229548011,2.89091456998331,2.66315876557583,2.84717436926707,2.30578536613615,1.00534083520108,1.39269530428806,0.779856348476481,0.898819408654221,0.432276099749388,2.19055400579804,2.27601481143698,2.05647322697512,2.25415471346161,0.814605311381257,0.775809948670503,2.17421041659988,1.39120381673366,1.77132177575523,0.627994911365499,0.863780147452604,1.77871576252289,1.16791574001266,1.17935397067922,0.224862112384854,0.811440485554012,1.92941727801933,0,1.15078454980324,0.648540907100142,0.549122826376163,1.43768206527355,1.11642284300551,0.936113019343682,1.01031551178845,0.538192240565737,1.92977408545347,3.8798169934987,0.947457058852424,1.95557971730431,1.35796068620151,2.11221223459652,2.01007508930179,1.6663054862021,3.31727201358258,3.31033802623001,2.21464689648775,2.87018583583477,1.80249646187312,1.55416483679306,2.16973587872267,7.53956419696361,4.89515115436839,1.96705709207614,4.41498794087572,8.18808008937739,5.74337264301796,1.63934945376675,0.504941854408746,2.52406575533005,2.73307121007647,3.66219776145758,4.77937595905104,6.01556420022464,4.52922449262132,1.61924280669958,3.79932615284705,2.76701444562566,4.4984984299053,3.54850213020672,0.534196811001766,1.79175655288934,1.97964147567043,0,1.45668381692989,1.51161778482376,0.943025398779491,1.18120757152309,0.922305443831782,1.55056975900933,1.81766864738753,0.356497378384721,2.52829406348653,1.05418608574999,1.03135543248187,4.42571487479924,2.34079422240703,2.58717367565509,3.00071849044229,5.67488747655275,5.35106452806212,3.1264313914403,3.65357938937519,1.17335854031855,2.1183207086382,1.98475558249466,3.2977250588296,3.06782410722221,2.5934557719107,1.79058516004705,3.61109979439135,1.7488850197791,8.15871328846243,2.22132145037209,1.44470807574256,1.66675074632741,0.941842285023455,2.87057878214153,1.60144721244566,1.01987057996313,0.979660166265606,0.967399816630967,1.90934123603023,1.42351197111511,2.03319467126849,1.18805874903981,2.50905955217362,1.74690050996942,1.48350781023303,1.48776220305605,2.09404753587224,0.388844919875379,3.72803587852155,23.675103424736,1.64468200648377,0.827292452285488,1.1667071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| |||
|short_description=p3@Tulp4 | |||
}} |
Revision as of 05:16, 5 August 2015
Short description: | p3@Tulp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tulp4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000151732_5end |
EntrezGene: | 68842 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.83e-11 | 33 |
neuronal stem cell | 1.83e-11 | 33 |
neuroblast | 1.83e-11 | 33 |
electrically signaling cell | 1.83e-11 | 33 |
CNS neuron (sensu Vertebrata) | 1.87e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.87e-10 | 23 |
electrically responsive cell | 1.36e-09 | 39 |
electrically active cell | 1.36e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.26e-19 | 95 |
ectoderm | 8.26e-19 | 95 |
presumptive ectoderm | 8.26e-19 | 95 |
ecto-epithelium | 3.13e-16 | 73 |
nervous system | 8.86e-16 | 75 |
neurectoderm | 1.44e-15 | 64 |
neural plate | 1.44e-15 | 64 |
presumptive neural plate | 1.44e-15 | 64 |
central nervous system | 7.61e-15 | 73 |
pre-chordal neural plate | 8.54e-14 | 49 |
regional part of nervous system | 1.23e-13 | 54 |
neural tube | 1.38e-13 | 52 |
neural rod | 1.38e-13 | 52 |
future spinal cord | 1.38e-13 | 52 |
neural keel | 1.38e-13 | 52 |
anterior neural tube | 2.06e-12 | 40 |
regional part of forebrain | 8.09e-12 | 39 |
forebrain | 8.09e-12 | 39 |
future forebrain | 8.09e-12 | 39 |
brain | 1.21e-11 | 47 |
future brain | 1.21e-11 | 47 |
regional part of brain | 2.81e-11 | 46 |
gray matter | 7.35e-11 | 34 |
structure with developmental contribution from neural crest | 5.32e-10 | 92 |
brain grey matter | 3.48e-09 | 29 |
regional part of telencephalon | 3.48e-09 | 29 |
telencephalon | 3.48e-09 | 29 |
epithelium | 3.66e-07 | 174 |