FFCP PHASE1:Mm9::chr15:96473314..96473415,-: Difference between revisions
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{{FFCP|EntrezGene=105727|HGNC=|UniProt=Q8K2P7|association_with_transcript=0bp_to_ENSMUST00000088452,NM_001166458,uc007xkj.2_5end|description=CAGE_peak_1_at_Slc38a1_5end|id=chr15:96473314..96473415,-|ontology_enrichment_celltype=CL:0000540!2.18e-08!33;CL:0000047!2.18e-08!33;CL:0000031!2.18e-08!33;CL:0000404!2.18e-08!33;CL:0000117!4.34e-08!23;CL:0000337!4.34e-08!23;CL:0000221!1.94e-07!44;CL:0000133!1.94e-07!44;CL:0002319!3.56e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,2.15e-08,33;CL:0000047,2.15e-08,33;CL:0000031,2.15e-08,33;CL:0000404,2.15e-08,33;CL:0000117,4.29e-08,23;CL:0000337,4.29e-08,23;CL:0000221,1.92e-07,44;CL:0000133,1.92e-07,44;CL:0002319,3.53e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.28e-25!94;UBERON:0007811!1.55e-23!86;UBERON:0001017!3.19e-20!73;UBERON:0005743!3.19e-20!73;UBERON:0000073!1.38e-18!75;UBERON:0001016!1.38e-18!75;UBERON:0000033!5.28e-17!63;UBERON:0000955!5.16e-16!50;UBERON:0006238!5.16e-16!50;UBERON:0001049!6.33e-16!52;UBERON:0005068!6.33e-16!52;UBERON:0006241!6.33e-16!52;UBERON:0007135!6.33e-16!52;UBERON:0002616!2.36e-15!49;UBERON:0002346!2.38e-15!71;UBERON:0003075!2.38e-15!71;UBERON:0007284!2.38e-15!71;UBERON:0003056!4.93e-14!49;UBERON:0004121!1.50e-12!102;UBERON:0000924!1.50e-12!102;UBERON:0006601!1.50e-12!102;UBERON:0003080!4.51e-12!40;UBERON:0002780!1.70e-11!39;UBERON:0001890!1.70e-11!39;UBERON:0006240!1.70e-11!39;UBERON:0002020!5.68e-10!34;UBERON:0002791!2.38e-08!29;UBERON:0003528!2.38e-08!29;UBERON:0001893!2.38e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.09e-20,73;UBERON:0001016,1.34e-18,75;UBERON:0002346,1.70e-18,64;UBERON:0003075,1.70e-18,64;UBERON:0007284,1.70e-18,64;UBERON:0000073,3.50e-17,54;UBERON:0010314,2.95e-16,92;UBERON:0001049,6.17e-16,52;UBERON:0005068,6.17e-16,52;UBERON:0006241,6.17e-16,52;UBERON:0007135,6.17e-16,52;UBERON:0004121,1.55e-14,95;UBERON:0000924,1.55e-14,95;UBERON:0006601,1.55e-14,95;UBERON:0000955,2.35e-14,47;UBERON:0006238,2.35e-14,47;UBERON:0003056,4.82e-14,49;UBERON:0010371,7.56e-14,73;UBERON:0002616,1.03e-13,46;UBERON:0003080,4.43e-12,40;UBERON:0002780,1.67e-11,39;UBERON:0001890,1.67e-11,39;UBERON:0006240,1.67e-11,39;UBERON:0002020,5.60e-10,34;UBERON:0003528,2.35e-08,29;UBERON:0002791,2.35e-08,29;UBERON:0001893,2.35e-08,29;UBERON:0000153,3.38e-08,43;UBERON:0007811,2.85e-07,36|phase1_expression=17.6163731815273,1.04692622291808,1.36499771816861,0.30246421130683,0.500895729946347,4.70061961353291,3.50418960893289,12.6540856972745,16.8946466582,24.1086462111653,13.1837835533639,15.3162545271046,15.0656642339461,14.9488888136486,9.99329285446988,10.9336644390506,5.59649502502517,26.498821890092,26.6002001195133,24.6145998042858,7.99406927420056,22.2411730689983,13.5823890352246,5.11975752938901,5.04700418347774,0,1.29228598847722,3.66301095566011,1.33016393619462,1.76421090831952,3.99114919179548,8.89042942843484,11.0711661765223,0,6.06588401477677,5.31950865147176,7.14592746918292,3.34825304589526,5.4693474116666,4.71171369576418,0.588231488031014,2.04913645487534,1.94204141212461,0,0.101376931219515,0.183546752161682,3.9119567217402,15.0437357902508,7.90870257844099,14.7766723296455,14.1386285841616,21.5628846547457,20.8050431511593,16.6833292662609,25.5431287348273,0.514518872071894,2.86533439938757,2.57836046138721,20.2316460859598,13.2247744818008,15.8457850876545,1.35537812827653,0.889294796111139,7.19919773825119,1.97773272513395,6.3943210345149,12.583204641773,16.9056054341484,22.3969562586312,19.3058491814318,19.9808713283813,17.424710048632,19.436431603742,14.9438775042244,18.3064849644831,15.6267193723704,26.4278114398533,27.7081523644857,28.8780282521738,25.190280956467,20.9506703849518,21.8783615633839,22.3346399201105,18.0084035210138,21.2389564409766,22.6864010814724,23.2065839702538,22.927131836512,2.04460721999597,1.13357340160178,0.579728977403356,0,0.679971333707751,0,0.649776417447669,0,4.0728881838208,0,0,0,20.1406090280653,0,0,0,1.29894624606728,2.78695852022608,1.51657333504435,3.4255163915718,38.0638688961342,2.67195850316685,10.7560902595004,7.61163695780353,5.99600292865752,6.93324146542064,6.34979018532806,2.01066546127481,1.48316980640624,2.60278842455841,8.84610551949874,7.76480879747564,9.71702681225732,7.27312879702833,1.86391761218122,28.9852989041432,28.2753054198164,2.04365644166873,23.2441341541485,14.3976655438418,15.3754974758408,30.5572904385838,19.6725259212009,15.2041766056566,28.8548371519179,29.9187085076487,30.9604186393745,24.3361894601636,12.7299204812895,8.08645308965605,0.758168275301024,6.31325567659422,22.2505957466223,16.5529515192101,18.9065236295617,21.701493768343,24.289030197024,20.2419678050063,24.8309570083281,13.9699820199068,24.3591832014112,26.2857451433269,19.7065259063623,17.7548543266336,15.2925987074079,7.66154766348766,8.0255033199098,9.35461054046918,11.937624184325,9.26452465612975,14.7765019685708,25.2693442493312,20.1692411583743,20.7071370680167,26.2786656499583,27.9405209081313,22.368731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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:105727 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8K2P7 | |||
|association_with_transcript=0bp_to_ENSMUST00000088452,NM_001166458,uc007xkj.2_5end | |||
|cluster_id=chr15:96473314..96473415,- | |||
|description=CAGE_peak_1_at_Slc38a1_5end | |||
|id=chr15:96473314..96473415,- | |||
|ontology_enrichment_celltype=CL:0000540!2.18e-08!33;CL:0000047!2.18e-08!33;CL:0000031!2.18e-08!33;CL:0000404!2.18e-08!33;CL:0000117!4.34e-08!23;CL:0000337!4.34e-08!23;CL:0000221!1.94e-07!44;CL:0000133!1.94e-07!44;CL:0002319!3.56e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.15e-08,33;CL:0000047,2.15e-08,33;CL:0000031,2.15e-08,33;CL:0000404,2.15e-08,33;CL:0000117,4.29e-08,23;CL:0000337,4.29e-08,23;CL:0000221,1.92e-07,44;CL:0000133,1.92e-07,44;CL:0002319,3.53e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.28e-25!94;UBERON:0007811!1.55e-23!86;UBERON:0001017!3.19e-20!73;UBERON:0005743!3.19e-20!73;UBERON:0000073!1.38e-18!75;UBERON:0001016!1.38e-18!75;UBERON:0000033!5.28e-17!63;UBERON:0000955!5.16e-16!50;UBERON:0006238!5.16e-16!50;UBERON:0001049!6.33e-16!52;UBERON:0005068!6.33e-16!52;UBERON:0006241!6.33e-16!52;UBERON:0007135!6.33e-16!52;UBERON:0002616!2.36e-15!49;UBERON:0002346!2.38e-15!71;UBERON:0003075!2.38e-15!71;UBERON:0007284!2.38e-15!71;UBERON:0003056!4.93e-14!49;UBERON:0004121!1.50e-12!102;UBERON:0000924!1.50e-12!102;UBERON:0006601!1.50e-12!102;UBERON:0003080!4.51e-12!40;UBERON:0002780!1.70e-11!39;UBERON:0001890!1.70e-11!39;UBERON:0006240!1.70e-11!39;UBERON:0002020!5.68e-10!34;UBERON:0002791!2.38e-08!29;UBERON:0003528!2.38e-08!29;UBERON:0001893!2.38e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.09e-20,73;UBERON:0001016,1.34e-18,75;UBERON:0002346,1.70e-18,64;UBERON:0003075,1.70e-18,64;UBERON:0007284,1.70e-18,64;UBERON:0000073,3.50e-17,54;UBERON:0010314,2.95e-16,92;UBERON:0001049,6.17e-16,52;UBERON:0005068,6.17e-16,52;UBERON:0006241,6.17e-16,52;UBERON:0007135,6.17e-16,52;UBERON:0004121,1.55e-14,95;UBERON:0000924,1.55e-14,95;UBERON:0006601,1.55e-14,95;UBERON:0000955,2.35e-14,47;UBERON:0006238,2.35e-14,47;UBERON:0003056,4.82e-14,49;UBERON:0010371,7.56e-14,73;UBERON:0002616,1.03e-13,46;UBERON:0003080,4.43e-12,40;UBERON:0002780,1.67e-11,39;UBERON:0001890,1.67e-11,39;UBERON:0006240,1.67e-11,39;UBERON:0002020,5.60e-10,34;UBERON:0003528,2.35e-08,29;UBERON:0002791,2.35e-08,29;UBERON:0001893,2.35e-08,29;UBERON:0000153,3.38e-08,43;UBERON:0007811,2.85e-07,36 | |||
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| |||
|short_description=p1@Slc38a1 | |||
}} |
Revision as of 21:58, 5 August 2015
Short description: | p1@Slc38a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc38a1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000088452, NM_001166458, uc007xkj.2_5end |
EntrezGene: | 105727 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.15e-08 | 33 |
neuronal stem cell | 2.15e-08 | 33 |
neuroblast | 2.15e-08 | 33 |
electrically signaling cell | 2.15e-08 | 33 |
CNS neuron (sensu Vertebrata) | 4.29e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.29e-08 | 23 |
ectodermal cell | 1.92e-07 | 44 |
neurectodermal cell | 1.92e-07 | 44 |
neural cell | 3.53e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.09e-20 | 73 |
nervous system | 1.34e-18 | 75 |
neurectoderm | 1.70e-18 | 64 |
neural plate | 1.70e-18 | 64 |
presumptive neural plate | 1.70e-18 | 64 |
regional part of nervous system | 3.50e-17 | 54 |
structure with developmental contribution from neural crest | 2.95e-16 | 92 |
neural tube | 6.17e-16 | 52 |
neural rod | 6.17e-16 | 52 |
future spinal cord | 6.17e-16 | 52 |
neural keel | 6.17e-16 | 52 |
ectoderm-derived structure | 1.55e-14 | 95 |
ectoderm | 1.55e-14 | 95 |
presumptive ectoderm | 1.55e-14 | 95 |
brain | 2.35e-14 | 47 |
future brain | 2.35e-14 | 47 |
pre-chordal neural plate | 4.82e-14 | 49 |
ecto-epithelium | 7.56e-14 | 73 |
regional part of brain | 1.03e-13 | 46 |
anterior neural tube | 4.43e-12 | 40 |
regional part of forebrain | 1.67e-11 | 39 |
forebrain | 1.67e-11 | 39 |
future forebrain | 1.67e-11 | 39 |
gray matter | 5.60e-10 | 34 |
brain grey matter | 2.35e-08 | 29 |
regional part of telencephalon | 2.35e-08 | 29 |
telencephalon | 2.35e-08 | 29 |
anterior region of body | 3.38e-08 | 43 |
craniocervical region | 2.85e-07 | 36 |