FFCP PHASE1:Mm9::chr15:85166651..85166662,+: Difference between revisions
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{{FFCP|EntrezGene=54138|HGNC=|MCL_coexpression_id=643|UniProt=F8WGN7|association_with_transcript=-105bp_to_ENSMUST00000016685_5end|description=CAGE_peak_7_at_Atxn10_5end|id=chr15:85166651..85166662,+|ontology_enrichment_celltype=CL:0000221!2.12e-15!44;CL:0000133!2.12e-15!44;CL:0002319!7.74e-15!43;CL:0000055!3.13e-13!50;CL:0000540!3.27e-13!33;CL:0000047!3.27e-13!33;CL:0000031!3.27e-13!33;CL:0000404!3.27e-13!33;CL:0000117!8.17e-12!23;CL:0000337!8.17e-12!23;CL:0000393!2.70e-11!39;CL:0000211!2.70e-11!39|ontology_enrichment_celltype_v019_2=CL:0000221,6.86e-17,44;CL:0000133,6.86e-17,44;CL:0002319,2.81e-16,43;CL:0000540,1.49e-14,33;CL:0000047,1.49e-14,33;CL:0000031,1.49e-14,33;CL:0000404,1.49e-14,33;CL:0000117,4.81e-13,23;CL:0000337,4.81e-13,23;CL:0000393,6.22e-12,39;CL:0000211,6.22e-12,39;CL:0002321,1.28e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.81e-19!73;UBERON:0005743!3.81e-19!73;UBERON:0000073!1.93e-18!75;UBERON:0001016!1.93e-18!75;UBERON:0004121!3.75e-17!102;UBERON:0000924!3.75e-17!102;UBERON:0006601!3.75e-17!102;UBERON:0002346!4.19e-16!71;UBERON:0003075!4.19e-16!71;UBERON:0007284!4.19e-16!71;UBERON:0001049!7.14e-15!52;UBERON:0005068!7.14e-15!52;UBERON:0006241!7.14e-15!52;UBERON:0007135!7.14e-15!52;UBERON:0000033!8.68e-13!63;UBERON:0002616!1.91e-11!49;UBERON:0000955!2.42e-11!50;UBERON:0006238!2.42e-11!50;UBERON:0003056!4.26e-11!49;UBERON:0002020!2.12e-10!34;UBERON:0003080!3.12e-10!40;UBERON:0002780!4.94e-10!39;UBERON:0001890!4.94e-10!39;UBERON:0006240!4.94e-10!39;UBERON:0007811!1.21e-08!86;UBERON:0000153!1.38e-08!94;UBERON:0002791!1.39e-07!29;UBERON:0003528!1.39e-07!29;UBERON:0001893!1.39e-07!29;UBERON:0000025!3.20e-07!114;UBERON:0004111!7.39e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.26e-21,73;UBERON:0001016,5.06e-20,75;UBERON:0010314,7.72e-19,92;UBERON:0004121,6.96e-18,95;UBERON:0000924,6.96e-18,95;UBERON:0006601,6.96e-18,95;UBERON:0002346,3.82e-17,64;UBERON:0003075,3.82e-17,64;UBERON:0007284,3.82e-17,64;UBERON:0001049,7.37e-16,52;UBERON:0005068,7.37e-16,52;UBERON:0006241,7.37e-16,52;UBERON:0007135,7.37e-16,52;UBERON:0000073,1.36e-15,54;UBERON:0010371,7.00e-15,73;UBERON:0002616,2.54e-12,46;UBERON:0000955,3.39e-12,47;UBERON:0006238,3.39e-12,47;UBERON:0003056,1.59e-11,49;UBERON:0002020,5.16e-11,34;UBERON:0003080,7.66e-11,40;UBERON:0002780,1.26e-10,39;UBERON:0001890,1.26e-10,39;UBERON:0006240,1.26e-10,39;UBERON:0003528,5.64e-08,29;UBERON:0002791,5.64e-08,29;UBERON:0001893,5.64e-08,29;UBERON:0000025,5.23e-07,114|phase1_expression=3.52327463630547,0.348975407639361,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0.513653904676515,1.7549874978974,0.684802919724823,1.13646523144697,0,0,0,0.157731082679119,0.959801035240171,0.42438965179803,3.82694805679814,0.397163804803541,0,0.319984845586813,0.22940928106717,0.57423196411502,0,0.646413698057667,0.570070258369122,0,0.221730510655305,0,0,0,0.288851619751275,0,0.408338712524738,1.67412652294763,0.7813353445238,2.09409497589519,0.588231488031014,1.36609096991689,0.971020706062307,0.629484089877886,1.21652317463417,2.0190142737785,1.56478268869608,6.5407546914134,5.05278220289285,3.11087838518853,2.79972843250725,1.43752564364972,0.335565212115473,0,0.336093799142464,0.771778308107841,0.573066879877513,1.54701627683233,8.6996078169627,2.11596391708813,2.53532561402472,2.71075625655306,1.77858959222228,0.449949858640699,0,0,2.09720077362883,2.68952813725088,6.84351441235953,6.48028503992115,7.15104868594699,9.42648248532552,5.30084498283872,5.51208596467293,9.20116521775069,2.75765635983006,0,2.042997409363,3.37934373163736,8.70449499019279,10.5210790142771,9.37644067002168,2.51264699101243,3.37657566019008,4.73674568108111,5.59794312399969,5.83723891276322,9.50637173709033,1.36307147999731,0.453429360640713,0,1.72084775396277,0,1.61910957491345,0,1.34408066129201,0.983110940922263,1.53387290320252,2.33807404142582,0.70667914902068,4.22530259330042,0,5.09610479413291,0,1.08245520505607,1.77351905832569,1.51657333504435,0.68510327831436,0.517875767294343,0.890652834388949,2.08182392119363,0.913396434936424,0.691846491768175,1.80867168663147,1.52865319276416,3.01599819191221,1.73036477414062,1.01219549843938,0,2.42650274921114,0.883366073841574,0.484875253135222,0,1.46390398505774,2.09446706813455,0,0.239630249011841,0,0.635351135365324,1.9472783122627,0.457500602818626,6.53402630986895,3.12883776346098,3.06858548796397,2.0778804455956,1.62241263067758,1.12023300235348,0.995255764880744,0.505445516867349,0.841767423545896,1.43132487258974,2.29902104433473,1.44049703844279,3.0140963567143,2.58538696775046,1.40925092313335,4.77878795254617,1.03481348295606,2.15567992932842,1.13463648100692,1.93546236580344,2.19195732427575,0.556094498451196,2.43776516565517,0.411564272815887,1.19420560091096,0,0.51469581422943,0.568326998791185,3.10688658803253,1.64168241986767,1.80062061461015,1.18372367792605,1.96764231747404,1.85120535464854,1.62773761325285,4.02410102099429,1.98501082024188,1.6455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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:54138 | |||
|HGNC= | |||
|MCL_coexpression_id=643 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F8WGN7 | |||
|association_with_transcript=-105bp_to_ENSMUST00000016685_5end | |||
|cluster_id=chr15:85166651..85166662,+ | |||
|description=CAGE_peak_7_at_Atxn10_5end | |||
|id=chr15:85166651..85166662,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.12e-15!44;CL:0000133!2.12e-15!44;CL:0002319!7.74e-15!43;CL:0000055!3.13e-13!50;CL:0000540!3.27e-13!33;CL:0000047!3.27e-13!33;CL:0000031!3.27e-13!33;CL:0000404!3.27e-13!33;CL:0000117!8.17e-12!23;CL:0000337!8.17e-12!23;CL:0000393!2.70e-11!39;CL:0000211!2.70e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.86e-17,44;CL:0000133,6.86e-17,44;CL:0002319,2.81e-16,43;CL:0000540,1.49e-14,33;CL:0000047,1.49e-14,33;CL:0000031,1.49e-14,33;CL:0000404,1.49e-14,33;CL:0000117,4.81e-13,23;CL:0000337,4.81e-13,23;CL:0000393,6.22e-12,39;CL:0000211,6.22e-12,39;CL:0002321,1.28e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.81e-19!73;UBERON:0005743!3.81e-19!73;UBERON:0000073!1.93e-18!75;UBERON:0001016!1.93e-18!75;UBERON:0004121!3.75e-17!102;UBERON:0000924!3.75e-17!102;UBERON:0006601!3.75e-17!102;UBERON:0002346!4.19e-16!71;UBERON:0003075!4.19e-16!71;UBERON:0007284!4.19e-16!71;UBERON:0001049!7.14e-15!52;UBERON:0005068!7.14e-15!52;UBERON:0006241!7.14e-15!52;UBERON:0007135!7.14e-15!52;UBERON:0000033!8.68e-13!63;UBERON:0002616!1.91e-11!49;UBERON:0000955!2.42e-11!50;UBERON:0006238!2.42e-11!50;UBERON:0003056!4.26e-11!49;UBERON:0002020!2.12e-10!34;UBERON:0003080!3.12e-10!40;UBERON:0002780!4.94e-10!39;UBERON:0001890!4.94e-10!39;UBERON:0006240!4.94e-10!39;UBERON:0007811!1.21e-08!86;UBERON:0000153!1.38e-08!94;UBERON:0002791!1.39e-07!29;UBERON:0003528!1.39e-07!29;UBERON:0001893!1.39e-07!29;UBERON:0000025!3.20e-07!114;UBERON:0004111!7.39e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.26e-21,73;UBERON:0001016,5.06e-20,75;UBERON:0010314,7.72e-19,92;UBERON:0004121,6.96e-18,95;UBERON:0000924,6.96e-18,95;UBERON:0006601,6.96e-18,95;UBERON:0002346,3.82e-17,64;UBERON:0003075,3.82e-17,64;UBERON:0007284,3.82e-17,64;UBERON:0001049,7.37e-16,52;UBERON:0005068,7.37e-16,52;UBERON:0006241,7.37e-16,52;UBERON:0007135,7.37e-16,52;UBERON:0000073,1.36e-15,54;UBERON:0010371,7.00e-15,73;UBERON:0002616,2.54e-12,46;UBERON:0000955,3.39e-12,47;UBERON:0006238,3.39e-12,47;UBERON:0003056,1.59e-11,49;UBERON:0002020,5.16e-11,34;UBERON:0003080,7.66e-11,40;UBERON:0002780,1.26e-10,39;UBERON:0001890,1.26e-10,39;UBERON:0006240,1.26e-10,39;UBERON:0003528,5.64e-08,29;UBERON:0002791,5.64e-08,29;UBERON:0001893,5.64e-08,29;UBERON:0000025,5.23e-07,114 | |||
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| |||
|short_description=p7@Atxn10 | |||
}} |
Revision as of 18:54, 5 August 2015
Short description: | p7@Atxn10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Atxn10_5end |
Coexpression cluster: | MCL_coexpression_mm9:643 |
Association with transcript: | -105bp_to_ENSMUST00000016685_5end |
EntrezGene: | 54138 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.86e-17 | 44 |
neurectodermal cell | 6.86e-17 | 44 |
neural cell | 2.81e-16 | 43 |
neuron | 1.49e-14 | 33 |
neuronal stem cell | 1.49e-14 | 33 |
neuroblast | 1.49e-14 | 33 |
electrically signaling cell | 1.49e-14 | 33 |
CNS neuron (sensu Vertebrata) | 4.81e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.81e-13 | 23 |
electrically responsive cell | 6.22e-12 | 39 |
electrically active cell | 6.22e-12 | 39 |
embryonic cell | 1.28e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.26e-21 | 73 |
nervous system | 5.06e-20 | 75 |
structure with developmental contribution from neural crest | 7.72e-19 | 92 |
ectoderm-derived structure | 6.96e-18 | 95 |
ectoderm | 6.96e-18 | 95 |
presumptive ectoderm | 6.96e-18 | 95 |
neurectoderm | 3.82e-17 | 64 |
neural plate | 3.82e-17 | 64 |
presumptive neural plate | 3.82e-17 | 64 |
neural tube | 7.37e-16 | 52 |
neural rod | 7.37e-16 | 52 |
future spinal cord | 7.37e-16 | 52 |
neural keel | 7.37e-16 | 52 |
regional part of nervous system | 1.36e-15 | 54 |
ecto-epithelium | 7.00e-15 | 73 |
regional part of brain | 2.54e-12 | 46 |
brain | 3.39e-12 | 47 |
future brain | 3.39e-12 | 47 |
pre-chordal neural plate | 1.59e-11 | 49 |
gray matter | 5.16e-11 | 34 |
anterior neural tube | 7.66e-11 | 40 |
regional part of forebrain | 1.26e-10 | 39 |
forebrain | 1.26e-10 | 39 |
future forebrain | 1.26e-10 | 39 |
brain grey matter | 5.64e-08 | 29 |
regional part of telencephalon | 5.64e-08 | 29 |
telencephalon | 5.64e-08 | 29 |
tube | 5.23e-07 | 114 |