FFCP PHASE1:Hg19::chr4:48485239..48485249,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=201780 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22980 | |||
|TSSclassifier=strong | |||
|UniProt=Q96EP9 | |||
|association_with_transcript=-110bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_9_at_SLC10A4_5end | |||
|id=chr4:48485239..48485249,+ | |||
|ontology_enrichment_celltype=CL:0000047!3.56e-16!8;CL:0002605!7.75e-16!3;CL:0002319!6.58e-14!25;CL:0000540!2.68e-08!6;CL:0000031!2.68e-08!6;CL:0000404!2.68e-08!6;CL:0000133!4.28e-08!59;CL:0000128!4.84e-07!7;CL:0000126!4.84e-07!7;CL:0000127!4.84e-07!7;CL:0002453!4.84e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000047;7.79e-79;2!CL:0000333;1.05e-32;5!CL:0002321;1.15e-11;15!CL:0002319;7.45e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.21e-20,8;CL:0000133,4.53e-11,59;CL:0000221,3.07e-09,72;CL:0002319,7.67e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000133;7.94e-08;59 | |||
|ontology_enrichment_disease=DOID:8692!4.92e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:169;1.82e-27;6!DOID:171;5.90e-17;10!DOID:3095;2.82e-08;22!DOID:2994;2.82e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.82e-27,6;DOID:171,5.90e-17,10;DOID:3095,2.82e-08,22;DOID:2994,2.82e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.62e-24!94;UBERON:0001016!6.62e-24!94;UBERON:0005743!5.91e-22!86;UBERON:0001017!5.07e-21!82;UBERON:0001049!8.90e-18!57;UBERON:0005068!8.90e-18!57;UBERON:0006241!8.90e-18!57;UBERON:0007135!8.90e-18!57;UBERON:0002020!1.17e-17!34;UBERON:0003528!1.17e-17!34;UBERON:0001893!1.69e-17!34;UBERON:0002616!4.56e-17!59;UBERON:0000956!5.87e-17!25;UBERON:0000203!5.87e-17!25;UBERON:0002780!8.75e-17!41;UBERON:0001890!8.75e-17!41;UBERON:0006240!8.75e-17!41;UBERON:0003080!2.49e-16!42;UBERON:0001869!1.01e-15!32;UBERON:0002791!3.83e-15!33;UBERON:0004121!5.34e-15!169;UBERON:0000924!1.60e-14!173;UBERON:0006601!1.60e-14!173;UBERON:0003056!3.27e-14!61;UBERON:0000955!6.98e-14!69;UBERON:0006238!6.98e-14!69;UBERON:0003075!7.24e-14!86;UBERON:0007284!7.24e-14!86;UBERON:0002346!4.39e-13!90;UBERON:0002148!7.45e-11!2;UBERON:0009662!7.45e-11!2;UBERON:0000033!1.06e-09!123;UBERON:0002619!2.04e-09!22;UBERON:0000153!4.53e-09!129;UBERON:0007811!4.53e-09!129;UBERON:0007023!3.02e-08!115;UBERON:0001950!9.38e-08!20;UBERON:0000988!1.64e-07!3;UBERON:0006331!1.64e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.05e-32;5!UBERON:0002410;1.05e-32;5!UBERON:0000010;1.03e-18;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.05e-32,5;UBERON:0002410,1.05e-32,5;UBERON:0000010,1.03e-18,8;UBERON:0001016,1.50e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0.811367035427949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,1.58936578980379,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66604358748718,0,2.73024095480035,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0,0.203974470572744,0.436350690340377,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p9@SLC10A4 | |||
}} |
Revision as of 00:59, 22 January 2014
Short description: | p9@SLC10A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SLC10A4_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | -110bp_to_ENST00000273861, NM_152679, uc003gyc.2_5end |
EntrezGene: | SLC10A4 |
HGNC: | 22980 |
UniProt: | Q96EP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.21e-20 | 8 |
neurectodermal cell | 4.53e-11 | 59 |
ectodermal cell | 3.07e-09 | 72 |
neural cell | 7.67e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.05e-32 | 5 |
autonomic nervous system | 1.05e-32 | 5 |
peripheral nervous system | 1.03e-18 | 8 |
nervous system | 1.50e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.82e-27 | 6 |
neuroectodermal tumor | 5.90e-17 | 10 |
germ cell and embryonal cancer | 2.82e-08 | 22 |
germ cell cancer | 2.82e-08 | 22 |