FFCP PHASE1:Mm9::chr14:45840416..45840436,-: Difference between revisions
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{{FFCP|EntrezGene=70561|HGNC=|UniProt=Q7TN22|association_with_transcript=-413bp_to_ENSMUST00000123879,uc007tgg.1_5end|description=CAGE_peak_5_at_Txndc16_5end|id=chr14:45840416..45840436,-|ontology_enrichment_celltype=CL:0000540!3.65e-13!33;CL:0000047!3.65e-13!33;CL:0000031!3.65e-13!33;CL:0000404!3.65e-13!33;CL:0000393!8.44e-11!39;CL:0000211!8.44e-11!39;CL:0000221!1.89e-10!44;CL:0000133!1.89e-10!44;CL:0002319!6.30e-10!43;CL:0000117!8.86e-10!23;CL:0000337!8.86e-10!23;CL:0000055!5.21e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.33e-12,23;CL:0000337,3.33e-12,23;CL:0000540,6.96e-12,33;CL:0000047,6.96e-12,33;CL:0000031,6.96e-12,33;CL:0000404,6.96e-12,33;CL:0000120,2.51e-10,3;CL:0000393,1.02e-09,39;CL:0000211,1.02e-09,39;CL:0002319,1.31e-08,43;CL:0000221,2.30e-08,44;CL:0000133,2.30e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.39e-20!75;UBERON:0001016!7.39e-20!75;UBERON:0001017!3.34e-19!73;UBERON:0005743!3.34e-19!73;UBERON:0004121!9.61e-18!102;UBERON:0000924!9.61e-18!102;UBERON:0006601!9.61e-18!102;UBERON:0002346!1.47e-14!71;UBERON:0003075!1.47e-14!71;UBERON:0007284!1.47e-14!71;UBERON:0000033!1.22e-13!63;UBERON:0001049!1.44e-13!52;UBERON:0005068!1.44e-13!52;UBERON:0006241!1.44e-13!52;UBERON:0007135!1.44e-13!52;UBERON:0000955!1.23e-12!50;UBERON:0006238!1.23e-12!50;UBERON:0002616!3.57e-12!49;UBERON:0002020!5.12e-12!34;UBERON:0003080!8.01e-12!40;UBERON:0003056!1.14e-11!49;UBERON:0002780!2.21e-11!39;UBERON:0001890!2.21e-11!39;UBERON:0006240!2.21e-11!39;UBERON:0002791!4.84e-11!29;UBERON:0003528!4.84e-11!29;UBERON:0001893!4.84e-11!29;UBERON:0007811!3.64e-09!86;UBERON:0000956!2.70e-08!21;UBERON:0001869!2.70e-08!21;UBERON:0000203!2.70e-08!21;UBERON:0000153!5.63e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0003528,9.61e-12,29;UBERON:0002791,9.61e-12,29;UBERON:0001893,9.61e-12,29;UBERON:0001017,2.86e-11,73;UBERON:0001016,7.12e-11,75;UBERON:0004121,3.36e-10,95;UBERON:0000924,3.36e-10,95;UBERON:0006601,3.36e-10,95;UBERON:0002346,3.51e-10,64;UBERON:0003075,3.51e-10,64;UBERON:0007284,3.51e-10,64;UBERON:0002616,8.94e-10,46;UBERON:0002020,1.00e-09,34;UBERON:0000955,1.63e-09,47;UBERON:0006238,1.63e-09,47;UBERON:0003056,6.72e-09,49;UBERON:0010371,1.54e-08,73;UBERON:0001049,2.32e-08,52;UBERON:0005068,2.32e-08,52;UBERON:0006241,2.32e-08,52;UBERON:0007135,2.32e-08,52;UBERON:0002780,3.15e-08,39;UBERON:0001890,3.15e-08,39;UBERON:0006240,3.15e-08,39;UBERON:0003080,5.67e-08,40;UBERON:0000073,5.83e-08,54;UBERON:0000956,5.30e-07,21;UBERON:0001869,5.30e-07,21;UBERON:0000203,5.30e-07,21|phase1_expression=0.80074423552397,0,0,0,1.00179145989269,0,0,2.84071311571468,0.84473233291,0.936258105287974,0,0,2.73921167889929,1.92324885321794,0,0,0,0.788655413395594,0.411343300817216,0,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0.577703239502549,0.166234645358492,0.408338712524738,0.837063261473815,0,0.523523743973798,1.76469446409304,1.36609096991689,0.485510353031154,0.251793635951155,0,0,0,0,0,0,0.139986421625363,0,0.335565212115473,0,0.672187598284928,0,0,0.515672092277442,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0.384218305321555,0.725827286159344,1.21505344498522,0.630974884054146,0,0.441737081903227,1.5923803897944,1.0543001812006,0.919218786610021,0,0.893811366596314,0.46081959976873,1.31886287730194,1.37231465403614,0,1.11673199600552,1.12552522006336,0.45839474333043,0.589257170947335,0.854230084794618,0.559198337475902,0.454357159999104,0.377857800533928,1.44932244350839,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0.148442139064825,0.173485326766136,0.304465478312141,0,0.301445281105245,0.117588707135705,0,0,0.289198713839823,0,0,0,0,0,1.75668478206928,4.60782754989601,0,0.11981512450592,0.599902730993408,0,0.599162557619291,0.457500602818626,0.502617408451458,0.521472960576829,0.255715457330331,0.41557608911912,0.324482526135515,0.101839363850316,0,0,0,0,0,0.540186389416048,0.30140963567143,0.544291993210623,1.5373646434182,1.40552586839593,0,0,0.189106080167819,0,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0,0.234526059981096,0.540186184383045,0.23674473558521,0.590292695242212,0.308534225774757,0,0,0.116765342367169,0.329119699826961,0.32833492815819,0,0,0,0.402619256281115,0.420579897128254,0.411618449517138,0,0,0,0,0.257734922644187,0.80673409849337,0.667134131534611,0.190225626112559,0,0,0.251335208800269,0,0,0,0,0.398282546508734,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0.509235257325564,0,0.167506257441816,0,0.585400943573396,0.315270288212382,0,0,0,0,0,0,0,0,0.275936746304732,0,0.820481806145422,0,0,0.631016438832513,0.780877488593277,1.29254038639679,0.716906393857656,0.222798674082394,0,0.809621403349789,0.292255857911312,2.37172666767914,0.642642632843614,0,0,0,0.659880491890142,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0.36012218806262,0.646793418913773,0.214337035031592,0.354680467284547,0.178368817602071,0.493647061806363,0,0,0.21183207086382,0,0,0,0.0603129249281559,0.119372344003136,0,0,0.927126510052548,0,0,0,0,0,0,0,0.139951452323658,0.276399947608848,0,0,0,0.432021363287205,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0.258319646955462,0,0,0.2604087696879,0.209718688851422,0,0.576060012515731,0,0,0.102710957164827,0,0,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,0.460325236507177,1.14579102687879,0.68741272937475,0.685082519770642,2.2661816921691,0,1.80128481289688,0.906284817968409,0.51776031175182,0,0.399024873401031,0.682934423016537,0.486213434136588,0.209613162627982,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0.50695859978048,0.188626341386076,0.561849044819294,0.192075457214608,0.402048282689293,0,0.231768651889711,0,0.412085900803307,0.294397840268795,0,0.177475806159338,0,0.290692833264657,0.188218760830661,0.0846146078916765,0.182927972872773,0.526139422875686,0.271608227691724,0,0.118635018124174,0.0985044823755635,0.409231043169689,0.309873682371932,0.192906610981141,0.749431733813838,0.233931608445408,0.429742108096597,0,0,0|short_description=p5@Txndc16}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:70561 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q7TN22 | |||
|association_with_transcript=-413bp_to_ENSMUST00000123879,uc007tgg.1_5end | |||
|cluster_id=chr14:45840416..45840436,- | |||
|description=CAGE_peak_5_at_Txndc16_5end | |||
|id=chr14:45840416..45840436,- | |||
|ontology_enrichment_celltype=CL:0000540!3.65e-13!33;CL:0000047!3.65e-13!33;CL:0000031!3.65e-13!33;CL:0000404!3.65e-13!33;CL:0000393!8.44e-11!39;CL:0000211!8.44e-11!39;CL:0000221!1.89e-10!44;CL:0000133!1.89e-10!44;CL:0002319!6.30e-10!43;CL:0000117!8.86e-10!23;CL:0000337!8.86e-10!23;CL:0000055!5.21e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.33e-12,23;CL:0000337,3.33e-12,23;CL:0000540,6.96e-12,33;CL:0000047,6.96e-12,33;CL:0000031,6.96e-12,33;CL:0000404,6.96e-12,33;CL:0000120,2.51e-10,3;CL:0000393,1.02e-09,39;CL:0000211,1.02e-09,39;CL:0002319,1.31e-08,43;CL:0000221,2.30e-08,44;CL:0000133,2.30e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.39e-20!75;UBERON:0001016!7.39e-20!75;UBERON:0001017!3.34e-19!73;UBERON:0005743!3.34e-19!73;UBERON:0004121!9.61e-18!102;UBERON:0000924!9.61e-18!102;UBERON:0006601!9.61e-18!102;UBERON:0002346!1.47e-14!71;UBERON:0003075!1.47e-14!71;UBERON:0007284!1.47e-14!71;UBERON:0000033!1.22e-13!63;UBERON:0001049!1.44e-13!52;UBERON:0005068!1.44e-13!52;UBERON:0006241!1.44e-13!52;UBERON:0007135!1.44e-13!52;UBERON:0000955!1.23e-12!50;UBERON:0006238!1.23e-12!50;UBERON:0002616!3.57e-12!49;UBERON:0002020!5.12e-12!34;UBERON:0003080!8.01e-12!40;UBERON:0003056!1.14e-11!49;UBERON:0002780!2.21e-11!39;UBERON:0001890!2.21e-11!39;UBERON:0006240!2.21e-11!39;UBERON:0002791!4.84e-11!29;UBERON:0003528!4.84e-11!29;UBERON:0001893!4.84e-11!29;UBERON:0007811!3.64e-09!86;UBERON:0000956!2.70e-08!21;UBERON:0001869!2.70e-08!21;UBERON:0000203!2.70e-08!21;UBERON:0000153!5.63e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,9.61e-12,29;UBERON:0002791,9.61e-12,29;UBERON:0001893,9.61e-12,29;UBERON:0001017,2.86e-11,73;UBERON:0001016,7.12e-11,75;UBERON:0004121,3.36e-10,95;UBERON:0000924,3.36e-10,95;UBERON:0006601,3.36e-10,95;UBERON:0002346,3.51e-10,64;UBERON:0003075,3.51e-10,64;UBERON:0007284,3.51e-10,64;UBERON:0002616,8.94e-10,46;UBERON:0002020,1.00e-09,34;UBERON:0000955,1.63e-09,47;UBERON:0006238,1.63e-09,47;UBERON:0003056,6.72e-09,49;UBERON:0010371,1.54e-08,73;UBERON:0001049,2.32e-08,52;UBERON:0005068,2.32e-08,52;UBERON:0006241,2.32e-08,52;UBERON:0007135,2.32e-08,52;UBERON:0002780,3.15e-08,39;UBERON:0001890,3.15e-08,39;UBERON:0006240,3.15e-08,39;UBERON:0003080,5.67e-08,40;UBERON:0000073,5.83e-08,54;UBERON:0000956,5.30e-07,21;UBERON:0001869,5.30e-07,21;UBERON:0000203,5.30e-07,21 | |||
|phase1_expression=0.80074423552397,0,0,0,1.00179145989269,0,0,2.84071311571468,0.84473233291,0.936258105287974,0,0,2.73921167889929,1.92324885321794,0,0,0,0.788655413395594,0.411343300817216,0,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0.577703239502549,0.166234645358492,0.408338712524738,0.837063261473815,0,0.523523743973798,1.76469446409304,1.36609096991689,0.485510353031154,0.251793635951155,0,0,0,0,0,0,0.139986421625363,0,0.335565212115473,0,0.672187598284928,0,0,0.515672092277442,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0.384218305321555,0.725827286159344,1.21505344498522,0.630974884054146,0,0.441737081903227,1.5923803897944,1.0543001812006,0.919218786610021,0,0.893811366596314,0.46081959976873,1.31886287730194,1.37231465403614,0,1.11673199600552,1.12552522006336,0.45839474333043,0.589257170947335,0.854230084794618,0.559198337475902,0.454357159999104,0.377857800533928,1.44932244350839,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0.148442139064825,0.173485326766136,0.304465478312141,0,0.301445281105245,0.117588707135705,0,0,0.289198713839823,0,0,0,0,0,1.75668478206928,4.60782754989601,0,0.11981512450592,0.599902730993408,0,0.599162557619291,0.457500602818626,0.502617408451458,0.521472960576829,0.255715457330331,0.41557608911912,0.324482526135515,0.101839363850316,0,0,0,0,0,0.540186389416048,0.30140963567143,0.544291993210623,1.5373646434182,1.40552586839593,0,0,0.189106080167819,0,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0,0.234526059981096,0.540186184383045,0.23674473558521,0.590292695242212,0.308534225774757,0,0,0.116765342367169,0.329119699826961,0.32833492815819,0,0,0,0.402619256281115,0.420579897128254,0.411618449517138,0,0,0,0,0.257734922644187,0.80673409849337,0.667134131534611,0.190225626112559,0,0,0.251335208800269,0,0,0,0,0.398282546508734,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0.509235257325564,0,0.167506257441816,0,0.585400943573396,0.315270288212382,0,0,0,0,0,0,0,0,0.275936746304732,0,0.820481806145422,0,0,0.631016438832513,0.780877488593277,1.29254038639679,0.716906393857656,0.222798674082394,0,0.809621403349789,0.292255857911312,2.37172666767914,0.642642632843614,0,0,0,0.659880491890142,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0.36012218806262,0.646793418913773,0.214337035031592,0.354680467284547,0.178368817602071,0.493647061806363,0,0,0.21183207086382,0,0,0,0.0603129249281559,0.119372344003136,0,0,0.927126510052548,0,0,0,0,0,0,0,0.139951452323658,0.276399947608848,0,0,0,0.432021363287205,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0.258319646955462,0,0,0.2604087696879,0.209718688851422,0,0.576060012515731,0,0,0.102710957164827,0,0,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,0.460325236507177,1.14579102687879,0.68741272937475,0.685082519770642,2.2661816921691,0,1.80128481289688,0.906284817968409,0.51776031175182,0,0.399024873401031,0.682934423016537,0.486213434136588,0.209613162627982,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0.50695859978048,0.188626341386076,0.561849044819294,0.192075457214608,0.402048282689293,0,0.231768651889711,0,0.412085900803307,0.294397840268795,0,0.177475806159338,0,0.290692833264657,0.188218760830661,0.0846146078916765,0.182927972872773,0.526139422875686,0.271608227691724,0,0.118635018124174,0.0985044823755635,0.409231043169689,0.309873682371932,0.192906610981141,0.749431733813838,0.233931608445408,0.429742108096597,0,0,0 | |||
|short_description=p5@Txndc16 | |||
}} |
Revision as of 08:02, 4 August 2015
Short description: | p5@Txndc16 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Txndc16_5end |
Coexpression cluster: | NA |
Association with transcript: | -413bp_to_ENSMUST00000123879, uc007tgg.1_5end |
EntrezGene: | 70561 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.33e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.33e-12 | 23 |
neuron | 6.96e-12 | 33 |
neuronal stem cell | 6.96e-12 | 33 |
neuroblast | 6.96e-12 | 33 |
electrically signaling cell | 6.96e-12 | 33 |
granule cell | 2.51e-10 | 3 |
electrically responsive cell | 1.02e-09 | 39 |
electrically active cell | 1.02e-09 | 39 |
neural cell | 1.31e-08 | 43 |
ectodermal cell | 2.30e-08 | 44 |
neurectodermal cell | 2.30e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 9.61e-12 | 29 |
regional part of telencephalon | 9.61e-12 | 29 |
telencephalon | 9.61e-12 | 29 |
central nervous system | 2.86e-11 | 73 |
nervous system | 7.12e-11 | 75 |
ectoderm-derived structure | 3.36e-10 | 95 |
ectoderm | 3.36e-10 | 95 |
presumptive ectoderm | 3.36e-10 | 95 |
neurectoderm | 3.51e-10 | 64 |
neural plate | 3.51e-10 | 64 |
presumptive neural plate | 3.51e-10 | 64 |
regional part of brain | 8.94e-10 | 46 |
gray matter | 1.00e-09 | 34 |
brain | 1.63e-09 | 47 |
future brain | 1.63e-09 | 47 |
pre-chordal neural plate | 6.72e-09 | 49 |
ecto-epithelium | 1.54e-08 | 73 |
neural tube | 2.32e-08 | 52 |
neural rod | 2.32e-08 | 52 |
future spinal cord | 2.32e-08 | 52 |
neural keel | 2.32e-08 | 52 |
regional part of forebrain | 3.15e-08 | 39 |
forebrain | 3.15e-08 | 39 |
future forebrain | 3.15e-08 | 39 |
anterior neural tube | 5.67e-08 | 40 |
regional part of nervous system | 5.83e-08 | 54 |
cerebral cortex | 5.30e-07 | 21 |
cerebral hemisphere | 5.30e-07 | 21 |
pallium | 5.30e-07 | 21 |