FFCP PHASE1:Hg19::chr3:87647430..87647437,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C330 | |||
|description=CAGE_peak_at_chr3:87647430..87647437,- | |||
|id=chr3:87647430..87647437,- | |||
|ontology_enrichment_celltype=CL:0000946!5.05e-34!1;CL:0000786!5.05e-34!1;CL:0000980!5.05e-34!1;CL:0002253!7.67e-18!2;CL:0000785!9.07e-18!2;CL:0000955!9.07e-18!2;CL:0000818!9.07e-18!2;CL:0000954!9.07e-18!2;CL:0000816!9.07e-18!2;CL:0000322!1.85e-12!3;CL:0000817!2.59e-12!3;CL:0000244!1.22e-09!4;CL:0000731!1.22e-09!4;CL:0002563!1.32e-09!4 | |||
|ontology_enrichment_celltype_v019=CL:0000322;2.39e-66;3!CL:0002202;2.62e-23;9!CL:0002632;2.62e-23;9!CL:0002368;1.21e-16;13!CL:0000082;6.95e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.39e-66,3;CL:0002202,2.62e-23,9;CL:0002632,2.62e-23,9;CL:0002368,1.21e-16,13;CL:0000082,6.95e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.67e-08;29!UBERON:0001041;4.53e-08;30 | |||
|ontology_enrichment_disease=DOID:3910!5.48e-18!2;DOID:3908!5.35e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:3910;1.55e-98;2!DOID:3908;1.48e-40;5!DOID:1325;1.78e-29;7!DOID:3904;1.78e-29;7!DOID:3905;2.62e-23;9!DOID:1324;1.22e-14;15!DOID:0050615;8.02e-14;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.55e-98,2;DOID:3908,1.48e-40,5;DOID:1325,1.78e-29,7;DOID:3904,1.78e-29,7;DOID:3905,2.62e-23,9;DOID:1324,1.22e-14,15;DOID:0050615,8.02e-14,16 | |||
|ontology_enrichment_uberon=UBERON:0004903!5.48e-18!2;UBERON:0002173!5.48e-18!2;UBERON:0002186!5.48e-18!2;UBERON:0001255!1.27e-17!2;UBERON:0001556!1.27e-17!2;UBERON:0001046!2.66e-16!19;UBERON:0004821!1.85e-12!3;UBERON:0003215!1.85e-12!3;UBERON:0002299!1.85e-12!3;UBERON:0006524!1.85e-12!3;UBERON:0008874!1.85e-12!3;UBERON:0002169!1.85e-12!3;UBERON:0004894!1.85e-12!3;UBERON:0000060!4.30e-12!12;UBERON:0000162!2.29e-10!14;UBERON:0001353!2.29e-10!14;UBERON:0000163!2.29e-10!14;UBERON:0006866!2.29e-10!14;UBERON:0000164!2.29e-10!14;UBERON:0000931!2.29e-10!14;UBERON:0004122!9.66e-10!15;UBERON:0001052!1.32e-09!4;UBERON:0001242!1.32e-09!4;UBERON:0001262!1.32e-09!4;UBERON:0004786!1.32e-09!4;UBERON:0004808!1.32e-09!4;UBERON:0001277!1.32e-09!4;UBERON:0000365!5.73e-08!5;UBERON:0003350!6.13e-08!5;UBERON:0004907!6.13e-08!5;UBERON:0006554!1.80e-07!44;UBERON:0001008!2.55e-07!45;UBERON:0005911!5.19e-07!82;UBERON:0005910!7.58e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.55e-98;2!UBERON:0002173;1.55e-98;2!UBERON:0002186;1.55e-98;2!UBERON:0004821;2.39e-66;3!UBERON:0007499;2.39e-66;3!UBERON:0003215;2.39e-66;3!UBERON:0010368;2.39e-66;3!UBERON:0009911;2.39e-66;3!UBERON:0002299;2.39e-66;3!UBERON:0006524;2.39e-66;3!UBERON:0008874;2.39e-66;3!UBERON:0002169;2.39e-66;3!UBERON:0004894;2.39e-66;3!UBERON:0009856;3.10e-50;4!UBERON:0000058;3.81e-21;10!UBERON:0007196;1.22e-14;15!UBERON:0001558;1.22e-14;15!UBERON:0004802;6.95e-12;19!UBERON:0000115;6.95e-12;19!UBERON:0002048;1.80e-10;22!UBERON:0000487;1.80e-10;22!UBERON:0004807;1.80e-10;22!UBERON:0000117;1.80e-10;22!UBERON:0000171;1.80e-10;22!UBERON:0000170;1.80e-10;22!UBERON:0006914;2.15e-09;25!UBERON:0005911;2.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.55e-98,2;UBERON:0002173,1.55e-98,2;UBERON:0002186,1.55e-98,2;UBERON:0004821,2.39e-66,3;UBERON:0003215,2.39e-66,3;UBERON:0010368,2.39e-66,3;UBERON:0009911,2.39e-66,3;UBERON:0002299,2.39e-66,3;UBERON:0006524,2.39e-66,3;UBERON:0008874,2.39e-66,3;UBERON:0002169,2.39e-66,3;UBERON:0004894,2.39e-66,3;UBERON:0007196,1.22e-14,15;UBERON:0001558,1.22e-14,15;UBERON:0000058,6.95e-12,19;UBERON:0004802,6.95e-12,19;UBERON:0000115,6.95e-12,19;UBERON:0002048,1.80e-10,22;UBERON:0000487,1.80e-10,22;UBERON:0000117,1.80e-10,22;UBERON:0000171,1.80e-10,22;UBERON:0000170,1.80e-10,22;UBERON:0005597,1.80e-10,22;UBERON:0000118,1.80e-10,22;UBERON:0007499,2.15e-09,25;UBERON:0006914,2.15e-09,25;UBERON:0009856,4.34e-09,26;UBERON:0004807,1.52e-08,28;UBERON:0005178,2.74e-07,34;UBERON:0002224,2.74e-07,34;UBERON:0005181,4.03e-07,35;UBERON:0005153,8.21e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,8.39037045966129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:87647430..87647437,- | |||
}} |
Revision as of 19:59, 21 January 2014
Short description: | p@chr3:87647430..87647437, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr3:87647430..87647437, - |
Coexpression cluster: | C330_bronchioalveolar_oral_signet_embryonic_lymphangiectasia_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.39e-66 | 3 |
epithelial cell of tracheobronchial tree | 2.62e-23 | 9 |
epithelial cell of lower respiratory tract | 2.62e-23 | 9 |
respiratory epithelial cell | 1.21e-16 | 13 |
epithelial cell of lung | 6.95e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.55e-98 | 2 |
alveolar duct | 1.55e-98 | 2 |
bronchiole | 1.55e-98 | 2 |
pulmonary alveolus epithelium | 2.39e-66 | 3 |
alveolus | 2.39e-66 | 3 |
pulmonary lobule | 2.39e-66 | 3 |
lobule | 2.39e-66 | 3 |
alveolus of lung | 2.39e-66 | 3 |
alveolar system | 2.39e-66 | 3 |
pulmonary acinus | 2.39e-66 | 3 |
alveolar sac | 2.39e-66 | 3 |
alveolar wall | 2.39e-66 | 3 |
tracheobronchial tree | 1.22e-14 | 15 |
lower respiratory tract | 1.22e-14 | 15 |
duct | 6.95e-12 | 19 |
respiratory tract epithelium | 6.95e-12 | 19 |
lung epithelium | 6.95e-12 | 19 |
lung | 1.80e-10 | 22 |
simple squamous epithelium | 1.80e-10 | 22 |
respiratory tube | 1.80e-10 | 22 |
respiration organ | 1.80e-10 | 22 |
pair of lungs | 1.80e-10 | 22 |
lung primordium | 1.80e-10 | 22 |
lung bud | 1.80e-10 | 22 |
epithelial sac | 2.15e-09 | 25 |
squamous epithelium | 2.15e-09 | 25 |
sac | 4.34e-09 | 26 |
respiratory system epithelium | 1.52e-08 | 28 |
thoracic cavity element | 2.74e-07 | 34 |
thoracic cavity | 2.74e-07 | 34 |
thoracic segment organ | 4.03e-07 | 35 |
epithelial bud | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.55e-98 | 2 |
non-small cell lung carcinoma | 1.48e-40 | 5 |
bronchus cancer | 1.78e-29 | 7 |
bronchogenic carcinoma | 1.78e-29 | 7 |
lung carcinoma | 2.62e-23 | 9 |
lung cancer | 1.22e-14 | 15 |
respiratory system cancer | 8.02e-14 | 16 |