FFCP PHASE1:Mm9::chr13:43711396..43711413,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=328234|HGNC=|MCL_coexpression_id=1342|UniProt=E0CZ87|association_with_transcript=44bp_to_ENSMUST00000161817_5end|description=CAGE_peak_3_at_Rnf182_5end|id=chr13:43711396..43711413,+|ontology_enrichment_celltype=CL:0000221!4.01e-16!44;CL:0000133!4.01e-16!44;CL:0002319!1.06e-15!43;CL:0000540!9.76e-14!33;CL:0000047!9.76e-14!33;CL:0000031!9.76e-14!33;CL:0000404!9.76e-14!33;CL:0000117!1.47e-13!23;CL:0000337!1.47e-13!23;CL:0000055!3.84e-11!50;CL:0000393!1.25e-09!39;CL:0000211!1.25e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.03e-20,23;CL:0000337,4.03e-20,23;CL:0000221,8.38e-20,44;CL:0000133,8.38e-20,44;CL:0002319,3.90e-19,43;CL:0000540,6.96e-17,33;CL:0000047,6.96e-17,33;CL:0000031,6.96e-17,33;CL:0000404,6.96e-17,33;CL:0000393,5.42e-13,39;CL:0000211,5.42e-13,39;CL:0002321,1.15e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.10e-30!73;UBERON:0005743!6.10e-30!73;UBERON:0000073!2.44e-29!75;UBERON:0001016!2.44e-29!75;UBERON:0004121!8.90e-29!102;UBERON:0000924!8.90e-29!102;UBERON:0006601!8.90e-29!102;UBERON:0001049!3.18e-22!52;UBERON:0005068!3.18e-22!52;UBERON:0006241!3.18e-22!52;UBERON:0007135!3.18e-22!52;UBERON:0000033!3.45e-22!63;UBERON:0000955!2.05e-21!50;UBERON:0006238!2.05e-21!50;UBERON:0002616!8.29e-21!49;UBERON:0002346!1.71e-20!71;UBERON:0003075!1.71e-20!71;UBERON:0007284!1.71e-20!71;UBERON:0003056!7.47e-18!49;UBERON:0002020!5.51e-17!34;UBERON:0003080!3.13e-16!40;UBERON:0002780!1.50e-15!39;UBERON:0001890!1.50e-15!39;UBERON:0006240!1.50e-15!39;UBERON:0002791!2.78e-14!29;UBERON:0003528!2.78e-14!29;UBERON:0001893!2.78e-14!29;UBERON:0000153!1.79e-10!94;UBERON:0000956!4.79e-10!21;UBERON:0001869!4.79e-10!21;UBERON:0000203!4.79e-10!21;UBERON:0007811!2.39e-09!86;UBERON:0002619!5.12e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.42e-34,95;UBERON:0000924,2.42e-34,95;UBERON:0006601,2.42e-34,95;UBERON:0001017,3.11e-34,73;UBERON:0001016,7.59e-33,75;UBERON:0000073,5.89e-29,54;UBERON:0010371,1.37e-27,73;UBERON:0001049,1.14e-26,52;UBERON:0005068,1.14e-26,52;UBERON:0006241,1.14e-26,52;UBERON:0007135,1.14e-26,52;UBERON:0002346,9.22e-25,64;UBERON:0003075,9.22e-25,64;UBERON:0007284,9.22e-25,64;UBERON:0000955,3.65e-22,47;UBERON:0006238,3.65e-22,47;UBERON:0002020,2.43e-21,34;UBERON:0002616,2.92e-21,46;UBERON:0003056,4.25e-17,49;UBERON:0003528,5.06e-17,29;UBERON:0002791,5.06e-17,29;UBERON:0001893,5.06e-17,29;UBERON:0003080,6.83e-17,40;UBERON:0002780,6.68e-16,39;UBERON:0001890,6.68e-16,39;UBERON:0006240,6.68e-16,39;UBERON:0010314,1.71e-14,92;UBERON:0000956,1.99e-11,21;UBERON:0001869,1.99e-11,21;UBERON:0000203,1.99e-11,21;UBERON:0003076,8.45e-11,12;UBERON:0003057,8.45e-11,12;UBERON:0002619,2.79e-08,17;UBERON:0002420,6.22e-07,8;UBERON:0007245,6.22e-07,8;UBERON:0010009,6.22e-07,8;UBERON:0010011,6.22e-07,8;UBERON:0000454,6.22e-07,8|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96222640742402,2.63623419281366,4.08302788055995,1.67983705950435,2.87505128729943,0,0,0,0,0.286533439938757,0,3.03474691289397,1.5869729378161,2.53532561402472,0.338844532069132,0,0.449949858640699,0,0,0.898800331555214,1.53687322128622,2.69592992002042,2.02508907497536,1.89292465216244,1.71390590642282,1.76694832761291,1.46988959057945,1.34183659425531,0.919218786610021,3.30347642998166,3.44755812830007,3.84016333140609,1.97829431595291,3.20206752608434,3.12548022334056,3.62937898701795,1.68828783009504,4.73674568108111,2.06240009831567,3.84403538157578,1.67759501242771,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0,0.35333957451034,1.40843419776681,0,0,0,0,0,0,0,0,0.148442139064825,0.520455980298408,0,0.461230994512117,0.150722640552623,0,0.251333182659351,0,4.916378135277,0,0.323533699894818,0.441683036920787,0.484875253135222,0,22.8369021669007,21.3635640949724,0,0,0,0,3.74476598512057,1.83000241127451,0.879580464790051,1.73824320192276,1.27857728665165,4.36354893575076,2.75810147215188,0.916554274652847,0.746441823660558,0,1.26265113531884,0.520481771850815,0.229902104433473,1.0803727788321,0.90422890701429,0.612328492361951,1.0249097622788,1.12442069471675,1.55222022443409,1.29340795759705,0.756424320671277,1.40760899331159,1.09597866213787,2.22437799380478,0.348252166522167,0.411564272815887,3.18454826909589,0,0,0,0,0.703578179943289,0,0.710234206755631,0.196764231747404,0.462801338662135,0.232533944750408,0.536546802799238,0,0,0.164167464079095,0.162137619091711,0,0.219550115291051,0.134206418760372,9.88362758251398,9.98174740079059,0,0,0.639864751605702,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0.758671603812327,0.456994050438915,1.1270773567308,0.203651327845314,0,0.210407459670956,0.442655759869801,0.295220295959204,0.31399745568275,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0,0.947457058852424,0.977789858652155,0.509235257325564,0,0.502518772325447,0.476087281772027,0,0,0,0,0,0,0,0,0,0.491764273019036,0,4.17431533968259,2.93029216480508,0,0.504941854408746,0,0.390438744296638,0.646270193198397,2.15071918157297,1.11399337041197,1.41538265394416,0.404810701674894,0.876767573733936,0.790575555893047,2.24924921495265,0.567760340833074,2.49291845134157,0.977321756121456,0.989820737835213,0,0.485561272309963,0,0.377210159511796,0,0.614870295887855,0,1.09060118843252,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,0.905510786479282,2.35770738534752,0.532020700926821,1.07021290561242,0.658196082408484,0,1.64270195644597,0.63549621259146,0.220528398054962,1.81374878235628,0.322928853391811,1.08563264870681,2.26807453605959,4.10352249362653,0,2.96680483216816,0.170870880797853,0.206386867963223,0.555583582109135,0,0,0,0,0,0,0,0.949007980743406,0.203319467126849,0.540026704109006,0,0,0.269728692769641,0,0.523511883968059,0,0,0,3.73791365109947,1.15820943319968,0.388902376688095,0.645799117388655,0.337912250981556,0.469428954583016,0.13020438484395,0.314578033277133,0,0,0,0,0.205421914329655,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.579568782096571,0,0.36630324853453,0,0.501572104035363,0.564751842617067,1.38097570952153,1.71868654031819,0.859265911718438,2.05524755931193,0.755393897389701,1.35004500046361,2.2516060161211,1.35942722695261,1.55328093525546,1.24544817101012,0,0.682934423016537,0.486213434136588,1.25767897576789,0.367687016900028,1.33348036680969,1.23621034343337,0.320919209591815,1.51618327058278,0.50695859978048,1.13175804831646,0.749132059759059,0.960377286073039,1.09127391015665,0.476293691283074,0.811190281613988,1.35036454324594,0.412085900803307,0.441596760403192,0.685738504770831,0.887379030796687,0.715308569841963,0.872078499793971,0.564656282491984,0.846146078916765,0.73171189149109,0.263069711437843,1.08643291076689,1.12228454331548,0.949080144993393,0.886540341380071,2.04615521584845,0.77468420592983,0.964533054905707,1.74867404556562,1.16965804222704,0.429742108096597,0.57386499620653,0.220591419119515,0.463735671240843|short_description=p3@Rnf182}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:328234 | |||
|HGNC= | |||
|MCL_coexpression_id=1342 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E0CZ87 | |||
|association_with_transcript=44bp_to_ENSMUST00000161817_5end | |||
|cluster_id=chr13:43711396..43711413,+ | |||
|description=CAGE_peak_3_at_Rnf182_5end | |||
|id=chr13:43711396..43711413,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.01e-16!44;CL:0000133!4.01e-16!44;CL:0002319!1.06e-15!43;CL:0000540!9.76e-14!33;CL:0000047!9.76e-14!33;CL:0000031!9.76e-14!33;CL:0000404!9.76e-14!33;CL:0000117!1.47e-13!23;CL:0000337!1.47e-13!23;CL:0000055!3.84e-11!50;CL:0000393!1.25e-09!39;CL:0000211!1.25e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.03e-20,23;CL:0000337,4.03e-20,23;CL:0000221,8.38e-20,44;CL:0000133,8.38e-20,44;CL:0002319,3.90e-19,43;CL:0000540,6.96e-17,33;CL:0000047,6.96e-17,33;CL:0000031,6.96e-17,33;CL:0000404,6.96e-17,33;CL:0000393,5.42e-13,39;CL:0000211,5.42e-13,39;CL:0002321,1.15e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.10e-30!73;UBERON:0005743!6.10e-30!73;UBERON:0000073!2.44e-29!75;UBERON:0001016!2.44e-29!75;UBERON:0004121!8.90e-29!102;UBERON:0000924!8.90e-29!102;UBERON:0006601!8.90e-29!102;UBERON:0001049!3.18e-22!52;UBERON:0005068!3.18e-22!52;UBERON:0006241!3.18e-22!52;UBERON:0007135!3.18e-22!52;UBERON:0000033!3.45e-22!63;UBERON:0000955!2.05e-21!50;UBERON:0006238!2.05e-21!50;UBERON:0002616!8.29e-21!49;UBERON:0002346!1.71e-20!71;UBERON:0003075!1.71e-20!71;UBERON:0007284!1.71e-20!71;UBERON:0003056!7.47e-18!49;UBERON:0002020!5.51e-17!34;UBERON:0003080!3.13e-16!40;UBERON:0002780!1.50e-15!39;UBERON:0001890!1.50e-15!39;UBERON:0006240!1.50e-15!39;UBERON:0002791!2.78e-14!29;UBERON:0003528!2.78e-14!29;UBERON:0001893!2.78e-14!29;UBERON:0000153!1.79e-10!94;UBERON:0000956!4.79e-10!21;UBERON:0001869!4.79e-10!21;UBERON:0000203!4.79e-10!21;UBERON:0007811!2.39e-09!86;UBERON:0002619!5.12e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.42e-34,95;UBERON:0000924,2.42e-34,95;UBERON:0006601,2.42e-34,95;UBERON:0001017,3.11e-34,73;UBERON:0001016,7.59e-33,75;UBERON:0000073,5.89e-29,54;UBERON:0010371,1.37e-27,73;UBERON:0001049,1.14e-26,52;UBERON:0005068,1.14e-26,52;UBERON:0006241,1.14e-26,52;UBERON:0007135,1.14e-26,52;UBERON:0002346,9.22e-25,64;UBERON:0003075,9.22e-25,64;UBERON:0007284,9.22e-25,64;UBERON:0000955,3.65e-22,47;UBERON:0006238,3.65e-22,47;UBERON:0002020,2.43e-21,34;UBERON:0002616,2.92e-21,46;UBERON:0003056,4.25e-17,49;UBERON:0003528,5.06e-17,29;UBERON:0002791,5.06e-17,29;UBERON:0001893,5.06e-17,29;UBERON:0003080,6.83e-17,40;UBERON:0002780,6.68e-16,39;UBERON:0001890,6.68e-16,39;UBERON:0006240,6.68e-16,39;UBERON:0010314,1.71e-14,92;UBERON:0000956,1.99e-11,21;UBERON:0001869,1.99e-11,21;UBERON:0000203,1.99e-11,21;UBERON:0003076,8.45e-11,12;UBERON:0003057,8.45e-11,12;UBERON:0002619,2.79e-08,17;UBERON:0002420,6.22e-07,8;UBERON:0007245,6.22e-07,8;UBERON:0010009,6.22e-07,8;UBERON:0010011,6.22e-07,8;UBERON:0000454,6.22e-07,8 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96222640742402,2.63623419281366,4.08302788055995,1.67983705950435,2.87505128729943,0,0,0,0,0.286533439938757,0,3.03474691289397,1.5869729378161,2.53532561402472,0.338844532069132,0,0.449949858640699,0,0,0.898800331555214,1.53687322128622,2.69592992002042,2.02508907497536,1.89292465216244,1.71390590642282,1.76694832761291,1.46988959057945,1.34183659425531,0.919218786610021,3.30347642998166,3.44755812830007,3.84016333140609,1.97829431595291,3.20206752608434,3.12548022334056,3.62937898701795,1.68828783009504,4.73674568108111,2.06240009831567,3.84403538157578,1.67759501242771,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0,0.35333957451034,1.40843419776681,0,0,0,0,0,0,0,0,0.148442139064825,0.520455980298408,0,0.461230994512117,0.150722640552623,0,0.251333182659351,0,4.916378135277,0,0.323533699894818,0.441683036920787,0.484875253135222,0,22.8369021669007,21.3635640949724,0,0,0,0,3.74476598512057,1.83000241127451,0.879580464790051,1.73824320192276,1.27857728665165,4.36354893575076,2.75810147215188,0.916554274652847,0.746441823660558,0,1.26265113531884,0.520481771850815,0.229902104433473,1.0803727788321,0.90422890701429,0.612328492361951,1.0249097622788,1.12442069471675,1.55222022443409,1.29340795759705,0.756424320671277,1.40760899331159,1.09597866213787,2.22437799380478,0.348252166522167,0.411564272815887,3.18454826909589,0,0,0,0,0.703578179943289,0,0.710234206755631,0.196764231747404,0.462801338662135,0.232533944750408,0.536546802799238,0,0,0.164167464079095,0.162137619091711,0,0.219550115291051,0.134206418760372,9.88362758251398,9.98174740079059,0,0,0.639864751605702,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0.758671603812327,0.456994050438915,1.1270773567308,0.203651327845314,0,0.210407459670956,0.442655759869801,0.295220295959204,0.31399745568275,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0,0.947457058852424,0.977789858652155,0.509235257325564,0,0.502518772325447,0.476087281772027,0,0,0,0,0,0,0,0,0,0.491764273019036,0,4.17431533968259,2.93029216480508,0,0.504941854408746,0,0.390438744296638,0.646270193198397,2.15071918157297,1.11399337041197,1.41538265394416,0.404810701674894,0.876767573733936,0.790575555893047,2.24924921495265,0.567760340833074,2.49291845134157,0.977321756121456,0.989820737835213,0,0.485561272309963,0,0.377210159511796,0,0.614870295887855,0,1.09060118843252,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,0.905510786479282,2.35770738534752,0.532020700926821,1.07021290561242,0.658196082408484,0,1.64270195644597,0.63549621259146,0.220528398054962,1.81374878235628,0.322928853391811,1.08563264870681,2.26807453605959,4.10352249362653,0,2.96680483216816,0.170870880797853,0.206386867963223,0.555583582109135,0,0,0,0,0,0,0,0.949007980743406,0.203319467126849,0.540026704109006,0,0,0.269728692769641,0,0.523511883968059,0,0,0,3.73791365109947,1.15820943319968,0.388902376688095,0.645799117388655,0.337912250981556,0.469428954583016,0.13020438484395,0.314578033277133,0,0,0,0,0.205421914329655,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.579568782096571,0,0.36630324853453,0,0.501572104035363,0.564751842617067,1.38097570952153,1.71868654031819,0.859265911718438,2.05524755931193,0.755393897389701,1.35004500046361,2.2516060161211,1.35942722695261,1.55328093525546,1.24544817101012,0,0.682934423016537,0.486213434136588,1.25767897576789,0.367687016900028,1.33348036680969,1.23621034343337,0.320919209591815,1.51618327058278,0.50695859978048,1.13175804831646,0.749132059759059,0.960377286073039,1.09127391015665,0.476293691283074,0.811190281613988,1.35036454324594,0.412085900803307,0.441596760403192,0.685738504770831,0.887379030796687,0.715308569841963,0.872078499793971,0.564656282491984,0.846146078916765,0.73171189149109,0.263069711437843,1.08643291076689,1.12228454331548,0.949080144993393,0.886540341380071,2.04615521584845,0.77468420592983,0.964533054905707,1.74867404556562,1.16965804222704,0.429742108096597,0.57386499620653,0.220591419119515,0.463735671240843 | |||
|short_description=p3@Rnf182 | |||
}} |
Revision as of 00:27, 6 August 2015
Short description: | p3@Rnf182 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rnf182_5end |
Coexpression cluster: | MCL_coexpression_mm9:1342 |
Association with transcript: | 44bp_to_ENSMUST00000161817_5end |
EntrezGene: | 328234 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.03e-20 | 23 |
neuroblast (sensu Vertebrata) | 4.03e-20 | 23 |
ectodermal cell | 8.38e-20 | 44 |
neurectodermal cell | 8.38e-20 | 44 |
neural cell | 3.90e-19 | 43 |
neuron | 6.96e-17 | 33 |
neuronal stem cell | 6.96e-17 | 33 |
neuroblast | 6.96e-17 | 33 |
electrically signaling cell | 6.96e-17 | 33 |
electrically responsive cell | 5.42e-13 | 39 |
electrically active cell | 5.42e-13 | 39 |
embryonic cell | 1.15e-08 | 70 |