FFCP PHASE1:Hg19::chr3:188302122..188302144,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4026 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6679 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000487347_5end | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_11_at_LPP_5end | |||
|id=chr3:188302122..188302144,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.69e-18!42;CL:0000860!3.07e-16!45;CL:0002009!3.22e-15!65;CL:0000766!3.69e-15!76;CL:0002194!3.26e-14!63;CL:0000576!3.26e-14!63;CL:0000040!3.26e-14!63;CL:0000559!3.26e-14!63;CL:0000557!2.90e-13!71;CL:0000839!1.08e-12!70;CL:0000763!1.30e-07!112;CL:0000049!1.30e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.36e-20;33!CL:0002057;7.36e-20;33!CL:0000473;3.94e-15;39!CL:0000234;3.94e-15;39!CL:0000576;1.64e-12;48!CL:0000766;2.88e-11;69!CL:0000226;1.60e-07;3!CL:0000842;1.60e-07;3!CL:0000094;3.76e-07;8!CL:0002393;6.26e-07;6!CL:0002397;6.26e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.95e-25,72;CL:0000860,1.38e-24,42;CL:0002057,1.38e-24,42;CL:0000473,1.05e-22,48;CL:0000234,1.05e-22,48;CL:0002194,2.07e-22,59;CL:0000576,2.07e-22,59;CL:0000040,2.07e-22,59;CL:0000559,2.07e-22,59;CL:0002009,1.95e-21,61;CL:0000839,2.96e-19,66;CL:0000557,7.37e-19,67;CL:0000763,5.92e-14,108;CL:0000049,5.92e-14,108;CL:0000738,6.52e-13,136;CL:0002087,1.38e-11,115;CL:0000037,9.39e-09,168;CL:0002031,3.20e-08,120;CL:0000988,7.04e-08,177;CL:0000226,1.17e-07,3;CL:0000842,1.17e-07,3;CL:0002032,2.17e-07,161;CL:0000837,2.17e-07,161;CL:0000094,4.88e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.44e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.08e-20!102;UBERON:0003061!1.08e-20!102;UBERON:0002193!2.09e-18!112;UBERON:0000178!4.05e-13!15;UBERON:0000179!4.05e-13!15;UBERON:0000463!4.05e-13!15;UBERON:0002371!2.77e-12!80;UBERON:0001474!4.41e-11!86;UBERON:0004765!1.06e-10!101;UBERON:0001434!1.06e-10!101;UBERON:0002204!2.35e-09!167;UBERON:0002405!3.54e-08!115;UBERON:0003081!5.84e-08!216;UBERON:0000467!2.14e-07!625;UBERON:0000480!2.74e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.95e-23;15!UBERON:0000179;5.95e-23;15!UBERON:0000463;5.95e-23;15!UBERON:0002390;4.02e-12;32!UBERON:0002193;5.39e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.18e-31,98;UBERON:0003061,2.18e-31,98;UBERON:0002193,2.07e-27,108;UBERON:0000178,4.65e-23,15;UBERON:0000179,4.65e-23,15;UBERON:0000463,4.65e-23,15;UBERON:0002371,1.09e-18,76;UBERON:0001474,9.52e-17,82;UBERON:0003081,1.22e-15,203;UBERON:0004765,1.43e-14,90;UBERON:0002405,7.44e-14,93;UBERON:0001434,1.76e-13,100;UBERON:0000926,8.32e-08,315;UBERON:0004120,8.32e-08,315;UBERON:0006603,8.32e-08,315;UBERON:0002204,7.98e-07,167 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0,0,3.01123735160345,1.50651167513763,0,0,0,1.18009283054671,1.15148819429164,0.77408061658038,0,0.90361775633475,0.739508020333575,0,0,0,5.53995408531877,4.01088894940283,3.03815219002193,0,0,0,0.581592955118259,0,0.242584061187816,0.464858073811369,1.23350366406548,1.85823822537062,2.3015391385772,1.2808035326455,2.83778675866302,1.37898272294647,2.5819387343353,5.41705946377367,0,0.272906150057846,1.12361742222542,2.14258724659632,5.77672248736969,3.19668562899521,0.329851300186716,0,0.852449501065388,2.03146467040009,3.40431134814684,1.86846674698672,0,1.5644487552606,4.99534342821768,0.605399502633369,3.68277635987565,4.43047342417238,0.211255286311942,1.27562579979026,0.209658645508376,0,0.150176892841506,0.32145117339416,0.285012743741249,0.19891667719909,0.547992461293902,0,0,0,0,0,0.574752439954483,0,0,0,0,0.382273228125229,0,3.92355994087075,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,1.24930726552346,0.236777252044017,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0.527008714158756,0,0,0.370784442784429,4.54366351116557,6.09454080547435,4.25465473660369,0.238490624305342,0,0,0.39752481473341,0,0,0,0,0,0.417989933073621,0,0,0,0.402829317109147,0,0,0,0,1.42879565254528,0.673588117878509,1.12611480483322,0,0,0,1.31780417436063,0,0,0,1.01304409331664,0.132409180813219,0.286836620748814,0,0,0,0,0.622422070799533,0.404132016209064,1.14423332179421,0.151357427644931,0,0.468642863667593,0,0,0.149448680551801,0.23486899728753,0.161872944368132,0.421352420106746,1.02077085627447,0.122834317311768,0.723280468230358,0,0,0,0,0.336672227908132,0.125118519871964,1.93944880838928,0,0,0,0,0.179389635688862,0,0.211931901159562,1.50045548042201,0.412210116953756,0.515281080091258,0.558350568994769,0.675105328965065,0.584622030967192,0.504867548488229,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0.773043412653187,0.272746120590835,1.72082757233402,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.98775256867763,0,0.201057944823262,1.29623823221941,0,0,1.44331342025273,0,0,0,0.462985512576611,0.190254152234598,0,0,1.47730203652438,0.936017060556951,0.594524649154913,0,0.671928512795438,0.708875486211932,0.895585227028483,0.290633938513962,0,0,0,0.414656231081544,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.36669142910475,0,0,0,0.26593811658487,0,0,1.41849132023278,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.723906533337896,0,0.537182889719687,0,0.197030760201927,0,0,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,2.99161459204025,4.97298616123243,0,0,0,0,0.356857977594324,0,0.35142424497814,0,0,0,0,0,0.0868836144680828,0,0,2.48121631347465,1.2942852049117,1.60091336705167,0,0,0,0.248107807818777,0,0,0,0.511707249066704,0,0,0,0,0.410635780069046,1.03850885836724,0.232420756919918,0,0.200506470303285,0.0920809889358963,0.114814448164607,0,0,0,0.15403067420883,0,0,0,1.13733384070897,0.510281115829547,0.431831832204279,0,0,0,0,0,0.447749509444357,0.438519753291869,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,1.07834031980251,0.307007349452259,0.275673144969061,0.322260734604821,0.290033387828457,0.255679882248303,0.267096106940212,0,0,0.382838137483752,0,0,0,0,0.308033580176089,0,0,0,0.286249773483982,0,0.632758849437452,0,0,0,0,0,0.539617372749944,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0.709522128141196,0,0,0.379473173765715,0,0.288666338176536,0,0,0,0,0,0,0.229723400206959,26.3872756800728,15.2927441428475,17.659062802399,7.38518503919146,6.17043409629291,21.3996192693597,18.901100303334,20.621254583651,0,0,3.67560323971548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0.511343412510774,0,0.311039587661807,0,0,0,0.0986434056369336,19.1586473877552,2.22273980289274,0,0.463840490809256,0,0,0,0,1.0241410345695,0,0,0,0,0,0,0,1.52581736317083,0.221158519862449,0,0.219385397153973,0,0.41827123283581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.889563386041866,0.247127877893006,0.730953646538188,0.067401132980677,0.802577647298789,0,0.182454789215666,0.391329237864179,0,0.394584402849391,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0,0,0.0969890164884194,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0,0,0,0,0.67952103036807,0.627617077873999,0.407992870545287,0,0.600420288709789,0,0,0,0,0,0,0,0.199679000498991,0,0.446342914883745,0.134366944973453,0,0,0,0,0,0.196854963029498,0.0846733320657845,0.795229689809303,0,0,0,0,0.899895566206002,0.77380195455795,0.0607495566580247,0.335434687599266,0,0.104909176269996,0,1.79287339332845,0.191915197319445,0,1.32418394073086,0,0.542999601753713,0,0.326587360109409,0,0,1.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| |||
|short_description=p11@LPP | |||
}} |
Revision as of 23:14, 21 January 2014
Short description: | p11@LPP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LPP_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000487347_5end |
EntrezGene: | LPP |
HGNC: | 6679 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.95e-25 | 72 |
classical monocyte | 1.38e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.38e-24 | 42 |
defensive cell | 1.05e-22 | 48 |
phagocyte | 1.05e-22 | 48 |
monopoietic cell | 2.07e-22 | 59 |
monocyte | 2.07e-22 | 59 |
monoblast | 2.07e-22 | 59 |
promonocyte | 2.07e-22 | 59 |
macrophage dendritic cell progenitor | 1.95e-21 | 61 |
myeloid lineage restricted progenitor cell | 2.96e-19 | 66 |
granulocyte monocyte progenitor cell | 7.37e-19 | 67 |
myeloid cell | 5.92e-14 | 108 |
common myeloid progenitor | 5.92e-14 | 108 |
leukocyte | 6.52e-13 | 136 |
nongranular leukocyte | 1.38e-11 | 115 |
hematopoietic stem cell | 9.39e-09 | 168 |
hematopoietic lineage restricted progenitor cell | 3.20e-08 | 120 |
hematopoietic cell | 7.04e-08 | 177 |
single nucleate cell | 1.17e-07 | 3 |
mononuclear cell | 1.17e-07 | 3 |
hematopoietic oligopotent progenitor cell | 2.17e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.17e-07 | 161 |
granulocyte | 4.88e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.18e-31 | 98 |
blood island | 2.18e-31 | 98 |
hemolymphoid system | 2.07e-27 | 108 |
blood | 4.65e-23 | 15 |
haemolymphatic fluid | 4.65e-23 | 15 |
organism substance | 4.65e-23 | 15 |
bone marrow | 1.09e-18 | 76 |
bone element | 9.52e-17 | 82 |
lateral plate mesoderm | 1.22e-15 | 203 |
skeletal element | 1.43e-14 | 90 |
immune system | 7.44e-14 | 93 |
skeletal system | 1.76e-13 | 100 |
mesoderm | 8.32e-08 | 315 |
mesoderm-derived structure | 8.32e-08 | 315 |
presumptive mesoderm | 8.32e-08 | 315 |
musculoskeletal system | 7.98e-07 | 167 |