FFCP PHASE1:Hg19::chr3:18480217..18480239,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6304 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000487699_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_3_at_SATB1_5end | |||
|id=chr3:18480217..18480239,- | |||
|ontology_enrichment_celltype=CL:0000791!1.14e-19!18;CL:0000789!1.14e-19!18;CL:0002420!1.14e-19!18;CL:0002419!1.14e-19!18;CL:0000790!1.14e-19!18;CL:0000084!7.04e-18!25;CL:0000827!7.04e-18!25;CL:0000838!1.24e-14!52;CL:0000625!3.29e-14!11;CL:0000542!3.57e-14!53;CL:0000051!3.57e-14!53;CL:0002087!8.18e-14!119;CL:0000738!2.82e-13!140;CL:0000037!7.08e-13!172;CL:0000566!7.08e-13!172;CL:0000988!3.47e-11!182;CL:0002031!6.86e-11!124;CL:0002032!8.59e-11!165;CL:0000837!8.59e-11!165;CL:0000624!1.33e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.03e-30;18!CL:0000789;5.03e-30;18!CL:0002419;5.03e-30;18!CL:0000084;5.75e-26;25!CL:0000625;3.44e-21;11!CL:0000624;1.61e-12;6!CL:0000542;1.63e-10;53!CL:0000226;5.12e-07;3!CL:0000842;5.12e-07;3!CL:0000898;7.23e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.46e-30,18;CL:0000789,3.46e-30,18;CL:0002420,3.46e-30,18;CL:0002419,3.46e-30,18;CL:0000790,3.46e-30,18;CL:0000084,4.18e-26,25;CL:0000827,4.18e-26,25;CL:0000625,2.55e-21,11;CL:0000838,5.95e-18,52;CL:0000542,1.78e-17,53;CL:0000051,1.78e-17,53;CL:0000624,1.46e-12,6;CL:0002087,3.40e-10,115;CL:0000738,1.28e-08,136;CL:0002031,3.72e-07,120;CL:0000037,4.64e-07,168;CL:0000226,4.97e-07,3;CL:0000842,4.97e-07,3;CL:0000898,6.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;5.03e-30;18!CL:0000051;1.63e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.35e-20!115;UBERON:0001950!2.34e-17!20;UBERON:0002619!7.86e-17!22;UBERON:0000956!3.81e-14!25;UBERON:0000203!3.81e-14!25;UBERON:0001893!1.35e-13!34;UBERON:0002020!2.22e-13!34;UBERON:0003528!2.22e-13!34;UBERON:0002791!8.61e-13!33;UBERON:0001869!2.00e-12!32;UBERON:0002780!3.81e-11!41;UBERON:0001890!3.81e-11!41;UBERON:0006240!3.81e-11!41;UBERON:0000178!3.84e-11!15;UBERON:0000179!3.84e-11!15;UBERON:0000463!3.84e-11!15;UBERON:0003080!1.02e-10!42;UBERON:0001049!1.79e-10!57;UBERON:0005068!1.79e-10!57;UBERON:0006241!1.79e-10!57;UBERON:0007135!1.79e-10!57;UBERON:0002616!2.79e-08!59;UBERON:0000200!1.38e-07!6;UBERON:0000955!2.94e-07!69;UBERON:0006238!2.94e-07!69;UBERON:0001017!4.18e-07!82;UBERON:0002390!5.35e-07!102;UBERON:0003061!5.35e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.35e-19;20!UBERON:0002619;1.62e-17;22!UBERON:0000178;2.98e-17;15!UBERON:0000179;2.98e-17;15!UBERON:0000463;2.98e-17;15!UBERON:0000956;5.25e-15;25!UBERON:0000203;5.25e-15;25!UBERON:0001869;1.56e-12;32!UBERON:0001893;1.93e-11;34!UBERON:0002791;3.33e-11;32!UBERON:0000200;4.09e-11;6!UBERON:0002390;5.01e-10;32!UBERON:0003528;5.38e-10;34!UBERON:0002020;5.38e-10;34!UBERON:0002021;1.17e-09;5!UBERON:0002780;4.25e-07;41!UBERON:0001890;4.25e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.84e-19,20;UBERON:0002619,2.14e-17,22;UBERON:0000178,2.88e-17,15;UBERON:0000179,2.88e-17,15;UBERON:0000463,2.88e-17,15;UBERON:0000956,6.69e-15,25;UBERON:0000203,6.69e-15,25;UBERON:0001869,5.03e-14,32;UBERON:0001893,5.90e-13,34;UBERON:0002791,2.21e-12,32;UBERON:0003528,1.99e-11,34;UBERON:0002020,1.99e-11,34;UBERON:0000200,5.60e-11,6;UBERON:0002780,4.87e-10,41;UBERON:0001890,4.87e-10,41;UBERON:0003080,4.87e-10,41;UBERON:0006240,4.87e-10,41;UBERON:0002021,1.34e-09,5;UBERON:0007023,4.41e-08,114;UBERON:0000073,7.21e-07,53;UBERON:0002616,7.21e-07,53 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53531759238885,0.309632246632152,0,0,0,3.17615522379237,0,0.880801318004542,2.76997704265939,0.802177789880567,0.868043482863407,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0.309706370895104,0,0.512321413058201,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0.306083892370903,0.962787081228281,0,0,0.199463657621632,0,0,1.70215567407342,0,0,0,0,0.605399502633369,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0.954053754535364,1.1384259382189,0,0.382273228125229,0,0.560508562981536,0,11.0157471263747,5.89516144123747,8.22405995998037,75.2339229258051,18.2516469314811,18.9379122293893,23.3792074089494,22.1706809201495,2.65145316727353,2.65840673500345,3.5204502289452,19.5979719180283,11.0550445425897,10.0307121808242,6.90875044464621,29.2701116592403,27.8778738744674,27.021623637061,16.7256838087963,21.8687031406303,4.98186641682498,3.09264700934367,6.32549230048757,6.68987370080603,4.55758417699493,5.70271226669025,15.0575119077773,17.9181255616186,6.24653632761729,8.52398107358461,6.56902397536837,3.62892137804518,1.87208137048455,4.92402973201517,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,0,3.68615252830205,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.69904584686553,2.15627574859517,2.82354679815446,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44364894042395,5.60856922128404,4.48255742774466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,4.05958087385735,6.117097657139,1.70894156152249,9.05280746739598,10.2840568271549,6.48473311192717,4.32025149790492,3.96562588147135,0,0,0,0,0,38.2743117214468,0.159426272728822,0,0.191505370132367,0,0,0.561594356226918,5.02116293873023,0,0,0.169291777801603,0,0.201799707191048,0.425846237690326,0,10.4461859864876,12.9732142577601,14.3490261872241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0.398495976502139,0.276283915531148,1.25966373927138,0,0,0,0,0,5.11572370226872,0.295930216910801,2.3948309234694,0,2.90799823828566,3.8034920246359,0,0,0,0,0,0,0,1.72371686620732,0.291604613383254,0,0,0,0,0,0,1.31631238292384,0,0,0,0,0,0,0,0,0,0,0,1.09886179476517,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,1.53036380815245,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,4.11520173713212,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,3.88797162611358,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.387848869084652,0.13223260174269,0,0,0.427149650270779,0.314408610199332,0.414239055347196,0,0,3.77557054980777,0,0,0,0,0,0,4.43034089983493,4.27091927156871,2.253436752717,0,0,0.124192805882767,0,0,0,0,0,13.1133773625927,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35039341457942,0,0,0,0,0,0,5.79963447979297,0,0,0,0,0,0,2.81367616868034,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,1.79841830270087,7.08482881627925,3.67157875831448,2.66651273512982,1.26035848110859,4.21859240031729,1.61475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,2.566428215499,0.781078098613847,3.9270491335225,3.61470118105269,0,0,0,0,0,0,0,0,0.455324382702595,0,0,0,0.271878931907327,3.485956998831,0,0,0.078493092850514,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.77407108916684,0.231522474323834,0,9.40634592723046,0,0,0.588925401344836,0,0.4226557275834,0,0.939839179798536,1.61144719933943,0,0,0,0,0,0,0.286679166302903,1.10440093535229,3.26359152916391,1.30905207102113,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,2.3806443146374,115.807915335959,98.4504968732306,0,0,0,0,0,1.48174516632093,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,9.45986829877823,0 | |||
|short_description=p3@SATB1 | |||
}} |
Revision as of 17:46, 21 January 2014
Short description: | p3@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SATB1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000487699_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.46e-30 | 18 |
alpha-beta T cell | 3.46e-30 | 18 |
immature T cell | 3.46e-30 | 18 |
mature T cell | 3.46e-30 | 18 |
immature alpha-beta T cell | 3.46e-30 | 18 |
T cell | 4.18e-26 | 25 |
pro-T cell | 4.18e-26 | 25 |
CD8-positive, alpha-beta T cell | 2.55e-21 | 11 |
lymphoid lineage restricted progenitor cell | 5.95e-18 | 52 |
lymphocyte | 1.78e-17 | 53 |
common lymphoid progenitor | 1.78e-17 | 53 |
CD4-positive, alpha-beta T cell | 1.46e-12 | 6 |
nongranular leukocyte | 3.40e-10 | 115 |
leukocyte | 1.28e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 3.72e-07 | 120 |
hematopoietic stem cell | 4.64e-07 | 168 |
single nucleate cell | 4.97e-07 | 3 |
mononuclear cell | 4.97e-07 | 3 |
naive T cell | 6.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.84e-19 | 20 |
regional part of cerebral cortex | 2.14e-17 | 22 |
blood | 2.88e-17 | 15 |
haemolymphatic fluid | 2.88e-17 | 15 |
organism substance | 2.88e-17 | 15 |
cerebral cortex | 6.69e-15 | 25 |
pallium | 6.69e-15 | 25 |
cerebral hemisphere | 5.03e-14 | 32 |
telencephalon | 5.90e-13 | 34 |
regional part of telencephalon | 2.21e-12 | 32 |
brain grey matter | 1.99e-11 | 34 |
gray matter | 1.99e-11 | 34 |
gyrus | 5.60e-11 | 6 |
regional part of forebrain | 4.87e-10 | 41 |
forebrain | 4.87e-10 | 41 |
anterior neural tube | 4.87e-10 | 41 |
future forebrain | 4.87e-10 | 41 |
occipital lobe | 1.34e-09 | 5 |
adult organism | 4.41e-08 | 114 |
regional part of nervous system | 7.21e-07 | 53 |
regional part of brain | 7.21e-07 | 53 |