FFCP PHASE1:Mm9::chr12:56937319..56937348,+: Difference between revisions
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{{FFCP|EntrezGene=52592|HGNC=|MCL_coexpression_id=52|UniProt=Q3U1T3|association_with_transcript=-4bp_to_ENSMUST00000012220,ENSMUST00000059250,NM_001037756,uc007noz.1,uc007npa.1_5end|description=CAGE_peak_2_at_Brms1l_5end|id=chr12:56937319..56937348,+|ontology_enrichment_celltype=CL:0000117!9.34e-11!23;CL:0000337!9.34e-11!23;CL:0000540!3.39e-08!33;CL:0000047!3.39e-08!33;CL:0000031!3.39e-08!33;CL:0000404!3.39e-08!33;CL:0000221!3.58e-07!44;CL:0000133!3.58e-07!44;CL:0002319!5.37e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,4.35e-11,23;CL:0000337,4.35e-11,23;CL:0000540,3.61e-08,33;CL:0000047,3.61e-08,33;CL:0000031,3.61e-08,33;CL:0000404,3.61e-08,33;CL:0000221,5.25e-07,44;CL:0000133,5.25e-07,44;CL:0002319,7.95e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.57e-18!75;UBERON:0001016!7.57e-18!75;UBERON:0000955!2.49e-17!50;UBERON:0006238!2.49e-17!50;UBERON:0001017!2.69e-17!73;UBERON:0005743!2.69e-17!73;UBERON:0001049!4.70e-17!52;UBERON:0005068!4.70e-17!52;UBERON:0006241!4.70e-17!52;UBERON:0007135!4.70e-17!52;UBERON:0002616!1.15e-16!49;UBERON:0002346!1.20e-16!71;UBERON:0003075!1.20e-16!71;UBERON:0007284!1.20e-16!71;UBERON:0000033!2.33e-16!63;UBERON:0004121!5.05e-16!102;UBERON:0000924!5.05e-16!102;UBERON:0006601!5.05e-16!102;UBERON:0002020!9.61e-16!34;UBERON:0002791!4.30e-14!29;UBERON:0003528!4.30e-14!29;UBERON:0001893!4.30e-14!29;UBERON:0003080!3.69e-13!40;UBERON:0003056!4.53e-13!49;UBERON:0002780!1.43e-12!39;UBERON:0001890!1.43e-12!39;UBERON:0006240!1.43e-12!39;UBERON:0007811!6.23e-10!86;UBERON:0000153!1.31e-09!94;UBERON:0000956!1.33e-09!21;UBERON:0001869!1.33e-09!21;UBERON:0000203!1.33e-09!21;UBERON:0002619!5.39e-08!17;UBERON:0000025!1.60e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.72e-19,54;UBERON:0010314,1.13e-18,92;UBERON:0001016,1.24e-17,75;UBERON:0001049,2.97e-17,52;UBERON:0005068,2.97e-17,52;UBERON:0006241,2.97e-17,52;UBERON:0007135,2.97e-17,52;UBERON:0001017,4.57e-17,73;UBERON:0002020,2.25e-16,34;UBERON:0002346,5.00e-16,64;UBERON:0003075,5.00e-16,64;UBERON:0007284,5.00e-16,64;UBERON:0000955,1.89e-15,47;UBERON:0006238,1.89e-15,47;UBERON:0004121,4.10e-15,95;UBERON:0000924,4.10e-15,95;UBERON:0006601,4.10e-15,95;UBERON:0002616,8.62e-15,46;UBERON:0003528,1.15e-14,29;UBERON:0002791,1.15e-14,29;UBERON:0001893,1.15e-14,29;UBERON:0010371,1.46e-14,73;UBERON:0003080,2.43e-13,40;UBERON:0003056,2.85e-13,49;UBERON:0002780,9.80e-13,39;UBERON:0001890,9.80e-13,39;UBERON:0006240,9.80e-13,39;UBERON:0000956,5.24e-10,21;UBERON:0001869,5.24e-10,21;UBERON:0000203,5.24e-10,21;UBERON:0002619,2.44e-08,17;UBERON:0000025,3.25e-07,114;UBERON:0002021,7.36e-07,10;UBERON:0000411,7.36e-07,10;UBERON:0001950,7.36e-07,10|phase1_expression=2.5623815536767,0.348975407639361,0,1.51232105653415,1.00179145989269,1.00727563147134,1.16806320297763,0.903863264091034,0,0.234064526321993,0.68487187290202,0.957265907944037,0.342401459862411,0.699363219351979,1.33243904726265,3.84703008040669,1.39912375625629,1.26184866143295,0.685572168028694,0.42438965179803,2.72138528483423,0.695036658406197,2.61199789138935,0.799962113967033,0.22940928106717,0.57423196411502,0.430761996159075,0.430942465371778,0.190023419456374,0,1.10865255327652,0.635030673459631,1.23012957516914,0,0.577703239502549,0.664938581433969,0.816677425049476,0.418531630736908,0,0,0,0,0.971020706062307,0.377690453926732,0.608261587317087,1.46837401729345,0.782391344348039,1.74420125104357,0.439372365468944,2.13872888981712,1.53985063787899,1.43752564364972,0.838913030288682,1.45072428402269,0.672187598284928,1.28629718017973,1.14613375975503,2.06268836910977,3.43937983461316,1.5869729378161,1.90149421051854,1.0165335962074,0.889294796111139,0.449949858640699,0,0.7104801149461,0.898800331555214,1.53687322128622,3.42175720617976,2.56511282830212,2.52389953621658,3.42781181284564,3.97563373712904,3.91970557487853,3.45043695665651,3.67687514644008,9.91042928994498,8.55505165170758,9.21639199537461,2.76961204233407,5.94669683415663,4.16730696445408,8.93385596804419,6.75315132038016,4.5839474333043,1.76777151284201,3.41692033917847,2.60959224155421,2.87759534666099,1.88928900266964,0.579728977403356,0.860423876981386,0.679971333707751,0,0,0.448026887097336,0.561777680527007,3.06774580640504,2.07828803682295,2.82671659608272,2.11265129665021,5.13305909657271,17.8363667794652,35.5533351576666,1.08245520505607,0.760079596425296,0.505524445014783,0.5709193985953,1.29468941823586,2.52351636410202,1.56136794089522,1.21786191324856,2.07553947530453,2.41156224884196,1.52865319276416,2.01066546127481,0.247194967734374,0.86759614151947,1.76922110389975,1.13236794963186,1.32504911076236,0.484875253135222,1.86391761218122,6.14839673724249,3.97948742945565,0.255457055208591,0,0.599902730993408,0.381210681219194,5.84183493678809,4.57500602818627,5.15182843662744,8.51739168942155,6.64860189058859,6.85700547046548,5.19172041816825,1.52759045775474,1.49288364732112,1.76905930903572,1.47309299120532,1.69156575851515,1.839216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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:52592 | |||
|HGNC= | |||
|MCL_coexpression_id=52 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3U1T3 | |||
|association_with_transcript=-4bp_to_ENSMUST00000012220,ENSMUST00000059250,NM_001037756,uc007noz.1,uc007npa.1_5end | |||
|cluster_id=chr12:56937319..56937348,+ | |||
|description=CAGE_peak_2_at_Brms1l_5end | |||
|id=chr12:56937319..56937348,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.34e-11!23;CL:0000337!9.34e-11!23;CL:0000540!3.39e-08!33;CL:0000047!3.39e-08!33;CL:0000031!3.39e-08!33;CL:0000404!3.39e-08!33;CL:0000221!3.58e-07!44;CL:0000133!3.58e-07!44;CL:0002319!5.37e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.35e-11,23;CL:0000337,4.35e-11,23;CL:0000540,3.61e-08,33;CL:0000047,3.61e-08,33;CL:0000031,3.61e-08,33;CL:0000404,3.61e-08,33;CL:0000221,5.25e-07,44;CL:0000133,5.25e-07,44;CL:0002319,7.95e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.57e-18!75;UBERON:0001016!7.57e-18!75;UBERON:0000955!2.49e-17!50;UBERON:0006238!2.49e-17!50;UBERON:0001017!2.69e-17!73;UBERON:0005743!2.69e-17!73;UBERON:0001049!4.70e-17!52;UBERON:0005068!4.70e-17!52;UBERON:0006241!4.70e-17!52;UBERON:0007135!4.70e-17!52;UBERON:0002616!1.15e-16!49;UBERON:0002346!1.20e-16!71;UBERON:0003075!1.20e-16!71;UBERON:0007284!1.20e-16!71;UBERON:0000033!2.33e-16!63;UBERON:0004121!5.05e-16!102;UBERON:0000924!5.05e-16!102;UBERON:0006601!5.05e-16!102;UBERON:0002020!9.61e-16!34;UBERON:0002791!4.30e-14!29;UBERON:0003528!4.30e-14!29;UBERON:0001893!4.30e-14!29;UBERON:0003080!3.69e-13!40;UBERON:0003056!4.53e-13!49;UBERON:0002780!1.43e-12!39;UBERON:0001890!1.43e-12!39;UBERON:0006240!1.43e-12!39;UBERON:0007811!6.23e-10!86;UBERON:0000153!1.31e-09!94;UBERON:0000956!1.33e-09!21;UBERON:0001869!1.33e-09!21;UBERON:0000203!1.33e-09!21;UBERON:0002619!5.39e-08!17;UBERON:0000025!1.60e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.72e-19,54;UBERON:0010314,1.13e-18,92;UBERON:0001016,1.24e-17,75;UBERON:0001049,2.97e-17,52;UBERON:0005068,2.97e-17,52;UBERON:0006241,2.97e-17,52;UBERON:0007135,2.97e-17,52;UBERON:0001017,4.57e-17,73;UBERON:0002020,2.25e-16,34;UBERON:0002346,5.00e-16,64;UBERON:0003075,5.00e-16,64;UBERON:0007284,5.00e-16,64;UBERON:0000955,1.89e-15,47;UBERON:0006238,1.89e-15,47;UBERON:0004121,4.10e-15,95;UBERON:0000924,4.10e-15,95;UBERON:0006601,4.10e-15,95;UBERON:0002616,8.62e-15,46;UBERON:0003528,1.15e-14,29;UBERON:0002791,1.15e-14,29;UBERON:0001893,1.15e-14,29;UBERON:0010371,1.46e-14,73;UBERON:0003080,2.43e-13,40;UBERON:0003056,2.85e-13,49;UBERON:0002780,9.80e-13,39;UBERON:0001890,9.80e-13,39;UBERON:0006240,9.80e-13,39;UBERON:0000956,5.24e-10,21;UBERON:0001869,5.24e-10,21;UBERON:0000203,5.24e-10,21;UBERON:0002619,2.44e-08,17;UBERON:0000025,3.25e-07,114;UBERON:0002021,7.36e-07,10;UBERON:0000411,7.36e-07,10;UBERON:0001950,7.36e-07,10 | |||
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| |||
|short_description=p2@Brms1l | |||
}} |
Revision as of 03:02, 5 August 2015
Short description: | p2@Brms1l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Brms1l_5end |
Coexpression cluster: | MCL_coexpression_mm9:52 |
Association with transcript: | -4bp_to_ENSMUST00000012220, ENSMUST00000059250, NM_001037756, uc007noz.1, uc007npa.1_5end |
EntrezGene: | 52592 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.35e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.35e-11 | 23 |
neuron | 3.61e-08 | 33 |
neuronal stem cell | 3.61e-08 | 33 |
neuroblast | 3.61e-08 | 33 |
electrically signaling cell | 3.61e-08 | 33 |
ectodermal cell | 5.25e-07 | 44 |
neurectodermal cell | 5.25e-07 | 44 |
neural cell | 7.95e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 9.72e-19 | 54 |
structure with developmental contribution from neural crest | 1.13e-18 | 92 |
nervous system | 1.24e-17 | 75 |
neural tube | 2.97e-17 | 52 |
neural rod | 2.97e-17 | 52 |
future spinal cord | 2.97e-17 | 52 |
neural keel | 2.97e-17 | 52 |
central nervous system | 4.57e-17 | 73 |
gray matter | 2.25e-16 | 34 |
neurectoderm | 5.00e-16 | 64 |
neural plate | 5.00e-16 | 64 |
presumptive neural plate | 5.00e-16 | 64 |
brain | 1.89e-15 | 47 |
future brain | 1.89e-15 | 47 |
ectoderm-derived structure | 4.10e-15 | 95 |
ectoderm | 4.10e-15 | 95 |
presumptive ectoderm | 4.10e-15 | 95 |
regional part of brain | 8.62e-15 | 46 |
brain grey matter | 1.15e-14 | 29 |
regional part of telencephalon | 1.15e-14 | 29 |
telencephalon | 1.15e-14 | 29 |
ecto-epithelium | 1.46e-14 | 73 |
anterior neural tube | 2.43e-13 | 40 |
pre-chordal neural plate | 2.85e-13 | 49 |
regional part of forebrain | 9.80e-13 | 39 |
forebrain | 9.80e-13 | 39 |
future forebrain | 9.80e-13 | 39 |
cerebral cortex | 5.24e-10 | 21 |
cerebral hemisphere | 5.24e-10 | 21 |
pallium | 5.24e-10 | 21 |
regional part of cerebral cortex | 2.44e-08 | 17 |
tube | 3.25e-07 | 114 |
occipital lobe | 7.36e-07 | 10 |
visual cortex | 7.36e-07 | 10 |
neocortex | 7.36e-07 | 10 |