FFCP PHASE1:Mm9::chr11:98603160..98603171,+: Difference between revisions
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{{FFCP|EntrezGene=21833|HGNC=|MCL_coexpression_id=794|UniProt=P63058,A3KFN7|association_with_transcript=-15bp_to_ENSMUST00000103139,NM_178060,uc007lhd.1,uc007lhe.1,uc007lhf.1_5end|description=CAGE_peak_3_at_Thra_5end|id=chr11:98603160..98603171,+|ontology_enrichment_celltype=CL:0000117!2.01e-14!23;CL:0000337!2.01e-14!23;CL:0000540!1.79e-13!33;CL:0000047!1.79e-13!33;CL:0000031!1.79e-13!33;CL:0000404!1.79e-13!33;CL:0000221!1.49e-12!44;CL:0000133!1.49e-12!44;CL:0000393!2.39e-12!39;CL:0000211!2.39e-12!39;CL:0002319!2.89e-12!43;CL:0000055!4.75e-11!50;CL:0002321!4.68e-10!70;CL:0000220!4.68e-10!70|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-14,23;CL:0000337,1.83e-14,23;CL:0000540,1.64e-13,33;CL:0000047,1.64e-13,33;CL:0000031,1.64e-13,33;CL:0000404,1.64e-13,33;CL:0000221,1.27e-12,44;CL:0000133,1.27e-12,44;CL:0000393,2.22e-12,39;CL:0000211,2.22e-12,39;CL:0002319,2.47e-12,43;CL:0002321,3.18e-10,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.88e-23!73;UBERON:0005743!5.88e-23!73;UBERON:0000073!3.36e-21!75;UBERON:0001016!3.36e-21!75;UBERON:0002020!1.58e-19!34;UBERON:0001049!2.42e-19!52;UBERON:0005068!2.42e-19!52;UBERON:0006241!2.42e-19!52;UBERON:0007135!2.42e-19!52;UBERON:0002616!7.33e-18!49;UBERON:0000955!7.62e-18!50;UBERON:0006238!7.62e-18!50;UBERON:0002791!3.11e-16!29;UBERON:0003528!3.11e-16!29;UBERON:0001893!3.11e-16!29;UBERON:0002346!1.20e-15!71;UBERON:0003075!1.20e-15!71;UBERON:0007284!1.20e-15!71;UBERON:0003080!2.83e-15!40;UBERON:0004121!2.84e-15!102;UBERON:0000924!2.84e-15!102;UBERON:0006601!2.84e-15!102;UBERON:0000033!3.87e-15!63;UBERON:0002780!4.51e-15!39;UBERON:0001890!4.51e-15!39;UBERON:0006240!4.51e-15!39;UBERON:0003056!3.28e-13!49;UBERON:0000956!5.48e-12!21;UBERON:0001869!5.48e-12!21;UBERON:0000203!5.48e-12!21;UBERON:0002619!9.55e-10!17;UBERON:0000025!1.51e-07!114;UBERON:0002021!9.03e-07!10;UBERON:0000411!9.03e-07!10;UBERON:0001950!9.03e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.05e-23,73;UBERON:0001016,2.68e-21,75;UBERON:0000073,3.32e-21,54;UBERON:0002020,1.39e-19,34;UBERON:0001049,2.13e-19,52;UBERON:0005068,2.13e-19,52;UBERON:0006241,2.13e-19,52;UBERON:0007135,2.13e-19,52;UBERON:0002346,3.11e-17,64;UBERON:0003075,3.11e-17,64;UBERON:0007284,3.11e-17,64;UBERON:0010314,5.63e-17,92;UBERON:0003528,2.80e-16,29;UBERON:0002791,2.80e-16,29;UBERON:0001893,2.80e-16,29;UBERON:0004121,3.67e-16,95;UBERON:0000924,3.67e-16,95;UBERON:0006601,3.67e-16,95;UBERON:0002616,3.69e-16,46;UBERON:0000955,3.81e-16,47;UBERON:0006238,3.81e-16,47;UBERON:0010371,2.41e-15,73;UBERON:0003080,2.57e-15,40;UBERON:0002780,4.09e-15,39;UBERON:0001890,4.09e-15,39;UBERON:0006240,4.09e-15,39;UBERON:0003056,3.02e-13,49;UBERON:0000956,5.09e-12,21;UBERON:0001869,5.09e-12,21;UBERON:0000203,5.09e-12,21;UBERON:0002619,9.01e-10,17;UBERON:0000025,1.28e-07,114;UBERON:0002021,8.70e-07,10;UBERON:0000411,8.70e-07,10;UBERON:0001950,8.70e-07,10|phase1_expression=7.68714466103011,5.58360652222978,5.0049916332849,9.0739263392049,11.0197060588196,4.36486106970913,1.16806320297763,0.645616617207881,0.140788722151667,0.468129052643987,0,0.0797721589953364,0.684802919724823,1.04904482902797,0.999329285446988,0.607425802169478,1.39912375625629,0.157731082679119,0.548457734422955,0,5.6128571499706,1.39007331681239,0.522399578277871,3.99981056983517,2.06468352960453,4.59385571292016,6.46142994238612,2.80112602491656,2.66032787238923,8.82105454159758,1.33038306393183,3.81018404075779,2.46025915033828,0,6.06588401477677,6.15068187826422,6.32925004413344,0.418531630736908,1.5626706890476,0.523523743973798,1.17646297606203,0.683045484958446,0.971020706062307,5.03587271902309,3.04130793658544,2.38610777810186,13.3006528539167,3.48840250208714,7.90870257844099,5.8328969722285,2.65974201088189,1.43752564364972,0.335565212115473,0,1.00828139742739,4.3734104126111,6.5902691185914,3.09403255366465,18.0061650165042,21.6886301501533,6.97214543856797,5.42151251310611,0.889294796111139,0.899899717281399,1.97773272513395,2.1314403448383,14.9800055259202,30.7374644257244,37.2245708187435,28.7562648646501,24.1873705554089,32.2785612376298,26.283356373242,17.8836566853833,24.1530586965956,9.19218786610021,17.6185409599022,20.8130361078856,21.8121277223866,19.3872842963385,37.509933876988,17.7110545989298,23.451371916116,11.8180148106653,22.3085441754143,25.9273155216828,21.9252388430619,21.063137378259,0.37863096666592,1.5870027622425,9.27566363845369,1.72084775396277,0.679971333707751,1.61910957491345,0.649776417447669,0,1.82577746171277,6.13549161281008,13.2490862347463,5.3000936176551,6.76048414928066,23.0987659345772,45.8649431471962,42.6640021891999,0,0.253359865475099,0.505524445014783,2.16949371466214,0,1.48442139064825,3.64319186208885,4.26251669636998,2.7673859670727,3.3158980921577,3.05730638552832,5.15233024451669,1.73036477414062,2.02439099687876,0.884610551949874,6.95597454773859,2.87093973998512,5.33362778448744,1.86391761218122,3.80615036115011,11.7290155815535,4.34276993854605,1.55759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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:21833 | |||
|HGNC= | |||
|MCL_coexpression_id=794 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P63058,uniprot:A3KFN7 | |||
|association_with_transcript=-15bp_to_ENSMUST00000103139,NM_178060,uc007lhd.1,uc007lhe.1,uc007lhf.1_5end | |||
|cluster_id=chr11:98603160..98603171,+ | |||
|description=CAGE_peak_3_at_Thra_5end | |||
|id=chr11:98603160..98603171,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.01e-14!23;CL:0000337!2.01e-14!23;CL:0000540!1.79e-13!33;CL:0000047!1.79e-13!33;CL:0000031!1.79e-13!33;CL:0000404!1.79e-13!33;CL:0000221!1.49e-12!44;CL:0000133!1.49e-12!44;CL:0000393!2.39e-12!39;CL:0000211!2.39e-12!39;CL:0002319!2.89e-12!43;CL:0000055!4.75e-11!50;CL:0002321!4.68e-10!70;CL:0000220!4.68e-10!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-14,23;CL:0000337,1.83e-14,23;CL:0000540,1.64e-13,33;CL:0000047,1.64e-13,33;CL:0000031,1.64e-13,33;CL:0000404,1.64e-13,33;CL:0000221,1.27e-12,44;CL:0000133,1.27e-12,44;CL:0000393,2.22e-12,39;CL:0000211,2.22e-12,39;CL:0002319,2.47e-12,43;CL:0002321,3.18e-10,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.88e-23!73;UBERON:0005743!5.88e-23!73;UBERON:0000073!3.36e-21!75;UBERON:0001016!3.36e-21!75;UBERON:0002020!1.58e-19!34;UBERON:0001049!2.42e-19!52;UBERON:0005068!2.42e-19!52;UBERON:0006241!2.42e-19!52;UBERON:0007135!2.42e-19!52;UBERON:0002616!7.33e-18!49;UBERON:0000955!7.62e-18!50;UBERON:0006238!7.62e-18!50;UBERON:0002791!3.11e-16!29;UBERON:0003528!3.11e-16!29;UBERON:0001893!3.11e-16!29;UBERON:0002346!1.20e-15!71;UBERON:0003075!1.20e-15!71;UBERON:0007284!1.20e-15!71;UBERON:0003080!2.83e-15!40;UBERON:0004121!2.84e-15!102;UBERON:0000924!2.84e-15!102;UBERON:0006601!2.84e-15!102;UBERON:0000033!3.87e-15!63;UBERON:0002780!4.51e-15!39;UBERON:0001890!4.51e-15!39;UBERON:0006240!4.51e-15!39;UBERON:0003056!3.28e-13!49;UBERON:0000956!5.48e-12!21;UBERON:0001869!5.48e-12!21;UBERON:0000203!5.48e-12!21;UBERON:0002619!9.55e-10!17;UBERON:0000025!1.51e-07!114;UBERON:0002021!9.03e-07!10;UBERON:0000411!9.03e-07!10;UBERON:0001950!9.03e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.05e-23,73;UBERON:0001016,2.68e-21,75;UBERON:0000073,3.32e-21,54;UBERON:0002020,1.39e-19,34;UBERON:0001049,2.13e-19,52;UBERON:0005068,2.13e-19,52;UBERON:0006241,2.13e-19,52;UBERON:0007135,2.13e-19,52;UBERON:0002346,3.11e-17,64;UBERON:0003075,3.11e-17,64;UBERON:0007284,3.11e-17,64;UBERON:0010314,5.63e-17,92;UBERON:0003528,2.80e-16,29;UBERON:0002791,2.80e-16,29;UBERON:0001893,2.80e-16,29;UBERON:0004121,3.67e-16,95;UBERON:0000924,3.67e-16,95;UBERON:0006601,3.67e-16,95;UBERON:0002616,3.69e-16,46;UBERON:0000955,3.81e-16,47;UBERON:0006238,3.81e-16,47;UBERON:0010371,2.41e-15,73;UBERON:0003080,2.57e-15,40;UBERON:0002780,4.09e-15,39;UBERON:0001890,4.09e-15,39;UBERON:0006240,4.09e-15,39;UBERON:0003056,3.02e-13,49;UBERON:0000956,5.09e-12,21;UBERON:0001869,5.09e-12,21;UBERON:0000203,5.09e-12,21;UBERON:0002619,9.01e-10,17;UBERON:0000025,1.28e-07,114;UBERON:0002021,8.70e-07,10;UBERON:0000411,8.70e-07,10;UBERON:0001950,8.70e-07,10 | |||
|phase1_expression=7.68714466103011,5.58360652222978,5.0049916332849,9.0739263392049,11.0197060588196,4.36486106970913,1.16806320297763,0.645616617207881,0.140788722151667,0.468129052643987,0,0.0797721589953364,0.684802919724823,1.04904482902797,0.999329285446988,0.607425802169478,1.39912375625629,0.157731082679119,0.548457734422955,0,5.6128571499706,1.39007331681239,0.522399578277871,3.99981056983517,2.06468352960453,4.59385571292016,6.46142994238612,2.80112602491656,2.66032787238923,8.82105454159758,1.33038306393183,3.81018404075779,2.46025915033828,0,6.06588401477677,6.15068187826422,6.32925004413344,0.418531630736908,1.5626706890476,0.523523743973798,1.17646297606203,0.683045484958446,0.971020706062307,5.03587271902309,3.04130793658544,2.38610777810186,13.3006528539167,3.48840250208714,7.90870257844099,5.8328969722285,2.65974201088189,1.43752564364972,0.335565212115473,0,1.00828139742739,4.3734104126111,6.5902691185914,3.09403255366465,18.0061650165042,21.6886301501533,6.97214543856797,5.42151251310611,0.889294796111139,0.899899717281399,1.97773272513395,2.1314403448383,14.9800055259202,30.7374644257244,37.2245708187435,28.7562648646501,24.1873705554089,32.2785612376298,26.283356373242,17.8836566853833,24.1530586965956,9.19218786610021,17.6185409599022,20.8130361078856,21.8121277223866,19.3872842963385,37.509933876988,17.7110545989298,23.451371916116,11.8180148106653,22.3085441754143,25.9273155216828,21.9252388430619,21.063137378259,0.37863096666592,1.5870027622425,9.27566363845369,1.72084775396277,0.679971333707751,1.61910957491345,0.649776417447669,0,1.82577746171277,6.13549161281008,13.2490862347463,5.3000936176551,6.76048414928066,23.0987659345772,45.8649431471962,42.6640021891999,0,0.253359865475099,0.505524445014783,2.16949371466214,0,1.48442139064825,3.64319186208885,4.26251669636998,2.7673859670727,3.3158980921577,3.05730638552832,5.15233024451669,1.73036477414062,2.02439099687876,0.884610551949874,6.95597454773859,2.87093973998512,5.33362778448744,1.86391761218122,3.80615036115011,11.7290155815535,4.34276993854605,1.55759661857696,2.99951365496704,2.28726408731516,6.14141621559773,5.94750783664214,24.12563560567,7.47444576826789,14.8314965251592,8.72709787150152,12.1680947300818,6.61955865027056,2.61254638281195,0.252722758433675,1.68353484709179,1.69156575851515,1.14951052216736,3.06105620669094,6.0281927134286,6.19132142277083,5.25266253167884,6.27801554550183,3.62184719034622,0.862271971731369,1.70195472151037,2.28736461413134,2.41115305670332,3.61461423993277,1.39300866608867,5.35033554660653,4.77682240364384,1.40442637462647,2.05878325691772,1.70498099637356,3.10688658803253,4.92504725960302,3.06105504483725,1.65721314909647,4.13204886669548,4.78228049950873,7.44108623201305,5.633741429392,5.3712057488898,7.5697530960201,6.40253109908471,6.24229833503089,5.99419948443863,4.17145219052996,4.2946054003319,9.88362758251398,32.4149528994746,4.62586296177317,1.05780226665418,2.77274725695804,3.0190767341857,2.83508414908605,3.22693639397348,2.66853652613844,2.28270751335071,5.69434873853414,7.24675400785648,8.04272668160862,6.16765063327568,8.57841983324129,0.898819408654221,3.24207074812041,6.96994456390285,2.0863469104839,3.08470984046268,2.25415471346161,3.25842124552503,1.93952487167626,3.36651935473529,4.48979413582227,2.95220295959204,3.45397201251025,4.81248939295022,0.592905254174298,1.33476084572875,0.786235980452812,1.57403478669398,1.21716072833102,1.68824011826692,0.763877555344259,0.287696137450811,2.2698931748505,1.09824565275233,0,2.97712758134803,1.24815069245824,2.27320990152401,0.179397413521912,1.92977408545347,1.10851914099963,2.08440552947533,2.11854469374634,2.71592137240301,5.16318546234705,4.52266895092903,4.52282917683426,5.85400943573396,5.67486518782288,3.98636441367795,6.218735977642,5.57135270033509,5.87128938344045,4.62876987460837,1.50791283939272,0.54390568381871,0.983528546038072,1.37968373152366,4.97706828962155,7.73597131508541,3.77050374366353,4.29200576247434,4.73262329124385,4.68526493155966,4.09304455692318,3.82350076724083,3.34198011123591,4.52922449262132,5.66734982344852,6.13737301613755,5.53402889125133,4.81981974632711,1.70328102249922,5.52003371368491,5.70104357737516,2.3095817216155,5.30980553359851,2.91336763385978,5.13950046840077,5.84675747243284,3.2483208216885,4.61152721915891,4.9101375701962,5.45300594216258,4.9909632973861,3.16036757935816,2.10837217149998,3.09406629744561,3.06395645178409,2.34079422240703,2.8458910432206,3.85806663056866,2.30542303734956,8.38333442729732,4.27827453565514,9.74287837166718,0.469343416127421,0.21183207086382,0.882113592219848,1.81374878235628,3.22928853391811,3.79971427047382,4.8942661041286,3.11867709515616,8.45294426226567,5.00648315428376,0.512612642393558,4.74689796315412,2.22233432843654,1.31857919903284,1.91371918809435,1.83022538565218,2.20971958992012,1.53946597556024,2.07299960706636,0,1.58167996790568,2.84647253977588,4.32021363287205,4.59994251231831,5.24070152990826,4.45052343069908,5.04186079924549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| |||
|short_description=p3@Thra | |||
}} |
Revision as of 12:41, 4 August 2015
Short description: | p3@Thra |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Thra_5end |
Coexpression cluster: | MCL_coexpression_mm9:794 |
Association with transcript: | -15bp_to_ENSMUST00000103139, NM_178060, uc007lhd.1, uc007lhe.1, uc007lhf.1_5end |
EntrezGene: | 21833 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.83e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.83e-14 | 23 |
neuron | 1.64e-13 | 33 |
neuronal stem cell | 1.64e-13 | 33 |
neuroblast | 1.64e-13 | 33 |
electrically signaling cell | 1.64e-13 | 33 |
ectodermal cell | 1.27e-12 | 44 |
neurectodermal cell | 1.27e-12 | 44 |
electrically responsive cell | 2.22e-12 | 39 |
electrically active cell | 2.22e-12 | 39 |
neural cell | 2.47e-12 | 43 |
embryonic cell | 3.18e-10 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.05e-23 | 73 |
nervous system | 2.68e-21 | 75 |
regional part of nervous system | 3.32e-21 | 54 |
gray matter | 1.39e-19 | 34 |
neural tube | 2.13e-19 | 52 |
neural rod | 2.13e-19 | 52 |
future spinal cord | 2.13e-19 | 52 |
neural keel | 2.13e-19 | 52 |
neurectoderm | 3.11e-17 | 64 |
neural plate | 3.11e-17 | 64 |
presumptive neural plate | 3.11e-17 | 64 |
structure with developmental contribution from neural crest | 5.63e-17 | 92 |
brain grey matter | 2.80e-16 | 29 |
regional part of telencephalon | 2.80e-16 | 29 |
telencephalon | 2.80e-16 | 29 |
ectoderm-derived structure | 3.67e-16 | 95 |
ectoderm | 3.67e-16 | 95 |
presumptive ectoderm | 3.67e-16 | 95 |
regional part of brain | 3.69e-16 | 46 |
brain | 3.81e-16 | 47 |
future brain | 3.81e-16 | 47 |
ecto-epithelium | 2.41e-15 | 73 |
anterior neural tube | 2.57e-15 | 40 |
regional part of forebrain | 4.09e-15 | 39 |
forebrain | 4.09e-15 | 39 |
future forebrain | 4.09e-15 | 39 |
pre-chordal neural plate | 3.02e-13 | 49 |
cerebral cortex | 5.09e-12 | 21 |
cerebral hemisphere | 5.09e-12 | 21 |
pallium | 5.09e-12 | 21 |
regional part of cerebral cortex | 9.01e-10 | 17 |
tube | 1.28e-07 | 114 |
occipital lobe | 8.70e-07 | 10 |
visual cortex | 8.70e-07 | 10 |
neocortex | 8.70e-07 | 10 |