FFCP PHASE1:Hg19::chr3:101498075..101498102,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91775 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28238 | |||
|TSSclassifier=strong | |||
|UniProt=C9K0A9 | |||
|association_with_transcript=0bp_to_ENST00000474165_5end | |||
|description=CAGE_peak_3_at_FAM55C_5end | |||
|id=chr3:101498075..101498102,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.98e-08!18;CL:0000789!3.98e-08!18;CL:0002420!3.98e-08!18;CL:0002419!3.98e-08!18;CL:0000790!3.98e-08!18;CL:0000625!7.15e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.21e-08;18!CL:0000789;2.21e-08;18!CL:0002419;2.21e-08;18!CL:0000625;6.18e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.43e-08,18;CL:0000789,3.43e-08,18;CL:0002420,3.43e-08,18;CL:0002419,3.43e-08,18;CL:0000790,3.43e-08,18;CL:0000625,6.33e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;2.21e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!9.50e-25!59;UBERON:0001049!6.25e-24!57;UBERON:0005068!6.25e-24!57;UBERON:0006241!6.25e-24!57;UBERON:0007135!6.25e-24!57;UBERON:0005743!9.94e-23!86;UBERON:0001017!5.96e-22!82;UBERON:0000073!1.25e-21!94;UBERON:0001016!1.25e-21!94;UBERON:0007023!1.69e-21!115;UBERON:0003075!1.11e-20!86;UBERON:0007284!1.11e-20!86;UBERON:0000955!2.61e-20!69;UBERON:0006238!2.61e-20!69;UBERON:0002780!2.27e-19!41;UBERON:0001890!2.27e-19!41;UBERON:0006240!2.27e-19!41;UBERON:0002346!4.98e-19!90;UBERON:0003080!5.02e-19!42;UBERON:0001893!6.59e-17!34;UBERON:0002020!7.54e-17!34;UBERON:0003528!7.54e-17!34;UBERON:0003056!1.90e-16!61;UBERON:0002791!2.85e-16!33;UBERON:0001869!1.41e-15!32;UBERON:0000153!6.01e-15!129;UBERON:0007811!6.01e-15!129;UBERON:0000033!7.21e-14!123;UBERON:0000956!7.31e-12!25;UBERON:0000203!7.31e-12!25;UBERON:0002619!1.23e-11!22;UBERON:0001950!1.14e-10!20;UBERON:0004121!2.04e-10!169;UBERON:0000924!8.73e-10!173;UBERON:0006601!8.73e-10!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.02e-14;34!UBERON:0002020;1.02e-14;34!UBERON:0001893;1.41e-14;34!UBERON:0001869;2.47e-14;32!UBERON:0002791;2.55e-14;32!UBERON:0002780;3.39e-14;41!UBERON:0001890;3.39e-14;41!UBERON:0000073;2.95e-13;53!UBERON:0002616;2.95e-13;53!UBERON:0000956;5.93e-12;25!UBERON:0000203;5.93e-12;25!UBERON:0002619;9.18e-12;22!UBERON:0001950;9.12e-11;20!UBERON:0000955;3.32e-09;68!UBERON:0001017;1.05e-08;75!UBERON:0001016;4.83e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.80e-24,56;UBERON:0005068,1.80e-24,56;UBERON:0006241,1.80e-24,56;UBERON:0007135,1.80e-24,56;UBERON:0003075,1.16e-23,82;UBERON:0007284,1.16e-23,82;UBERON:0000073,1.88e-23,53;UBERON:0002616,1.88e-23,53;UBERON:0001017,2.99e-22,81;UBERON:0002346,1.38e-21,86;UBERON:0007023,1.85e-21,114;UBERON:0001016,4.77e-21,89;UBERON:0000955,1.30e-20,68;UBERON:0006238,1.30e-20,68;UBERON:0002780,1.52e-19,41;UBERON:0001890,1.52e-19,41;UBERON:0003080,1.52e-19,41;UBERON:0006240,1.52e-19,41;UBERON:0010314,1.41e-18,132;UBERON:0003056,2.22e-17,61;UBERON:0001893,4.65e-17,34;UBERON:0003528,5.33e-17,34;UBERON:0002020,5.33e-17,34;UBERON:0002791,9.68e-16,32;UBERON:0001869,1.02e-15,32;UBERON:0010371,1.87e-14,104;UBERON:0000956,5.79e-12,25;UBERON:0000203,5.79e-12,25;UBERON:0002619,9.80e-12,22;UBERON:0001950,9.29e-11,20;UBERON:0004121,9.89e-11,171;UBERON:0000924,9.89e-11,171;UBERON:0006601,9.89e-11,171 | |||
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| |||
|short_description=p3@FAM55C | |||
}} |
Revision as of 20:15, 21 January 2014
Short description: | p3@FAM55C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FAM55C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000474165_5end |
EntrezGene: | FAM55C |
HGNC: | 28238 |
UniProt: | C9K0A9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.43e-08 | 18 |
alpha-beta T cell | 3.43e-08 | 18 |
immature T cell | 3.43e-08 | 18 |
mature T cell | 3.43e-08 | 18 |
immature alpha-beta T cell | 3.43e-08 | 18 |
CD8-positive, alpha-beta T cell | 6.33e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.80e-24 | 56 |
neural rod | 1.80e-24 | 56 |
future spinal cord | 1.80e-24 | 56 |
neural keel | 1.80e-24 | 56 |
neural plate | 1.16e-23 | 82 |
presumptive neural plate | 1.16e-23 | 82 |
regional part of nervous system | 1.88e-23 | 53 |
regional part of brain | 1.88e-23 | 53 |
central nervous system | 2.99e-22 | 81 |
neurectoderm | 1.38e-21 | 86 |
adult organism | 1.85e-21 | 114 |
nervous system | 4.77e-21 | 89 |
brain | 1.30e-20 | 68 |
future brain | 1.30e-20 | 68 |
regional part of forebrain | 1.52e-19 | 41 |
forebrain | 1.52e-19 | 41 |
anterior neural tube | 1.52e-19 | 41 |
future forebrain | 1.52e-19 | 41 |
structure with developmental contribution from neural crest | 1.41e-18 | 132 |
pre-chordal neural plate | 2.22e-17 | 61 |
telencephalon | 4.65e-17 | 34 |
brain grey matter | 5.33e-17 | 34 |
gray matter | 5.33e-17 | 34 |
regional part of telencephalon | 9.68e-16 | 32 |
cerebral hemisphere | 1.02e-15 | 32 |
ecto-epithelium | 1.87e-14 | 104 |
cerebral cortex | 5.79e-12 | 25 |
pallium | 5.79e-12 | 25 |
regional part of cerebral cortex | 9.80e-12 | 22 |
neocortex | 9.29e-11 | 20 |
ectoderm-derived structure | 9.89e-11 | 171 |
ectoderm | 9.89e-11 | 171 |
presumptive ectoderm | 9.89e-11 | 171 |