FFCP PHASE1:Mm9::chr11:60988483..60988512,-: Difference between revisions
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{{FFCP|EntrezGene=216825|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=18bp_to_ENSMUST00000174220_5end|description=CAGE_peak_2_at_Usp22_5end|id=chr11:60988483..60988512,-|ontology_enrichment_celltype=CL:0000540!3.73e-19!33;CL:0000047!3.73e-19!33;CL:0000031!3.73e-19!33;CL:0000404!3.73e-19!33;CL:0000221!2.68e-15!44;CL:0000133!2.68e-15!44;CL:0002319!3.73e-15!43;CL:0000393!4.30e-15!39;CL:0000211!4.30e-15!39;CL:0000117!4.68e-15!23;CL:0000337!4.68e-15!23;CL:0000055!1.97e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.73e-19,33;CL:0000047,3.73e-19,33;CL:0000031,3.73e-19,33;CL:0000404,3.73e-19,33;CL:0000221,2.68e-15,44;CL:0000133,2.68e-15,44;CL:0002319,3.73e-15,43;CL:0000393,4.30e-15,39;CL:0000211,4.30e-15,39;CL:0000117,4.68e-15,23;CL:0000337,4.68e-15,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.48e-25!73;UBERON:0005743!9.48e-25!73;UBERON:0000073!1.35e-24!75;UBERON:0001016!1.35e-24!75;UBERON:0004121!2.58e-21!102;UBERON:0000924!2.58e-21!102;UBERON:0006601!2.58e-21!102;UBERON:0002346!4.95e-18!71;UBERON:0003075!4.95e-18!71;UBERON:0007284!4.95e-18!71;UBERON:0001049!7.29e-17!52;UBERON:0005068!7.29e-17!52;UBERON:0006241!7.29e-17!52;UBERON:0007135!7.29e-17!52;UBERON:0003056!3.00e-16!49;UBERON:0002020!4.05e-16!34;UBERON:0000033!4.15e-16!63;UBERON:0000955!2.69e-15!50;UBERON:0006238!2.69e-15!50;UBERON:0002616!3.96e-15!49;UBERON:0000153!6.23e-15!94;UBERON:0003080!2.18e-14!40;UBERON:0002780!4.70e-14!39;UBERON:0001890!4.70e-14!39;UBERON:0006240!4.70e-14!39;UBERON:0007811!4.94e-13!86;UBERON:0002791!5.32e-13!29;UBERON:0003528!5.32e-13!29;UBERON:0001893!5.32e-13!29;UBERON:0000956!1.27e-08!21;UBERON:0001869!1.27e-08!21;UBERON:0000203!1.27e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.48e-25,73;UBERON:0001016,1.35e-24,75;UBERON:0004121,5.54e-23,95;UBERON:0000924,5.54e-23,95;UBERON:0006601,5.54e-23,95;UBERON:0002346,3.32e-20,64;UBERON:0003075,3.32e-20,64;UBERON:0007284,3.32e-20,64;UBERON:0010371,1.83e-18,73;UBERON:0000073,3.27e-18,54;UBERON:0001049,7.29e-17,52;UBERON:0005068,7.29e-17,52;UBERON:0006241,7.29e-17,52;UBERON:0007135,7.29e-17,52;UBERON:0003056,3.00e-16,49;UBERON:0002020,4.05e-16,34;UBERON:0003080,2.18e-14,40;UBERON:0002780,4.70e-14,39;UBERON:0001890,4.70e-14,39;UBERON:0006240,4.70e-14,39;UBERON:0000955,8.47e-14,47;UBERON:0006238,8.47e-14,47;UBERON:0002616,1.24e-13,46;UBERON:0003528,5.32e-13,29;UBERON:0002791,5.32e-13,29;UBERON:0001893,5.32e-13,29;UBERON:0010314,3.66e-11,92;UBERON:0000956,1.27e-08,21;UBERON:0001869,1.27e-08,21;UBERON:0000203,1.27e-08,21|phase1_expression=25.1433689954527,9.42233600626275,8.18998630901165,9.0739263392049,10.0179145989269,14.2697381125106,15.6520469199002,9.29687928779349,48.572109142325,52.1963893698045,5.82141091966717,5.82336760665956,7.01922992717943,6.90621179110079,3.66420737997229,1.61980213911861,0.699561878128147,6.78243655520211,7.81552271552711,6.36584477697045,9.77997836737302,29.7872853602656,16.7167865048919,9.91953021319121,7.79991555628378,9.76194338995534,8.18447792702242,7.11055067863434,6.84084310042946,6.30075324399827,8.86922042621219,2.54012269383853,3.07532393792285,0,13.5760261283099,8.97667084935859,13.0668388007916,14.2300754450549,6.2506827561904,3.66466620781659,7.64700934440319,10.9287277593351,7.2826552954673,13.09326906946,12.3679856087808,15.7850206859046,15.6478268869608,12.4274339136855,11.8630538676615,11.665793944457,15.5384928004152,17.2503077237966,6.20795642413625,21.7608642603403,17.1407837562657,12.0911934936895,10.601737277734,9.7977697532714,103.788344420974,138.595636569273,100.779193157482,23.3802727127701,17.7858959222228,7.64914759689189,8.89979726310277,8.5257613793532,25.4660093940644,17.6740420447915,87.4103431760467,101.524465625431,92.5429829946081,63.7001695220482,58.309294811226,84.6411422575332,87.986142394741,117.660004686083,48.450987639731,39.3277001302378,39.6304855801108,107.487324500108,104.112938419542,75.5324387307302,29.8725808931478,45.5837714125661,47.0618603152575,72.7732606119959,61.0774510628152,94.3181195876021,18.4014649799637,23.2760405128899,8.40607017234866,0.860423876981386,12.2394840067395,6.47643829965381,5.19821133958135,7.16843019355737,6.17955448579708,13.8048561288227,5.97507810586598,8.48014978824817,25.9151892389092,8.98285341900225,10.1922095882658,21.3320010945999,19.9171757730317,22.5490280272838,24.2651733607096,6.73684890342454,6.99132285847364,9.20341262201914,20.6447538851702,20.3991870469135,16.8349312996923,13.565037649736,19.7549027987984,8.67099480174761,7.91023896749996,4.04878199375753,4.42305275974937,10.0295446967394,5.30019644304944,7.75800405016355,5.59175283654366,15.517382241612,20.7352239745321,11.240110429178,27.4376635118557,20.9965955847693,20.3312363316904,32.0551968326321,39.8025524452205,142.868998352327,33.7219181173016,36.0558794835766,33.4538751740892,41.2092808192104,27.8021463311363,8.45967400148633,11.8779696463827,7.15502310014011,34.8722787140046,37.2441409182226,39.793730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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:216825 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=18bp_to_ENSMUST00000174220_5end | |||
|cluster_id=chr11:60988483..60988512,- | |||
|description=CAGE_peak_2_at_Usp22_5end | |||
|id=chr11:60988483..60988512,- | |||
|ontology_enrichment_celltype=CL:0000540!3.73e-19!33;CL:0000047!3.73e-19!33;CL:0000031!3.73e-19!33;CL:0000404!3.73e-19!33;CL:0000221!2.68e-15!44;CL:0000133!2.68e-15!44;CL:0002319!3.73e-15!43;CL:0000393!4.30e-15!39;CL:0000211!4.30e-15!39;CL:0000117!4.68e-15!23;CL:0000337!4.68e-15!23;CL:0000055!1.97e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.73e-19,33;CL:0000047,3.73e-19,33;CL:0000031,3.73e-19,33;CL:0000404,3.73e-19,33;CL:0000221,2.68e-15,44;CL:0000133,2.68e-15,44;CL:0002319,3.73e-15,43;CL:0000393,4.30e-15,39;CL:0000211,4.30e-15,39;CL:0000117,4.68e-15,23;CL:0000337,4.68e-15,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.48e-25!73;UBERON:0005743!9.48e-25!73;UBERON:0000073!1.35e-24!75;UBERON:0001016!1.35e-24!75;UBERON:0004121!2.58e-21!102;UBERON:0000924!2.58e-21!102;UBERON:0006601!2.58e-21!102;UBERON:0002346!4.95e-18!71;UBERON:0003075!4.95e-18!71;UBERON:0007284!4.95e-18!71;UBERON:0001049!7.29e-17!52;UBERON:0005068!7.29e-17!52;UBERON:0006241!7.29e-17!52;UBERON:0007135!7.29e-17!52;UBERON:0003056!3.00e-16!49;UBERON:0002020!4.05e-16!34;UBERON:0000033!4.15e-16!63;UBERON:0000955!2.69e-15!50;UBERON:0006238!2.69e-15!50;UBERON:0002616!3.96e-15!49;UBERON:0000153!6.23e-15!94;UBERON:0003080!2.18e-14!40;UBERON:0002780!4.70e-14!39;UBERON:0001890!4.70e-14!39;UBERON:0006240!4.70e-14!39;UBERON:0007811!4.94e-13!86;UBERON:0002791!5.32e-13!29;UBERON:0003528!5.32e-13!29;UBERON:0001893!5.32e-13!29;UBERON:0000956!1.27e-08!21;UBERON:0001869!1.27e-08!21;UBERON:0000203!1.27e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.48e-25,73;UBERON:0001016,1.35e-24,75;UBERON:0004121,5.54e-23,95;UBERON:0000924,5.54e-23,95;UBERON:0006601,5.54e-23,95;UBERON:0002346,3.32e-20,64;UBERON:0003075,3.32e-20,64;UBERON:0007284,3.32e-20,64;UBERON:0010371,1.83e-18,73;UBERON:0000073,3.27e-18,54;UBERON:0001049,7.29e-17,52;UBERON:0005068,7.29e-17,52;UBERON:0006241,7.29e-17,52;UBERON:0007135,7.29e-17,52;UBERON:0003056,3.00e-16,49;UBERON:0002020,4.05e-16,34;UBERON:0003080,2.18e-14,40;UBERON:0002780,4.70e-14,39;UBERON:0001890,4.70e-14,39;UBERON:0006240,4.70e-14,39;UBERON:0000955,8.47e-14,47;UBERON:0006238,8.47e-14,47;UBERON:0002616,1.24e-13,46;UBERON:0003528,5.32e-13,29;UBERON:0002791,5.32e-13,29;UBERON:0001893,5.32e-13,29;UBERON:0010314,3.66e-11,92;UBERON:0000956,1.27e-08,21;UBERON:0001869,1.27e-08,21;UBERON:0000203,1.27e-08,21 | |||
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| |||
|short_description=p2@Usp22 | |||
}} |
Revision as of 05:51, 6 August 2015
Short description: | p2@Usp22 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Usp22_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 18bp_to_ENSMUST00000174220_5end |
EntrezGene: | 216825 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.73e-19 | 33 |
neuronal stem cell | 3.73e-19 | 33 |
neuroblast | 3.73e-19 | 33 |
electrically signaling cell | 3.73e-19 | 33 |
ectodermal cell | 2.68e-15 | 44 |
neurectodermal cell | 2.68e-15 | 44 |
neural cell | 3.73e-15 | 43 |
electrically responsive cell | 4.30e-15 | 39 |
electrically active cell | 4.30e-15 | 39 |
CNS neuron (sensu Vertebrata) | 4.68e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.68e-15 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.48e-25 | 73 |
nervous system | 1.35e-24 | 75 |
ectoderm-derived structure | 5.54e-23 | 95 |
ectoderm | 5.54e-23 | 95 |
presumptive ectoderm | 5.54e-23 | 95 |
neurectoderm | 3.32e-20 | 64 |
neural plate | 3.32e-20 | 64 |
presumptive neural plate | 3.32e-20 | 64 |
ecto-epithelium | 1.83e-18 | 73 |
regional part of nervous system | 3.27e-18 | 54 |
neural tube | 7.29e-17 | 52 |
neural rod | 7.29e-17 | 52 |
future spinal cord | 7.29e-17 | 52 |
neural keel | 7.29e-17 | 52 |
pre-chordal neural plate | 3.00e-16 | 49 |
gray matter | 4.05e-16 | 34 |
anterior neural tube | 2.18e-14 | 40 |
regional part of forebrain | 4.70e-14 | 39 |
forebrain | 4.70e-14 | 39 |
future forebrain | 4.70e-14 | 39 |
brain | 8.47e-14 | 47 |
future brain | 8.47e-14 | 47 |
regional part of brain | 1.24e-13 | 46 |
brain grey matter | 5.32e-13 | 29 |
regional part of telencephalon | 5.32e-13 | 29 |
telencephalon | 5.32e-13 | 29 |
structure with developmental contribution from neural crest | 3.66e-11 | 92 |
cerebral cortex | 1.27e-08 | 21 |
cerebral hemisphere | 1.27e-08 | 21 |
pallium | 1.27e-08 | 21 |