FFCP PHASE1:Mm9::chr11:3795321..3795332,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=75219|HGNC=|MCL_coexpression_id=2|UniProt=Q8VE01,Q8BWD7|association_with_transcript=78bp_to_ENSMUST00000055931,ENSMUST00000109996,NM_173745,uc007htu.2_5end|description=CAGE_peak_3_at_Dusp18_5end|id=chr11:3795321..3795332,+|ontology_enrichment_celltype=CL:0000221!2.61e-07!44;CL:0000133!2.61e-07!44;CL:0000117!4.37e-07!23;CL:0000337!4.37e-07!23;CL:0002319!7.02e-07!43|ontology_enrichment_celltype_v019_2=CL:0002453,2.84e-15,8;CL:0000333,4.87e-12,10;CL:0000095,4.87e-12,10;CL:0000243,4.87e-12,10;CL:0000123,4.87e-12,10;CL:0000125,4.87e-12,10;CL:0000030,4.87e-12,10;CL:0000339,4.87e-12,10;CL:0000128,1.42e-10,6;CL:0000126,1.42e-10,6;CL:0000127,1.42e-10,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.63e-16!34;UBERON:0001017!5.20e-16!73;UBERON:0005743!5.20e-16!73;UBERON:0000073!9.48e-16!75;UBERON:0001016!9.48e-16!75;UBERON:0000033!1.27e-15!63;UBERON:0004121!1.31e-15!102;UBERON:0000924!1.31e-15!102;UBERON:0006601!1.31e-15!102;UBERON:0002780!1.55e-15!39;UBERON:0001890!1.55e-15!39;UBERON:0006240!1.55e-15!39;UBERON:0001049!1.60e-15!52;UBERON:0005068!1.60e-15!52;UBERON:0006241!1.60e-15!52;UBERON:0007135!1.60e-15!52;UBERON:0003080!2.83e-15!40;UBERON:0002791!3.71e-15!29;UBERON:0003528!3.71e-15!29;UBERON:0001893!3.71e-15!29;UBERON:0000955!4.33e-15!50;UBERON:0006238!4.33e-15!50;UBERON:0002616!6.47e-15!49;UBERON:0003056!9.82e-15!49;UBERON:0000956!9.07e-13!21;UBERON:0001869!9.07e-13!21;UBERON:0000203!9.07e-13!21;UBERON:0002346!1.64e-10!71;UBERON:0003075!1.64e-10!71;UBERON:0007284!1.64e-10!71;UBERON:0002619!2.04e-10!17;UBERON:0002021!4.82e-09!10;UBERON:0000411!4.82e-09!10;UBERON:0001950!4.82e-09!10;UBERON:0000025!4.47e-08!114;UBERON:0004111!1.24e-07!122;UBERON:0000153!7.98e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.99e-32,21;UBERON:0001869,2.99e-32,21;UBERON:0000203,2.99e-32,21;UBERON:0002619,3.57e-31,17;UBERON:0002021,2.84e-29,10;UBERON:0000411,2.84e-29,10;UBERON:0001950,2.84e-29,10;UBERON:0003528,2.40e-22,29;UBERON:0002791,2.40e-22,29;UBERON:0001893,2.40e-22,29;UBERON:0002020,1.60e-18,34;UBERON:0002780,1.11e-15,39;UBERON:0001890,1.11e-15,39;UBERON:0006240,1.11e-15,39;UBERON:0003080,3.36e-15,40;UBERON:0002616,1.58e-14,46;UBERON:0001017,3.63e-14,73;UBERON:0000955,3.89e-14,47;UBERON:0006238,3.89e-14,47;UBERON:0001016,1.17e-13,75;UBERON:0001049,2.08e-12,52;UBERON:0005068,2.08e-12,52;UBERON:0006241,2.08e-12,52;UBERON:0007135,2.08e-12,52;UBERON:0000073,8.28e-12,54;UBERON:0003056,9.54e-12,49;UBERON:0004121,6.19e-11,95;UBERON:0000924,6.19e-11,95;UBERON:0006601,6.19e-11,95;UBERON:0010314,2.66e-10,92;UBERON:0002346,2.25e-09,64;UBERON:0003075,2.25e-09,64;UBERON:0007284,2.25e-09,64;UBERON:0010371,6.79e-09,73;UBERON:0000025,2.18e-07,114|phase1_expression=0.80074423552397,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0.198581902401771,0,0.159992422793407,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,1.52617609466313,1.5378032791413,1.1665793944457,1.1198913730029,1.43752564364972,0,0,0,0.257259436035947,0,0,0.404632921719196,1.5869729378161,0.633831403506179,0,0,0,0.988866362566974,0,1.79760066311043,1.53687322128622,0.829516898467821,1.35005938331691,0.841299845405528,0.285650984403804,0.441737081903227,0.367472397644862,0.383381884072945,0,0,0.383062014255563,0.614426133024974,0.791317726381163,0.731901148819277,0.52091337055676,0.837548997004143,0.56276261003168,0.61119299110724,0.883885756421003,0.569486723196412,0.186399445825301,0.151452386666368,0.0755715601067855,0.579728977403356,0,0,0,0,0,0.421333260395256,0.340860645156116,0.519572009205738,0.70667914902068,0.985903938436763,0,0,0,0.216491041011214,0.253359865475099,1.01104889002957,0,0.258937883647172,0,0.173485326766136,0,0,0,0,0,0.247194967734374,0.289198713839823,0.884610551949874,0.161766849947409,0.220841518460394,0,0,0,0.209446706813455,0.255457055208591,0.599075622529601,0,1.01656181658452,0.149790639404823,0.457500602818626,0.125654352112864,2.08589184230732,2.81287003063364,0.41557608911912,0.486723789203273,0,0.373220911830279,0,0.210441855886474,0.390361328888111,0.229902104433473,0.540186389416048,0.150704817835715,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0.189106080167819,0,0.219195732427575,0.556094498451196,1.39300866608867,0.61734640922383,0,0,0.257347907114715,0.852490498186778,1.24275463521301,0,0.180062061461015,0,0.196764231747404,0.154267112887378,0.465067889500816,0.268273401399619,0.116765342367169,0.329119699826961,1.31333971263276,1.94565142910054,1.75439984910399,0.219550115291051,2.28150911892632,1.47202963994889,1.44066457330998,0,0,0,0.232236671860439,0,0.403367049246685,0.22237804384487,0,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.610953983535943,0.387904974335251,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0.325929952884052,0,0.234690248288502,0.837531287209079,0.476087281772027,0.780534591431195,0.315270288212382,0.221464689648775,0.159454768657487,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0.827810238914197,0.481651769963376,0.586058432961016,0,0,0,0,0,0,0,0,0.404810701674894,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0.18006109403131,0.517434735131018,0.428674070063185,0.709360934569094,0.178368817602071,0.164549020602121,0.608929898229199,0.469343416127421,0.63549621259146,0,1.6488625294148,0.807322133479528,0.482503399425247,0.477489376012546,0.492422699235184,0,0,0.170870880797853,0,0,0,0,0,0.509935289981566,0.279902904647316,1.24379976423981,0,0.316335993581135,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.165306911450672,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0,0,0,0,0,0,0,0.241584120826006,0.288030006257865,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0.358855426437903,0.167884616364078,0,0,0.183151624267265,0,0,3.3885110557024,6.44455331110048,3.43737308063638,3.26521046453006,4.11049511862385,6.0431511791176,6.07520250208625,3.15224842256954,4.98456649882625,3.10656187051092,0.830298780673413,0,0.682934423016537,0.243106717068294,0,0.183843508450014,0.666740183404846,0.206035057238894,0.320919209591815,0.252697211763798,0,0,0.0936415074698824,0.320125762024346,0.114870937911227,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0,0.188218760830661,0,0.914639864363863,0.263069711437843,0.271608227691724,0,0.355905054372522,0.197008964751127,0,0.309873682371932,0.192906610981141,0.499621155875892,0.233931608445408,0.429742108096597,0.57386499620653,0.661774257358546,0|short_description=p3@Dusp18}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:75219 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VE01,uniprot:Q8BWD7 | |||
|association_with_transcript=78bp_to_ENSMUST00000055931,ENSMUST00000109996,NM_173745,uc007htu.2_5end | |||
|cluster_id=chr11:3795321..3795332,+ | |||
|description=CAGE_peak_3_at_Dusp18_5end | |||
|id=chr11:3795321..3795332,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.61e-07!44;CL:0000133!2.61e-07!44;CL:0000117!4.37e-07!23;CL:0000337!4.37e-07!23;CL:0002319!7.02e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,2.84e-15,8;CL:0000333,4.87e-12,10;CL:0000095,4.87e-12,10;CL:0000243,4.87e-12,10;CL:0000123,4.87e-12,10;CL:0000125,4.87e-12,10;CL:0000030,4.87e-12,10;CL:0000339,4.87e-12,10;CL:0000128,1.42e-10,6;CL:0000126,1.42e-10,6;CL:0000127,1.42e-10,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.63e-16!34;UBERON:0001017!5.20e-16!73;UBERON:0005743!5.20e-16!73;UBERON:0000073!9.48e-16!75;UBERON:0001016!9.48e-16!75;UBERON:0000033!1.27e-15!63;UBERON:0004121!1.31e-15!102;UBERON:0000924!1.31e-15!102;UBERON:0006601!1.31e-15!102;UBERON:0002780!1.55e-15!39;UBERON:0001890!1.55e-15!39;UBERON:0006240!1.55e-15!39;UBERON:0001049!1.60e-15!52;UBERON:0005068!1.60e-15!52;UBERON:0006241!1.60e-15!52;UBERON:0007135!1.60e-15!52;UBERON:0003080!2.83e-15!40;UBERON:0002791!3.71e-15!29;UBERON:0003528!3.71e-15!29;UBERON:0001893!3.71e-15!29;UBERON:0000955!4.33e-15!50;UBERON:0006238!4.33e-15!50;UBERON:0002616!6.47e-15!49;UBERON:0003056!9.82e-15!49;UBERON:0000956!9.07e-13!21;UBERON:0001869!9.07e-13!21;UBERON:0000203!9.07e-13!21;UBERON:0002346!1.64e-10!71;UBERON:0003075!1.64e-10!71;UBERON:0007284!1.64e-10!71;UBERON:0002619!2.04e-10!17;UBERON:0002021!4.82e-09!10;UBERON:0000411!4.82e-09!10;UBERON:0001950!4.82e-09!10;UBERON:0000025!4.47e-08!114;UBERON:0004111!1.24e-07!122;UBERON:0000153!7.98e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.99e-32,21;UBERON:0001869,2.99e-32,21;UBERON:0000203,2.99e-32,21;UBERON:0002619,3.57e-31,17;UBERON:0002021,2.84e-29,10;UBERON:0000411,2.84e-29,10;UBERON:0001950,2.84e-29,10;UBERON:0003528,2.40e-22,29;UBERON:0002791,2.40e-22,29;UBERON:0001893,2.40e-22,29;UBERON:0002020,1.60e-18,34;UBERON:0002780,1.11e-15,39;UBERON:0001890,1.11e-15,39;UBERON:0006240,1.11e-15,39;UBERON:0003080,3.36e-15,40;UBERON:0002616,1.58e-14,46;UBERON:0001017,3.63e-14,73;UBERON:0000955,3.89e-14,47;UBERON:0006238,3.89e-14,47;UBERON:0001016,1.17e-13,75;UBERON:0001049,2.08e-12,52;UBERON:0005068,2.08e-12,52;UBERON:0006241,2.08e-12,52;UBERON:0007135,2.08e-12,52;UBERON:0000073,8.28e-12,54;UBERON:0003056,9.54e-12,49;UBERON:0004121,6.19e-11,95;UBERON:0000924,6.19e-11,95;UBERON:0006601,6.19e-11,95;UBERON:0010314,2.66e-10,92;UBERON:0002346,2.25e-09,64;UBERON:0003075,2.25e-09,64;UBERON:0007284,2.25e-09,64;UBERON:0010371,6.79e-09,73;UBERON:0000025,2.18e-07,114 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0.198581902401771,0,0.159992422793407,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,1.52617609466313,1.5378032791413,1.1665793944457,1.1198913730029,1.43752564364972,0,0,0,0.257259436035947,0,0,0.404632921719196,1.5869729378161,0.633831403506179,0,0,0,0.988866362566974,0,1.79760066311043,1.53687322128622,0.829516898467821,1.35005938331691,0.841299845405528,0.285650984403804,0.441737081903227,0.367472397644862,0.383381884072945,0,0,0.383062014255563,0.614426133024974,0.791317726381163,0.731901148819277,0.52091337055676,0.837548997004143,0.56276261003168,0.61119299110724,0.883885756421003,0.569486723196412,0.186399445825301,0.151452386666368,0.0755715601067855,0.579728977403356,0,0,0,0,0,0.421333260395256,0.340860645156116,0.519572009205738,0.70667914902068,0.985903938436763,0,0,0,0.216491041011214,0.253359865475099,1.01104889002957,0,0.258937883647172,0,0.173485326766136,0,0,0,0,0,0.247194967734374,0.289198713839823,0.884610551949874,0.161766849947409,0.220841518460394,0,0,0,0.209446706813455,0.255457055208591,0.599075622529601,0,1.01656181658452,0.149790639404823,0.457500602818626,0.125654352112864,2.08589184230732,2.81287003063364,0.41557608911912,0.486723789203273,0,0.373220911830279,0,0.210441855886474,0.390361328888111,0.229902104433473,0.540186389416048,0.150704817835715,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0.189106080167819,0,0.219195732427575,0.556094498451196,1.39300866608867,0.61734640922383,0,0,0.257347907114715,0.852490498186778,1.24275463521301,0,0.180062061461015,0,0.196764231747404,0.154267112887378,0.465067889500816,0.268273401399619,0.116765342367169,0.329119699826961,1.31333971263276,1.94565142910054,1.75439984910399,0.219550115291051,2.28150911892632,1.47202963994889,1.44066457330998,0,0,0,0.232236671860439,0,0.403367049246685,0.22237804384487,0,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.610953983535943,0.387904974335251,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0.325929952884052,0,0.234690248288502,0.837531287209079,0.476087281772027,0.780534591431195,0.315270288212382,0.221464689648775,0.159454768657487,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0.827810238914197,0.481651769963376,0.586058432961016,0,0,0,0,0,0,0,0,0.404810701674894,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0.18006109403131,0.517434735131018,0.428674070063185,0.709360934569094,0.178368817602071,0.164549020602121,0.608929898229199,0.469343416127421,0.63549621259146,0,1.6488625294148,0.807322133479528,0.482503399425247,0.477489376012546,0.492422699235184,0,0,0.170870880797853,0,0,0,0,0,0.509935289981566,0.279902904647316,1.24379976423981,0,0.316335993581135,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.165306911450672,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0,0,0,0,0,0,0,0.241584120826006,0.288030006257865,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0.358855426437903,0.167884616364078,0,0,0.183151624267265,0,0,3.3885110557024,6.44455331110048,3.43737308063638,3.26521046453006,4.11049511862385,6.0431511791176,6.07520250208625,3.15224842256954,4.98456649882625,3.10656187051092,0.830298780673413,0,0.682934423016537,0.243106717068294,0,0.183843508450014,0.666740183404846,0.206035057238894,0.320919209591815,0.252697211763798,0,0,0.0936415074698824,0.320125762024346,0.114870937911227,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0,0.188218760830661,0,0.914639864363863,0.263069711437843,0.271608227691724,0,0.355905054372522,0.197008964751127,0,0.309873682371932,0.192906610981141,0.499621155875892,0.233931608445408,0.429742108096597,0.57386499620653,0.661774257358546,0 | |||
|short_description=p3@Dusp18 | |||
}} |
Revision as of 21:18, 5 August 2015
Short description: | p3@Dusp18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dusp18_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 78bp_to_ENSMUST00000055931, ENSMUST00000109996, NM_173745, uc007htu.2_5end |
EntrezGene: | 75219 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 2.84e-15 | 8 |
migratory neural crest cell | 4.87e-12 | 10 |
neuron associated cell | 4.87e-12 | 10 |
glial cell (sensu Vertebrata) | 4.87e-12 | 10 |
neuron associated cell (sensu Vertebrata) | 4.87e-12 | 10 |
glial cell | 4.87e-12 | 10 |
glioblast | 4.87e-12 | 10 |
glioblast (sensu Vertebrata) | 4.87e-12 | 10 |
oligodendrocyte | 1.42e-10 | 6 |
macroglial cell | 1.42e-10 | 6 |
astrocyte | 1.42e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.99e-32 | 21 |
cerebral hemisphere | 2.99e-32 | 21 |
pallium | 2.99e-32 | 21 |
regional part of cerebral cortex | 3.57e-31 | 17 |
occipital lobe | 2.84e-29 | 10 |
visual cortex | 2.84e-29 | 10 |
neocortex | 2.84e-29 | 10 |
brain grey matter | 2.40e-22 | 29 |
regional part of telencephalon | 2.40e-22 | 29 |
telencephalon | 2.40e-22 | 29 |
gray matter | 1.60e-18 | 34 |
regional part of forebrain | 1.11e-15 | 39 |
forebrain | 1.11e-15 | 39 |
future forebrain | 1.11e-15 | 39 |
anterior neural tube | 3.36e-15 | 40 |
regional part of brain | 1.58e-14 | 46 |
central nervous system | 3.63e-14 | 73 |
brain | 3.89e-14 | 47 |
future brain | 3.89e-14 | 47 |
nervous system | 1.17e-13 | 75 |
neural tube | 2.08e-12 | 52 |
neural rod | 2.08e-12 | 52 |
future spinal cord | 2.08e-12 | 52 |
neural keel | 2.08e-12 | 52 |
regional part of nervous system | 8.28e-12 | 54 |
pre-chordal neural plate | 9.54e-12 | 49 |
ectoderm-derived structure | 6.19e-11 | 95 |
ectoderm | 6.19e-11 | 95 |
presumptive ectoderm | 6.19e-11 | 95 |
structure with developmental contribution from neural crest | 2.66e-10 | 92 |
neurectoderm | 2.25e-09 | 64 |
neural plate | 2.25e-09 | 64 |
presumptive neural plate | 2.25e-09 | 64 |
ecto-epithelium | 6.79e-09 | 73 |
tube | 2.18e-07 | 114 |