FFCP PHASE1:Hg19::chr2:65593835..65593877,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=200734 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17722 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=8bp_to_ENST00000474228_5end | |||
|coexpression_cluster_id=C1444 | |||
|description=CAGE_peak_4_at_SPRED2_5end | |||
|id=chr2:65593835..65593877,- | |||
|ontology_enrichment_celltype=CL:0000055!2.88e-08!180;CL:0000680!2.07e-07!57;CL:0000056!2.07e-07!57;CL:0000355!2.07e-07!57;CL:0002057!2.49e-07!42;CL:0000359!3.37e-07!32;CL:0000187!6.49e-07!54;CL:0000183!6.65e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.43e-14;33!CL:0002057;8.43e-14;33!CL:0000473;4.09e-11;39!CL:0000234;4.09e-11;39!CL:0000453;3.17e-08;5!CL:0000359;4.93e-07;32!CL:0000990;7.78e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.90e-10,42;CL:0002057,1.90e-10,42;CL:0000473,5.36e-10,48;CL:0000234,5.36e-10,48;CL:0002009,4.26e-09,61;CL:0000557,2.30e-08,67;CL:0000453,3.28e-08,5;CL:0002194,9.85e-08,59;CL:0000576,9.85e-08,59;CL:0000040,9.85e-08,59;CL:0000559,9.85e-08,59;CL:0000723,2.61e-07,433;CL:0000048,4.07e-07,427;CL:0000359,4.26e-07,32;CL:0000839,6.97e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;6.65e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.91e-11!167;UBERON:0000923!1.22e-09!604;UBERON:0005291!1.22e-09!604;UBERON:0006598!1.22e-09!604;UBERON:0002532!1.22e-09!604;UBERON:0002050!1.77e-09!605;UBERON:0005423!1.77e-09!605;UBERON:0001950!4.19e-09!20;UBERON:0000467!4.55e-09!625;UBERON:0000480!6.55e-09!626;UBERON:0000956!8.22e-09!25;UBERON:0000203!8.22e-09!25;UBERON:0002619!1.09e-08!22;UBERON:0000922!1.29e-08!612;UBERON:0000468!3.34e-08!659;UBERON:0000914!1.13e-07!83;UBERON:0002329!1.13e-07!83;UBERON:0003077!1.13e-07!83;UBERON:0003059!1.13e-07!83;UBERON:0007282!1.13e-07!83;UBERON:0009618!1.13e-07!83;UBERON:0007285!1.13e-07!83;UBERON:0000479!1.61e-07!787;UBERON:0000486!1.65e-07!82;UBERON:0001869!2.52e-07!32;UBERON:0004290!6.36e-07!70;UBERON:0001893!9.05e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.61e-15;20!UBERON:0002619;3.60e-15;22!UBERON:0000956;1.07e-12;25!UBERON:0000203;1.07e-12;25!UBERON:0001869;2.87e-10;32!UBERON:0001893;2.22e-09;34!UBERON:0002791;6.44e-09;32!UBERON:0003528;2.99e-08;34!UBERON:0002020;2.99e-08;34!UBERON:0000200;3.74e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,5.55e-16,20;UBERON:0002619,1.12e-15,22;UBERON:0000956,3.97e-13,25;UBERON:0000203,3.97e-13,25;UBERON:0002204,4.79e-12,167;UBERON:0001869,1.06e-11,32;UBERON:0001893,1.20e-10,34;UBERON:0002791,2.60e-10,32;UBERON:0003528,2.27e-09,34;UBERON:0002020,2.27e-09,34;UBERON:0004765,1.08e-08,90;UBERON:0002371,1.26e-08,76;UBERON:0000200,3.73e-08,6;UBERON:0001434,5.93e-08,100;UBERON:0001474,6.51e-08,82;UBERON:0002780,8.11e-08,41;UBERON:0001890,8.11e-08,41;UBERON:0003080,8.11e-08,41;UBERON:0006240,8.11e-08,41;UBERON:0000923,7.46e-07,560;UBERON:0010316,7.46e-07,560;UBERON:0005291,7.46e-07,560;UBERON:0006598,7.46e-07,560;UBERON:0010317,7.46e-07,560;UBERON:0002532,7.46e-07,560 | |||
|phase1_expression=0,0,0,0,0,0,0,10.1075179748293,0,0,0,0.218441372130172,0.263766978228454,1.36142988256051,2.98257638155124,0.672325146451775,0.602694528023977,2.19093027116212,0.975865597581014,0.861847406537515,0.816002764977012,0.313454721478088,0.286235987131057,0.958120975510189,0.251085279189606,0.152826811495903,0.0821005894499457,0,0,0,0.309632246632152,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0.145398238779565,0,0.242584061187816,1.39457422143411,0.411167888021826,1.85823822537062,6.32923263108731,5.89169625016932,6.85798466676897,3.44745680736619,2.5819387343353,2.70852973188684,0.376484679085209,0,0.224723484445085,2.14258724659632,1.92557416245656,2.55734850319616,1.64925650093358,6.58230070151385,2.13112375266347,3.19230162491442,8.5107783703671,7.4738669879469,5.02497330513487,6.77927793946262,9.77349801173025,4.84319602106695,6.2607198117886,10.4432587855492,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,1.51255707462509,0.665188192387692,0.87834785693126,0.654895377488563,0,0.370784442784429,0.97364218096405,1.0447784237956,1.19662164466979,0,0,0.371457501329565,0,0,0.347140501607594,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.488124115096339,0.367663080345869,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.886413581652058,1.58891016975863,1.43418310374407,1.77334191099179,0,2.1349799145941,0.98667019366864,0,0.808264032418128,0.163461903113459,5.75158225050739,6.91411109375999,0.468642863667593,5.93104145977609,1.71141546463335,1.64393548606981,0.23486899728753,0.161872944368132,0,2.24569588380383,0.737005903870608,0.103325781175765,0,0,6.37112953356618,0,0.505008341862199,0.625592599359821,1.38532057742091,0.438977620880838,0,0.150238058906597,0.794025282120147,0.538168907066586,0.85422955527427,1.69545520927649,0.300091096084402,0.412210116953756,0,0,0.843881661206331,0,0.252433774244115,0.736399189138395,0,0,0.403008392910561,0,0.773043412653187,0,1.14721838155602,0,0,0,0,0,0,1.56449532329816,0,0,1.39310378409594,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,1.3725424823882,1.75600456653801,0,0.201057944823262,1.29623823221941,0,0,1.44331342025273,0.811512834825538,0.821860859650752,0,0,0.190254152234598,0,0,0.492434012174795,2.34004265139238,0.743155811443641,0,0.16798212819886,0,0.626909658919938,0.581267877027924,0.383382679165211,3.4486426652716,0,0.207328115540772,0,0.37872730027914,0,0.381988425558278,0,0,0,0,0,3.58819469905154,0.87192013766656,5.7203862940341,1.42198887333556,0,0.845302752556,0.26593811658487,0,0,0,0.799266537048298,0,0,0,1.30294473717494,0,0,0,0,0,1.2162378064119,0,0,1.19812427745791,0,0,1.01346914667305,0.61642896765115,0.358121926479791,0,0,0,0,3.55732473911449,2.60279707715243,0.773288812777695,0.502548796003046,0,0,0,0,0.36807447515742,1.00034104211935,1.62759014219841,0,0.356857977594324,0.157702415033935,0.702848489956279,2.70851489754947,2.27407504055985,1.03473071292505,1.32845119707087,0.368738337083406,0.347534457872331,1.17480694477644,4.11772108573027,0,0.431428401637234,0.106727557803444,0,0,0.30239029332968,0,0.153461973288062,0.561320188866147,0,0,0,0,1.85051632563187,3.19611105563629,2.46381468041427,0.519254429183621,2.90525946149898,0,0.601519410909855,0,0.229628896329213,0.364182336013434,0.262248829918848,0,0,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.82509499920588,2.29706215198469,0,0,2.61010939388729,0.770243085573222,1.5350367472613,0.827019434907183,0.966782203814463,0.580066775656914,1.02271952899321,5.51998621009772,0.495854746082934,0.576570202095319,0.893288987462089,0.10115778085555,0.464845549297286,2.20368642781448,2.0911118104818,1.84820148105653,1.59691809095107,0,0.18532421910392,1.43124886741991,1.86079184679834,0,0.190630193923825,0,0,1.59101623962968,0,0,0.274537029736055,0,1.2130948894399,3.17020642346017,2.94880919367287,0,1.46228093778771,1.05650146756755,0.272999822815972,0.424216295861138,1.13008116620243,0.551365343546124,1.32687795048244,3.06915619677634,1.15755106853338,0.655894752046633,1.21746226177622,1.8589409885985,2.25356482025793,0,0.0982490410131212,0.35667105148125,1.41904425628239,0.422215270595328,0.329294892959902,0.379473173765715,0.349934720244983,0.192444225451024,0,0,0.282431402330337,1.29151611801369,1.68471475667626,0.443430153536676,1.1486170010348,0,0,0.569647187174163,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0.166849141711909,0,3.34087408674291,0,0,0,0,0,0.586032717087576,0,0.445773537109913,0,0,0,0.307160702099232,2.98244294329889,1.96937182974718,0.222617410045812,0.329607748453519,0,0.398495976502139,0.552567831062295,0,0.613612095012929,0,0,0.0898683511473268,0.179021174675609,0,0.295930216910801,0,0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| |||
|short_description=p4@SPRED2 | |||
}} |
Revision as of 03:34, 21 January 2014
Short description: | p4@SPRED2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SPRED2_5end |
Coexpression cluster: | C1444_immature_migratory_CD14_amniotic_Eosinophils_CD19_Neutrophils |
Association with transcript: | 8bp_to_ENST00000474228_5end |
EntrezGene: | SPRED2 |
HGNC: | 17722 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.90e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.90e-10 | 42 |
defensive cell | 5.36e-10 | 48 |
phagocyte | 5.36e-10 | 48 |
macrophage dendritic cell progenitor | 4.26e-09 | 61 |
granulocyte monocyte progenitor cell | 2.30e-08 | 67 |
Langerhans cell | 3.28e-08 | 5 |
monopoietic cell | 9.85e-08 | 59 |
monocyte | 9.85e-08 | 59 |
monoblast | 9.85e-08 | 59 |
promonocyte | 9.85e-08 | 59 |
somatic stem cell | 2.61e-07 | 433 |
multi fate stem cell | 4.07e-07 | 427 |
vascular associated smooth muscle cell | 4.26e-07 | 32 |
myeloid lineage restricted progenitor cell | 6.97e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neocortex | 5.55e-16 | 20 |
regional part of cerebral cortex | 1.12e-15 | 22 |
cerebral cortex | 3.97e-13 | 25 |
pallium | 3.97e-13 | 25 |
musculoskeletal system | 4.79e-12 | 167 |
cerebral hemisphere | 1.06e-11 | 32 |
telencephalon | 1.20e-10 | 34 |
regional part of telencephalon | 2.60e-10 | 32 |
brain grey matter | 2.27e-09 | 34 |
gray matter | 2.27e-09 | 34 |
skeletal element | 1.08e-08 | 90 |
bone marrow | 1.26e-08 | 76 |
gyrus | 3.73e-08 | 6 |
skeletal system | 5.93e-08 | 100 |
bone element | 6.51e-08 | 82 |
regional part of forebrain | 8.11e-08 | 41 |
forebrain | 8.11e-08 | 41 |
anterior neural tube | 8.11e-08 | 41 |
future forebrain | 8.11e-08 | 41 |
germ layer | 7.46e-07 | 560 |
germ layer / neural crest | 7.46e-07 | 560 |
embryonic tissue | 7.46e-07 | 560 |
presumptive structure | 7.46e-07 | 560 |
germ layer / neural crest derived structure | 7.46e-07 | 560 |
epiblast (generic) | 7.46e-07 | 560 |