FFCP PHASE1:Mm9::chr11:29273590..29273613,+: Difference between revisions
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{{FFCP|EntrezGene=108686|HGNC=|MCL_coexpression_id=782|UniProt=Q5SNZ0|association_with_transcript=-44bp_to_ENSMUST00000040182_5end|description=CAGE_peak_2_at_Ccdc88a_5end|id=chr11:29273590..29273613,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.01e-08!52;UBERON:0005068!1.01e-08!52;UBERON:0006241!1.01e-08!52;UBERON:0007135!1.01e-08!52;UBERON:0000033!1.45e-08!63;UBERON:0003056!1.73e-08!49;UBERON:0002346!4.58e-08!71;UBERON:0003075!4.58e-08!71;UBERON:0007284!4.58e-08!71;UBERON:0002021!1.56e-07!10;UBERON:0000411!1.56e-07!10;UBERON:0001950!1.56e-07!10;UBERON:0000955!1.60e-07!50;UBERON:0006238!1.60e-07!50;UBERON:0002020!3.21e-07!34;UBERON:0002616!4.57e-07!49;UBERON:0003080!6.07e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-09,64;UBERON:0003075,1.39e-09,64;UBERON:0007284,1.39e-09,64;UBERON:0001049,3.50e-09,52;UBERON:0005068,3.50e-09,52;UBERON:0006241,3.50e-09,52;UBERON:0007135,3.50e-09,52;UBERON:0000073,4.82e-09,54;UBERON:0003056,9.93e-09,49;UBERON:0010371,1.50e-08,73;UBERON:0000955,1.01e-07,47;UBERON:0006238,1.01e-07,47;UBERON:0002021,1.15e-07,10;UBERON:0000411,1.15e-07,10;UBERON:0001950,1.15e-07,10;UBERON:0010314,1.19e-07,92;UBERON:0002020,2.52e-07,34;UBERON:0002616,3.01e-07,46;UBERON:0003080,3.79e-07,40;UBERON:0001017,6.71e-07,73|phase1_expression=3.20297694209588,0,0,0,0,0,0,0.516493293766305,0,0.234064526321993,0,0.159544317990673,0,0.262261207256992,1.33243904726265,1.21485160433896,0.699561878128147,0.157731082679119,0.548457734422955,0.42438965179803,5.01755411891312,0.0992909512008853,0,0.639969691173627,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0.418531630736908,2.3440060335714,1.57057123192139,0.588231488031014,1.36609096991689,2.42755176515577,1.51076181570693,1.4192770370732,1.10128051297009,0,0,0.659058548203415,0.194429899074283,0.139986421625363,0,0.167782606057736,0,0,1.28629718017973,1.14613375975503,1.54701627683233,3.84401275633236,3.1739458756322,3.1691570175309,1.69422266034566,0,0.449949858640699,2.96659908770092,0,0,1.53687322128622,1.97010263386108,1.75507719831198,2.10324961351382,3.42781181284564,3.3130281142742,2.81728838194394,1.34183659425531,0,1.10115880999389,3.31987079021488,3.37934373163736,1.45074916503213,1.18933936683133,2.08365348222704,1.67509799400829,1.68828783009504,3.36156145108982,7.36571463684169,6.54909731675874,2.23679334990361,0.757261933331841,1.28471652181535,0.579728977403356,0.860423876981386,0,0,0,0,1.68533304158102,2.55645483867087,1.29893002301434,1.7666978725517,1.40843419776681,2.56652954828636,0,0,0.649473123033642,0.253359865475099,0.505524445014783,0.91347103775248,1.8125651855302,1.33597925158342,1.38788261412909,0.304465478312141,0.922461989024234,1.3565037649736,4.35078216402108,1.38233250462643,0.988779870937496,1.87979163995885,3.5384422077995,4.36770494858005,2.87093973998512,3.87900202508178,0,3.80615036115011,2.51336048176146,0,2.75574786363617,0.599902730993408,2.1601938602421,5.54225365797844,6.40500843946077,8.67015029578764,7.64827008846016,7.67146371990992,4.57133698031032,4.54275536589721,3.56437773476107,2.36373244159177,1.76905930903572,1.89397670297827,1.43132487258974,2.75882525320168,2.34080768746954,2.41127708537144,5.98721192531685,4.09963904911519,4.2165776051878,3.3631438196072,1.5089759505299,4.53854592402766,3.69497360744293,2.84954452155847,2.50242524303038,4.179025998266,2.26360350048738,0.59710280045548,0,1.80143534980301,0.852490498186778,2.27838349789052,2.34526059981096,1.08037236876609,1.65721314909647,2.55793501271625,1.54267112887378,1.62773761325285,1.87791380979733,2.80236821681207,3.78487654801005,1.80584210487005,2.59420190546738,2.19299981137998,1.97595103761946,1.20785776884335,7.57043814830858,9.67303356365274,0,0.528901133327089,2.55945900642281,2.32236671860439,1.9330119198314,1.21010114774006,1.33426826306922,1.52180500890047,0,0.988193728344065,1.50801125280162,1.79060824837036,2.33956904542944,0,0.216138049874694,0.199141273254367,0.569003702859245,1.37098215131675,3.38123207019241,2.44381593414377,2.32742984601151,3.15611189506434,3.41477300470989,1.18088118383682,1.41298855057237,0.863780147452604,0,2.50267658574141,2.94838492669805,1.12431056192427,1.62288097110802,0.72353147925725,1.01850340712568,0.575392274901621,1.13494658742525,1.37280706594041,0,0.372140947668503,1.5601883655728,1.01031551178845,0.179397413521912,0.964887042726734,2.03228509183265,1.70542270593436,2.60743962307241,2.37643120085263,1.87752198630802,3.68513766371995,1.90434912708811,1.17080188714679,4.41378403497335,3.5434350343804,5.58091690301205,2.13022309130459,1.20879487306127,1.01254341007058,0,4.35124547054968,0,0.827810238914197,5.45872005958493,3.5163505977661,1.63934945376675,2.01976741763498,0.94652465824877,0.390438744296638,1.72338718186239,0.477937595905104,1.78238939265915,1.98153571552183,0.809621403349789,0.292255857911312,2.76701444562566,7.06906896127976,2.27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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:108686 | |||
|HGNC= | |||
|MCL_coexpression_id=782 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5SNZ0 | |||
|association_with_transcript=-44bp_to_ENSMUST00000040182_5end | |||
|cluster_id=chr11:29273590..29273613,+ | |||
|description=CAGE_peak_2_at_Ccdc88a_5end | |||
|id=chr11:29273590..29273613,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.01e-08!52;UBERON:0005068!1.01e-08!52;UBERON:0006241!1.01e-08!52;UBERON:0007135!1.01e-08!52;UBERON:0000033!1.45e-08!63;UBERON:0003056!1.73e-08!49;UBERON:0002346!4.58e-08!71;UBERON:0003075!4.58e-08!71;UBERON:0007284!4.58e-08!71;UBERON:0002021!1.56e-07!10;UBERON:0000411!1.56e-07!10;UBERON:0001950!1.56e-07!10;UBERON:0000955!1.60e-07!50;UBERON:0006238!1.60e-07!50;UBERON:0002020!3.21e-07!34;UBERON:0002616!4.57e-07!49;UBERON:0003080!6.07e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-09,64;UBERON:0003075,1.39e-09,64;UBERON:0007284,1.39e-09,64;UBERON:0001049,3.50e-09,52;UBERON:0005068,3.50e-09,52;UBERON:0006241,3.50e-09,52;UBERON:0007135,3.50e-09,52;UBERON:0000073,4.82e-09,54;UBERON:0003056,9.93e-09,49;UBERON:0010371,1.50e-08,73;UBERON:0000955,1.01e-07,47;UBERON:0006238,1.01e-07,47;UBERON:0002021,1.15e-07,10;UBERON:0000411,1.15e-07,10;UBERON:0001950,1.15e-07,10;UBERON:0010314,1.19e-07,92;UBERON:0002020,2.52e-07,34;UBERON:0002616,3.01e-07,46;UBERON:0003080,3.79e-07,40;UBERON:0001017,6.71e-07,73 | |||
|phase1_expression=3.20297694209588,0,0,0,0,0,0,0.516493293766305,0,0.234064526321993,0,0.159544317990673,0,0.262261207256992,1.33243904726265,1.21485160433896,0.699561878128147,0.157731082679119,0.548457734422955,0.42438965179803,5.01755411891312,0.0992909512008853,0,0.639969691173627,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0.418531630736908,2.3440060335714,1.57057123192139,0.588231488031014,1.36609096991689,2.42755176515577,1.51076181570693,1.4192770370732,1.10128051297009,0,0,0.659058548203415,0.194429899074283,0.139986421625363,0,0.167782606057736,0,0,1.28629718017973,1.14613375975503,1.54701627683233,3.84401275633236,3.1739458756322,3.1691570175309,1.69422266034566,0,0.449949858640699,2.96659908770092,0,0,1.53687322128622,1.97010263386108,1.75507719831198,2.10324961351382,3.42781181284564,3.3130281142742,2.81728838194394,1.34183659425531,0,1.10115880999389,3.31987079021488,3.37934373163736,1.45074916503213,1.18933936683133,2.08365348222704,1.67509799400829,1.68828783009504,3.36156145108982,7.36571463684169,6.54909731675874,2.23679334990361,0.757261933331841,1.28471652181535,0.579728977403356,0.860423876981386,0,0,0,0,1.68533304158102,2.55645483867087,1.29893002301434,1.7666978725517,1.40843419776681,2.56652954828636,0,0,0.649473123033642,0.253359865475099,0.505524445014783,0.91347103775248,1.8125651855302,1.33597925158342,1.38788261412909,0.304465478312141,0.922461989024234,1.3565037649736,4.35078216402108,1.38233250462643,0.988779870937496,1.87979163995885,3.5384422077995,4.36770494858005,2.87093973998512,3.87900202508178,0,3.80615036115011,2.51336048176146,0,2.75574786363617,0.599902730993408,2.1601938602421,5.54225365797844,6.40500843946077,8.67015029578764,7.64827008846016,7.67146371990992,4.57133698031032,4.54275536589721,3.56437773476107,2.36373244159177,1.76905930903572,1.89397670297827,1.43132487258974,2.75882525320168,2.34080768746954,2.41127708537144,5.98721192531685,4.09963904911519,4.2165776051878,3.3631438196072,1.5089759505299,4.53854592402766,3.69497360744293,2.84954452155847,2.50242524303038,4.179025998266,2.26360350048738,0.59710280045548,0,1.80143534980301,0.852490498186778,2.27838349789052,2.34526059981096,1.08037236876609,1.65721314909647,2.55793501271625,1.54267112887378,1.62773761325285,1.87791380979733,2.80236821681207,3.78487654801005,1.80584210487005,2.59420190546738,2.19299981137998,1.97595103761946,1.20785776884335,7.57043814830858,9.67303356365274,0,0.528901133327089,2.55945900642281,2.32236671860439,1.9330119198314,1.21010114774006,1.33426826306922,1.52180500890047,0,0.988193728344065,1.50801125280162,1.79060824837036,2.33956904542944,0,0.216138049874694,0.199141273254367,0.569003702859245,1.37098215131675,3.38123207019241,2.44381593414377,2.32742984601151,3.15611189506434,3.41477300470989,1.18088118383682,1.41298855057237,0.863780147452604,0,2.50267658574141,2.94838492669805,1.12431056192427,1.62288097110802,0.72353147925725,1.01850340712568,0.575392274901621,1.13494658742525,1.37280706594041,0,0.372140947668503,1.5601883655728,1.01031551178845,0.179397413521912,0.964887042726734,2.03228509183265,1.70542270593436,2.60743962307241,2.37643120085263,1.87752198630802,3.68513766371995,1.90434912708811,1.17080188714679,4.41378403497335,3.5434350343804,5.58091690301205,2.13022309130459,1.20879487306127,1.01254341007058,0,4.35124547054968,0,0.827810238914197,5.45872005958493,3.5163505977661,1.63934945376675,2.01976741763498,0.94652465824877,0.390438744296638,1.72338718186239,0.477937595905104,1.78238939265915,1.98153571552183,0.809621403349789,0.292255857911312,2.76701444562566,7.06906896127976,2.2710413633323,0.890328018336276,7.32991317091092,1.81467135269789,0,1.94224508923985,1.209294227859,0.377210159511796,1.77181135728464,1.53717573971964,1.80899805217755,2.90826983582004,0.712994756769443,1.58018378967908,0,0,2.7235168460303,1.8006109403131,0,2.14337035031592,3.72414490648775,3.56737635204141,2.79733335023606,1.522324745573,1.64270195644597,1.90648863777438,0.441056796109924,2.30840754118072,2.42196640043858,1.99032652262914,2.14870219205646,1.14898629821543,0.582961673259701,3.70850604021019,0.512612642393558,2.06386867963222,2.03713980106683,1.50694765603753,2.32380187125743,1.83022538565218,1.5298058699447,1.25956307091292,1.24379976423981,0,2.37251995185852,2.03319467126849,2.48412283890143,1.25452977608681,0.655087691238533,1.61837215661785,2.47960367176008,1.04702376793612,0.518459893167171,1.24267862617385,19.1655599152625,2.54178128274764,2.31641886639937,4.4723773319131,1.16243841129958,3.04121025883401,4.69428954583016,3.77592716047455,4.50895181030557,1.69108884578204,7.77681016896237,3.16011120628178,2.22997736819181,1.74608627180206,1.55904987573354,3.40150721768215,2.78153896693771,1.9231271923195,1.9199638532695,1.9183625490148,2.209997392995,1.41156659191577,0.974578807397524,0.865906574762965,1.40252282617883,1.13365191807606,1.33191572024439,0.62799699626633,1.00730769818447,2.12508553435409,1.12609485270709,1.28206136987086,0.85747351631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| |||
|short_description=p2@Ccdc88a | |||
}} |
Revision as of 18:31, 5 August 2015
Short description: | p2@Ccdc88a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ccdc88a_5end |
Coexpression cluster: | MCL_coexpression_mm9:782 |
Association with transcript: | -44bp_to_ENSMUST00000040182_5end |
EntrezGene: | 108686 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.39e-09 | 64 |
neural plate | 1.39e-09 | 64 |
presumptive neural plate | 1.39e-09 | 64 |
neural tube | 3.50e-09 | 52 |
neural rod | 3.50e-09 | 52 |
future spinal cord | 3.50e-09 | 52 |
neural keel | 3.50e-09 | 52 |
regional part of nervous system | 4.82e-09 | 54 |
pre-chordal neural plate | 9.93e-09 | 49 |
ecto-epithelium | 1.50e-08 | 73 |
brain | 1.01e-07 | 47 |
future brain | 1.01e-07 | 47 |
occipital lobe | 1.15e-07 | 10 |
visual cortex | 1.15e-07 | 10 |
neocortex | 1.15e-07 | 10 |
structure with developmental contribution from neural crest | 1.19e-07 | 92 |
gray matter | 2.52e-07 | 34 |
regional part of brain | 3.01e-07 | 46 |
anterior neural tube | 3.79e-07 | 40 |
central nervous system | 6.71e-07 | 73 |