FFCP PHASE1:Mm9::chr11:17059277..17059360,+: Difference between revisions
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{{FFCP|EntrezGene=19058|HGNC=|MCL_coexpression_id=2|UniProt=Q63810|association_with_transcript=0bp_to_NM_024459,uc007ica.1_5end|description=CAGE_peak_1_at_Ppp3r1_5end|id=chr11:17059277..17059360,+|ontology_enrichment_celltype=CL:0000393!1.41e-14!39;CL:0000211!1.41e-14!39;CL:0000540!4.47e-13!33;CL:0000047!4.47e-13!33;CL:0000031!4.47e-13!33;CL:0000404!4.47e-13!33;CL:0000055!6.28e-12!50;CL:0000117!1.17e-11!23;CL:0000337!1.17e-11!23;CL:0002319!3.92e-11!43;CL:0000221!9.00e-11!44;CL:0000133!9.00e-11!44;CL:0002321!1.78e-07!70;CL:0000220!1.78e-07!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.41e-14,39;CL:0000211,1.41e-14,39;CL:0000540,4.47e-13,33;CL:0000047,4.47e-13,33;CL:0000031,4.47e-13,33;CL:0000404,4.47e-13,33;CL:0000117,1.17e-11,23;CL:0000337,1.17e-11,23;CL:0002319,3.92e-11,43;CL:0000221,9.00e-11,44;CL:0000133,9.00e-11,44;CL:0002321,1.78e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.97e-22!75;UBERON:0001016!2.97e-22!75;UBERON:0001017!4.17e-22!73;UBERON:0005743!4.17e-22!73;UBERON:0004121!5.01e-19!102;UBERON:0000924!5.01e-19!102;UBERON:0006601!5.01e-19!102;UBERON:0002020!1.30e-18!34;UBERON:0001049!1.01e-17!52;UBERON:0005068!1.01e-17!52;UBERON:0006241!1.01e-17!52;UBERON:0007135!1.01e-17!52;UBERON:0000955!1.03e-16!50;UBERON:0006238!1.03e-16!50;UBERON:0002616!3.66e-16!49;UBERON:0002791!9.11e-16!29;UBERON:0003528!9.11e-16!29;UBERON:0001893!9.11e-16!29;UBERON:0002346!5.00e-15!71;UBERON:0003075!5.00e-15!71;UBERON:0007284!5.00e-15!71;UBERON:0000033!3.32e-13!63;UBERON:0003080!5.65e-13!40;UBERON:0002780!2.11e-12!39;UBERON:0001890!2.11e-12!39;UBERON:0006240!2.11e-12!39;UBERON:0000956!1.64e-11!21;UBERON:0001869!1.64e-11!21;UBERON:0000203!1.64e-11!21;UBERON:0007811!7.19e-11!86;UBERON:0003056!1.21e-10!49;UBERON:0002619!2.68e-10!17;UBERON:0000153!2.44e-08!94;UBERON:0002021!3.95e-08!10;UBERON:0000411!3.95e-08!10;UBERON:0001950!3.95e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.97e-22,75;UBERON:0001017,4.17e-22,73;UBERON:0004121,8.01e-20,95;UBERON:0000924,8.01e-20,95;UBERON:0006601,8.01e-20,95;UBERON:0000073,5.36e-19,54;UBERON:0002020,1.30e-18,34;UBERON:0001049,1.01e-17,52;UBERON:0005068,1.01e-17,52;UBERON:0006241,1.01e-17,52;UBERON:0007135,1.01e-17,52;UBERON:0002346,3.98e-16,64;UBERON:0003075,3.98e-16,64;UBERON:0007284,3.98e-16,64;UBERON:0003528,9.11e-16,29;UBERON:0002791,9.11e-16,29;UBERON:0001893,9.11e-16,29;UBERON:0010371,3.93e-15,73;UBERON:0000955,6.79e-15,47;UBERON:0006238,6.79e-15,47;UBERON:0002616,2.32e-14,46;UBERON:0003080,5.65e-13,40;UBERON:0002780,2.11e-12,39;UBERON:0001890,2.11e-12,39;UBERON:0006240,2.11e-12,39;UBERON:0010314,7.25e-12,92;UBERON:0000956,1.64e-11,21;UBERON:0001869,1.64e-11,21;UBERON:0000203,1.64e-11,21;UBERON:0003056,1.21e-10,49;UBERON:0002619,2.68e-10,17;UBERON:0002021,3.95e-08,10;UBERON:0000411,3.95e-08,10;UBERON:0001950,3.95e-08,10|phase1_expression=65.8211761600703,70.8420077507903,70.0698828659885,70.4741612344914,71.1271936523813,54.2250048275404,60.7392865548367,78.7652272993615,87.5705851783367,81.4544551600537,49.824428753622,60.945929472437,90.2227846737454,82.3500190786956,67.6212816485795,44.7470340931515,37.0767795407918,83.7552049026121,89.3986107109417,81.9072027970198,138.620562946244,52.7234950876701,55.3743552974543,58.3972343195934,65.1522358230763,57.997428375617,62.0297274469068,56.8844054290747,86.6506792721065,86.4463345076562,62.7497345154512,66.6782207132613,55.3558308826113,110.937176710807,37.2618589479144,49.3716896714722,44.7130890214588,153.182576849708,143.765703392379,149.204267032532,138.822631175319,141.390415386398,151.47923014572,97.1923434771457,88.8061917482948,94.8936708675894,77.4567430904559,70.8581758236451,99.2981545959813,110.241752775119,81.7520702292117,74.7513334697852,86.575824725792,132.741271988076,103.516890135879,99.0448828738396,107.163506537095,145.935202114516,153.962826714154,181.443905890307,152.753368244989,72.8515743948634,71.1435836888911,86.840322717655,106.797567157233,75.3108921842866,67.7096249771595,60.3222739354841,101.823199286925,101.659471563763,98.4320819124468,327.356028126759,287.129103237098,115.141351262057,94.3119434819446,127.771411338793,432.755412327598,424.560399133249,374.95354767849,153.515638917946,151.229074874783,158.357664649255,327.202474829618,285.883405896093,319.50113610131,294.628585473668,264.526582924733,215.291359928222,86.4793127864962,85.3202913605608,70.7269352432094,55.0671281268087,166.592976758399,59.3673510801599,63.0283124924239,104.390264693679,104.069315317628,69.0242806441134,65.2062871553201,64.3078025608819,71.8301440861071,94.9615932865952,135.046777044522,113.770672504533,70.3595883286446,67.3937242163762,78.3562889772914,82.4407611571613,88.0388804400384,87.5808620482466,67.1388214584946,72.4627838382896,68.4928026850494,78.8279410090216,85.6045787947931,84.6992825562013,93.1925028358589,68.9738932507979,106.153266233985,120.51630321082,113.954223525563,93.0960486019627,68.9649516507052,191.771422042563,213.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19058 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q63810 | |||
|association_with_transcript=0bp_to_NM_024459,uc007ica.1_5end | |||
|cluster_id=chr11:17059277..17059360,+ | |||
|description=CAGE_peak_1_at_Ppp3r1_5end | |||
|id=chr11:17059277..17059360,+ | |||
|ontology_enrichment_celltype=CL:0000393!1.41e-14!39;CL:0000211!1.41e-14!39;CL:0000540!4.47e-13!33;CL:0000047!4.47e-13!33;CL:0000031!4.47e-13!33;CL:0000404!4.47e-13!33;CL:0000055!6.28e-12!50;CL:0000117!1.17e-11!23;CL:0000337!1.17e-11!23;CL:0002319!3.92e-11!43;CL:0000221!9.00e-11!44;CL:0000133!9.00e-11!44;CL:0002321!1.78e-07!70;CL:0000220!1.78e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.41e-14,39;CL:0000211,1.41e-14,39;CL:0000540,4.47e-13,33;CL:0000047,4.47e-13,33;CL:0000031,4.47e-13,33;CL:0000404,4.47e-13,33;CL:0000117,1.17e-11,23;CL:0000337,1.17e-11,23;CL:0002319,3.92e-11,43;CL:0000221,9.00e-11,44;CL:0000133,9.00e-11,44;CL:0002321,1.78e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.97e-22!75;UBERON:0001016!2.97e-22!75;UBERON:0001017!4.17e-22!73;UBERON:0005743!4.17e-22!73;UBERON:0004121!5.01e-19!102;UBERON:0000924!5.01e-19!102;UBERON:0006601!5.01e-19!102;UBERON:0002020!1.30e-18!34;UBERON:0001049!1.01e-17!52;UBERON:0005068!1.01e-17!52;UBERON:0006241!1.01e-17!52;UBERON:0007135!1.01e-17!52;UBERON:0000955!1.03e-16!50;UBERON:0006238!1.03e-16!50;UBERON:0002616!3.66e-16!49;UBERON:0002791!9.11e-16!29;UBERON:0003528!9.11e-16!29;UBERON:0001893!9.11e-16!29;UBERON:0002346!5.00e-15!71;UBERON:0003075!5.00e-15!71;UBERON:0007284!5.00e-15!71;UBERON:0000033!3.32e-13!63;UBERON:0003080!5.65e-13!40;UBERON:0002780!2.11e-12!39;UBERON:0001890!2.11e-12!39;UBERON:0006240!2.11e-12!39;UBERON:0000956!1.64e-11!21;UBERON:0001869!1.64e-11!21;UBERON:0000203!1.64e-11!21;UBERON:0007811!7.19e-11!86;UBERON:0003056!1.21e-10!49;UBERON:0002619!2.68e-10!17;UBERON:0000153!2.44e-08!94;UBERON:0002021!3.95e-08!10;UBERON:0000411!3.95e-08!10;UBERON:0001950!3.95e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.97e-22,75;UBERON:0001017,4.17e-22,73;UBERON:0004121,8.01e-20,95;UBERON:0000924,8.01e-20,95;UBERON:0006601,8.01e-20,95;UBERON:0000073,5.36e-19,54;UBERON:0002020,1.30e-18,34;UBERON:0001049,1.01e-17,52;UBERON:0005068,1.01e-17,52;UBERON:0006241,1.01e-17,52;UBERON:0007135,1.01e-17,52;UBERON:0002346,3.98e-16,64;UBERON:0003075,3.98e-16,64;UBERON:0007284,3.98e-16,64;UBERON:0003528,9.11e-16,29;UBERON:0002791,9.11e-16,29;UBERON:0001893,9.11e-16,29;UBERON:0010371,3.93e-15,73;UBERON:0000955,6.79e-15,47;UBERON:0006238,6.79e-15,47;UBERON:0002616,2.32e-14,46;UBERON:0003080,5.65e-13,40;UBERON:0002780,2.11e-12,39;UBERON:0001890,2.11e-12,39;UBERON:0006240,2.11e-12,39;UBERON:0010314,7.25e-12,92;UBERON:0000956,1.64e-11,21;UBERON:0001869,1.64e-11,21;UBERON:0000203,1.64e-11,21;UBERON:0003056,1.21e-10,49;UBERON:0002619,2.68e-10,17;UBERON:0002021,3.95e-08,10;UBERON:0000411,3.95e-08,10;UBERON:0001950,3.95e-08,10 | |||
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| |||
|short_description=p1@Ppp3r1 | |||
}} |
Revision as of 16:37, 5 August 2015
Short description: | p1@Ppp3r1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ppp3r1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_NM_024459, uc007ica.1_5end |
EntrezGene: | 19058 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.41e-14 | 39 |
electrically active cell | 1.41e-14 | 39 |
neuron | 4.47e-13 | 33 |
neuronal stem cell | 4.47e-13 | 33 |
neuroblast | 4.47e-13 | 33 |
electrically signaling cell | 4.47e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.17e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.17e-11 | 23 |
neural cell | 3.92e-11 | 43 |
ectodermal cell | 9.00e-11 | 44 |
neurectodermal cell | 9.00e-11 | 44 |
embryonic cell | 1.78e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.97e-22 | 75 |
central nervous system | 4.17e-22 | 73 |
ectoderm-derived structure | 8.01e-20 | 95 |
ectoderm | 8.01e-20 | 95 |
presumptive ectoderm | 8.01e-20 | 95 |
regional part of nervous system | 5.36e-19 | 54 |
gray matter | 1.30e-18 | 34 |
neural tube | 1.01e-17 | 52 |
neural rod | 1.01e-17 | 52 |
future spinal cord | 1.01e-17 | 52 |
neural keel | 1.01e-17 | 52 |
neurectoderm | 3.98e-16 | 64 |
neural plate | 3.98e-16 | 64 |
presumptive neural plate | 3.98e-16 | 64 |
brain grey matter | 9.11e-16 | 29 |
regional part of telencephalon | 9.11e-16 | 29 |
telencephalon | 9.11e-16 | 29 |
ecto-epithelium | 3.93e-15 | 73 |
brain | 6.79e-15 | 47 |
future brain | 6.79e-15 | 47 |
regional part of brain | 2.32e-14 | 46 |
anterior neural tube | 5.65e-13 | 40 |
regional part of forebrain | 2.11e-12 | 39 |
forebrain | 2.11e-12 | 39 |
future forebrain | 2.11e-12 | 39 |
structure with developmental contribution from neural crest | 7.25e-12 | 92 |
cerebral cortex | 1.64e-11 | 21 |
cerebral hemisphere | 1.64e-11 | 21 |
pallium | 1.64e-11 | 21 |
pre-chordal neural plate | 1.21e-10 | 49 |
regional part of cerebral cortex | 2.68e-10 | 17 |
occipital lobe | 3.95e-08 | 10 |
visual cortex | 3.95e-08 | 10 |
neocortex | 3.95e-08 | 10 |