FFCP PHASE1:Mm9::chr11:112643496..112643562,+: Difference between revisions
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{{FFCP|EntrezGene=20682|HGNC=|UniProt=Q04887,B1AVH1|association_with_transcript=0bp_to_ENSMUST00000000579,NM_011448,uc007med.2_5end|description=CAGE_peak_1_at_Sox9_5end|id=chr11:112643496..112643562,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.96e-12!63;UBERON:0000468!7.73e-11!333;UBERON:0004121!3.82e-10!102;UBERON:0000924!3.82e-10!102;UBERON:0006601!3.82e-10!102;UBERON:0003056!9.46e-09!49;UBERON:0001049!1.04e-08!52;UBERON:0005068!1.04e-08!52;UBERON:0006241!1.04e-08!52;UBERON:0007135!1.04e-08!52;UBERON:0001017!2.13e-08!73;UBERON:0005743!2.13e-08!73;UBERON:0002616!3.16e-08!49;UBERON:0000955!3.34e-08!50;UBERON:0006238!3.34e-08!50;UBERON:0000922!4.04e-08!328;UBERON:0000073!1.44e-07!75;UBERON:0001016!1.44e-07!75;UBERON:0000153!3.39e-07!94;UBERON:0002346!9.13e-07!71;UBERON:0003075!9.13e-07!71;UBERON:0007284!9.13e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.62e-13,73;UBERON:0004121,5.23e-13,95;UBERON:0000924,5.23e-13,95;UBERON:0006601,5.23e-13,95;UBERON:0002346,1.54e-09,64;UBERON:0003075,1.54e-09,64;UBERON:0007284,1.54e-09,64;UBERON:0003056,9.40e-09,49;UBERON:0000073,9.53e-09,54;UBERON:0001049,1.03e-08,52;UBERON:0005068,1.03e-08,52;UBERON:0006241,1.03e-08,52;UBERON:0007135,1.03e-08,52;UBERON:0001017,2.12e-08,73;UBERON:0002616,7.22e-08,46;UBERON:0000955,7.68e-08,47;UBERON:0006238,7.68e-08,47;UBERON:0001016,1.43e-07,75;UBERON:0010314,3.42e-07,92|phase1_expression=124.115356506215,7.67745896806594,5.45999087267443,9.67885476181856,6.51164448930251,50.8674193893026,54.198132618162,0,0,0,0,0,0,0,0,0,0,0,0,0,28.1493290400041,0.198581902401771,0.522399578277871,31.5185072903011,30.2820251008664,12.0588712464154,20.2458138194765,34.6908684624281,26.0332084655232,23.9428623271934,20.1774764696327,0,0,0,70.1909435995597,66.6600927887554,84.1177747800961,0,0,0,0,0,0,58.7938139945946,61.6371741814649,24.9623582939887,109.534788208725,205.815747623142,283.395175727469,254.703167787311,125.56782019795,218.503897834757,0,0,0,179.309826917055,118.051777254768,113.447860301037,67.5736979271057,70.8847912224524,59.5801519295808,34.9009868031206,30.2360230677787,5.39939830368839,4.94433181283487,2.1314403448383,281.6241038873,617.054598346417,66.1539726528087,60.6176663109291,67.724637555145,60.2723577092026,56.9840835655163,61.7353628043368,74.0885490970967,54.2339084099912,62.7660521696516,55.799366743227,47.925238375948,59.4807157663174,62.3945729368434,51.0495103145625,37.6897048651864,44.4582461925027,51.3402112530082,57.7472027528389,58.2300174468331,36.3478919359336,3.10477392666055,6.12129636864963,126.670781562633,17.2084775396277,397.783230219034,16.1910957491345,11.0461990966104,5.37632264516803,20.926218599631,5.45377032249785,2.07828803682295,4.24007489412408,106.900155610501,210.455422959481,315.958497236241,277.316014229799,33.9890934387606,45.0980560545676,42.4640533812418,20.5530983494308,2.07150306917737,6.38301197978747,12.1439728736295,5.1759131313064,5.30415643688935,4.82312449768392,10.347806227942,4.77533047052767,7.16865406429684,7.37456720291549,4.42305275974937,76.6774868750719,32.0220201767571,43.1538975290348,59.6453635897991,80.2219383811639,45.2404886717063,57.7332944771417,0.359445373517761,0,0.254140454146129,62.4626966318111,75.0300988622547,119.245980155108,59.100268865374,55.7459696980121,67.1155383927379,60.1915085981381,16.3961375799009,40.18345150706,63.4334123668524,140.154276020392,84.318047039832,45.5206166778276,75.4460323884413,67.2143487547289,62.7976887166756,87.3735572342676,81.1456934687252,66.228062909188,236.262520254395,317.320002521601,266.390001984219,183.686023774308,153.204034323304,80.7945026331426,93.6308720656143,36.6223050946027,0,0,0,61.1021028979731,70.1232919343478,47.1762601027859,48.7694155305533,37.1884398002593,30.6991554645883,28.8342091490506,25.7542465343634,18.5656894363799,25.8358964364164,21.0134354021242,18.3215509573634,14.9123987173839,13.6121071480451,8.32079796314305,71.7088724603674,86.9543974604953,12.5559137533843,43.3698929328213,38.8184615974126,46.6795710439481,56.9594179043653,45.7821600894988,34.6909748397998,37.2842227180616,41.2840283543725,32.4456940806301,36.6949404848393,44.1683367931355,40.552530120777,35.9527763461689,32.2045694313294,39.6291133776191,49.8826579506605,27.6481400515544,55.2267904798094,32.9915151109409,28.3170631264734,20.690066867644,3.73095569033118,1.77132177575523,2.98297582898612,2.59134044235781,6.52195779591728,8.5091003915208,7.86235980452812,3.14806957338795,3.04290182082754,5.30589751455317,7.38414970166117,11.7955416354832,3.89124544260085,7.68771956926628,20.1275489138296,13.3970741160661,19.3463357331028,13.639259409144,13.4548060141434,17.3679667690812,1.10851914099963,63.6691143548829,74.3120292575638,68.9165048247264,72.9886672177242,48.4093084006848,34.278284287586,17.3668946593441,11.1920952315396,12.1805579306826,11.0023790373666,4.42430949732493,3.28101465545202,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20682 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q04887,uniprot:B1AVH1 | |||
|association_with_transcript=0bp_to_ENSMUST00000000579,NM_011448,uc007med.2_5end | |||
|cluster_id=chr11:112643496..112643562,+ | |||
|description=CAGE_peak_1_at_Sox9_5end | |||
|id=chr11:112643496..112643562,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.96e-12!63;UBERON:0000468!7.73e-11!333;UBERON:0004121!3.82e-10!102;UBERON:0000924!3.82e-10!102;UBERON:0006601!3.82e-10!102;UBERON:0003056!9.46e-09!49;UBERON:0001049!1.04e-08!52;UBERON:0005068!1.04e-08!52;UBERON:0006241!1.04e-08!52;UBERON:0007135!1.04e-08!52;UBERON:0001017!2.13e-08!73;UBERON:0005743!2.13e-08!73;UBERON:0002616!3.16e-08!49;UBERON:0000955!3.34e-08!50;UBERON:0006238!3.34e-08!50;UBERON:0000922!4.04e-08!328;UBERON:0000073!1.44e-07!75;UBERON:0001016!1.44e-07!75;UBERON:0000153!3.39e-07!94;UBERON:0002346!9.13e-07!71;UBERON:0003075!9.13e-07!71;UBERON:0007284!9.13e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.62e-13,73;UBERON:0004121,5.23e-13,95;UBERON:0000924,5.23e-13,95;UBERON:0006601,5.23e-13,95;UBERON:0002346,1.54e-09,64;UBERON:0003075,1.54e-09,64;UBERON:0007284,1.54e-09,64;UBERON:0003056,9.40e-09,49;UBERON:0000073,9.53e-09,54;UBERON:0001049,1.03e-08,52;UBERON:0005068,1.03e-08,52;UBERON:0006241,1.03e-08,52;UBERON:0007135,1.03e-08,52;UBERON:0001017,2.12e-08,73;UBERON:0002616,7.22e-08,46;UBERON:0000955,7.68e-08,47;UBERON:0006238,7.68e-08,47;UBERON:0001016,1.43e-07,75;UBERON:0010314,3.42e-07,92 | |||
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| |||
|short_description=p1@Sox9 | |||
}} |
Revision as of 09:40, 5 August 2015
Short description: | p1@Sox9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000000579, NM_011448, uc007med.2_5end |
EntrezGene: | 20682 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 2.62e-13 | 73 |
ectoderm-derived structure | 5.23e-13 | 95 |
ectoderm | 5.23e-13 | 95 |
presumptive ectoderm | 5.23e-13 | 95 |
neurectoderm | 1.54e-09 | 64 |
neural plate | 1.54e-09 | 64 |
presumptive neural plate | 1.54e-09 | 64 |
pre-chordal neural plate | 9.40e-09 | 49 |
regional part of nervous system | 9.53e-09 | 54 |
neural tube | 1.03e-08 | 52 |
neural rod | 1.03e-08 | 52 |
future spinal cord | 1.03e-08 | 52 |
neural keel | 1.03e-08 | 52 |
central nervous system | 2.12e-08 | 73 |
regional part of brain | 7.22e-08 | 46 |
brain | 7.68e-08 | 47 |
future brain | 7.68e-08 | 47 |
nervous system | 1.43e-07 | 75 |
structure with developmental contribution from neural crest | 3.42e-07 | 92 |