FFCP PHASE1:Hg19::chr2:29353367..29353397,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-82bp_to_ENST00000471165_5end | |||
|description=CAGE_peak_12_at_CLIP4_5end | |||
|id=chr2:29353367..29353397,+ | |||
|ontology_enrichment_celltype=CL:0000860!6.88e-10!45;CL:0002057!1.23e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.08e-25;33!CL:0002057;2.08e-25;33!CL:0000473;1.05e-15;39!CL:0000234;1.05e-15;39!CL:0000576;3.27e-12;48!CL:0000766;8.08e-08;69!CL:0000082;2.67e-07;19!CL:0000319;2.98e-07;1!CL:0002553;7.55e-07;1!CL:0002591;7.55e-07;1!CL:0002616;7.55e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.26e-20,42;CL:0002057,2.26e-20,42;CL:0000473,1.73e-17,48;CL:0000234,1.73e-17,48;CL:0002194,1.86e-13,59;CL:0000576,1.86e-13,59;CL:0000040,1.86e-13,59;CL:0000559,1.86e-13,59;CL:0002009,6.17e-13,61;CL:0000839,8.98e-12,66;CL:0000557,1.46e-11,67;CL:0000766,1.37e-10,72;CL:0000082,2.44e-07,19;CL:0000319,3.17e-07,1;CL:0002616,4.01e-07,1;CL:0002553,4.78e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;1.41e-15;42!UBERON:0001041;2.38e-08;30 | |||
|ontology_enrichment_disease=DOID:305!4.79e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:0050615;3.10e-12;16!DOID:1324;2.56e-09;15!DOID:4556;1.43e-08;3!DOID:3030;2.98e-07;1!DOID:0050619;7.55e-07;1!DOID:1357;7.55e-07;1!DOID:5662;7.55e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050615,2.60e-12,16;DOID:1324,2.27e-09,15;DOID:4556,1.73e-08,3;DOID:3030,3.17e-07,1;DOID:0050619,6.76e-07,1;DOID:1357,6.76e-07,1;DOID:5662,7.15e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005153!4.47e-08!37;UBERON:0005157!3.01e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;2.67e-07;19!UBERON:0000115;2.67e-07;19!UBERON:0001764;7.55e-07;1!UBERON:0004913;7.55e-07;1!UBERON:0003703;7.55e-07;1!UBERON:0001825;7.55e-07;1!UBERON:0001174;7.55e-07;1!UBERON:0004914;7.55e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.64e-10,76;UBERON:0001474,5.32e-09,82;UBERON:0004765,5.52e-08,90;UBERON:0002405,1.20e-07,93;UBERON:0004802,2.44e-07,19;UBERON:0000115,2.44e-07,19;UBERON:0002390,3.90e-07,98;UBERON:0003061,3.90e-07,98;UBERON:0001434,6.05e-07,100;UBERON:0001764,6.76e-07,1;UBERON:0001825,6.76e-07,1;UBERON:0004807,9.91e-07,28 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.563817616383885,0,0,1.74467704820074,0,0.631719873426831,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0.0764134057479513,0,0.314843125254717,0,0,0,0,0,0.369754010166788,0.0774672005803016,0.426507697462265,0,0,0,0,0.223915474239924,0,0,0,0,0.242584061187816,0,2.05583944010913,0.309706370895104,1.1507695692886,1.5369642391746,1.41889337933151,0.689491361473237,2.5819387343353,0,0.376484679085209,0.272906150057846,0.674170453335254,0.612167784741805,2.88836124368484,0,0,0.398927315243264,1.27867425159808,0.870627715885752,3.40431134814684,0.622822248995575,0.75374599577023,1.5644487552606,1.3031330682307,1.81619850790011,4.41933163185078,3.16462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0.649094787309367,0,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0.735326160691737,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0.529636723252875,0,0.354668382198357,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0.206651562351531,1.18800285728205,0,0,0,0,0,0.277064115484183,0,0,0,0,0.358779271377724,0.213557388818567,0.211931901159562,0,0.206105058476878,0.515281080091258,0.18611685633159,0,0,0,0.184099797284599,0.323292113637624,0.710019185033229,0.302256294682921,0.169560592310488,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,1.1240175325762,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0.088048434013226,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0.355391948742546,0,0.904318131178758,0,0.199945982364114,0,0,0,0.239624855491583,1.14861935834114,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,1.07423381301644,0,0,0.511707249066704,0.160853921143607,0,0,0,0.164254312027618,1.03850885836724,0,0.120859449591622,0.200506470303285,0,0.34444334449382,0.182091168006717,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.27470839445503,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.107420244868274,0.145016693914229,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0,0,0.272999822815972,0.141405431953713,1.13008116620243,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0.709522128141196,0,0.329294892959902,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0.222617410045812,0.16480387422676,0,0,0,0,0.20453736500431,0.123084805461069,0.311039587661807,0.0898683511473268,1.61119057208048,0,0.394573622547734,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,0,0,0.291604613383254,0,0,0,0,0.110579259931225,0,0,0.10893846351899,0,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0.282706142867882,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0.126373159256976,0,0,1.32930774541437,0,0.313932918407225,1.19472429772959,0.853828638089378,0,0.694238953340524,0,0.174118413160805,0,0.687944129886466,0.774050650312681,0.146178634172371,0.164230914106418,0.0969890164884194,0,0,0,0,0.253243183823515,0,0.801588202515337,0,0,0,0,0,0,0.621262677827163,0,0.407712618220842,0,0.305994652908965,0,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0.446342914883745,0,0,0,0,0.0824158583811665,0,0.393709926058995,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0,2.86859742932552,1.15149118391667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684347351537318,0,0.213574825135389,0,0.414239055347196,0,0,0,0,0,0,0,0,1.41348686625211,0,0,0,0.573409195690071,0,0.0620964029413835,0,0,0,0,0,0,0,0,0.467426619694449,0,0,0.251567901752575,0,0.915360273587694,0,0.15543720058278,0.147855149989634,0,0.449803112163605,0,0.414706207840855,0,0,0,0,0,0.909243296012797,0.214821114084977,0,0,0,0.343395705182793,0.336749488765919,0,0.963099152036517,0.214441591374926,0.260994291965212,0,0.463044948647668,0.244736704506468,0,0,0,0.176689145945881,0.578742114812744,0.506827321959218,1.02496607435179,0,0.303859956177382,0,0,0.265729680626726,0,0.327609848846413,2.211956178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| |||
|short_description=p12@CLIP4 | |||
}} |
Revision as of 02:24, 21 January 2014
Short description: | p12@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_CLIP4_5end |
Coexpression cluster: | NA |
Association with transcript: | -82bp_to_ENST00000471165_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.26e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.26e-20 | 42 |
defensive cell | 1.73e-17 | 48 |
phagocyte | 1.73e-17 | 48 |
monopoietic cell | 1.86e-13 | 59 |
monocyte | 1.86e-13 | 59 |
monoblast | 1.86e-13 | 59 |
promonocyte | 1.86e-13 | 59 |
macrophage dendritic cell progenitor | 6.17e-13 | 61 |
myeloid lineage restricted progenitor cell | 8.98e-12 | 66 |
granulocyte monocyte progenitor cell | 1.46e-11 | 67 |
myeloid leukocyte | 1.37e-10 | 72 |
epithelial cell of lung | 2.44e-07 | 19 |
mucus secreting cell | 3.17e-07 | 1 |
perirenal adipocyte cell | 4.01e-07 | 1 |
lung fibroblast | 4.78e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.64e-10 | 76 |
bone element | 5.32e-09 | 82 |
skeletal element | 5.52e-08 | 90 |
immune system | 1.20e-07 | 93 |
respiratory tract epithelium | 2.44e-07 | 19 |
lung epithelium | 2.44e-07 | 19 |
hematopoietic system | 3.90e-07 | 98 |
blood island | 3.90e-07 | 98 |
skeletal system | 6.05e-07 | 100 |
maxillary sinus | 6.76e-07 | 1 |
paranasal sinus | 6.76e-07 | 1 |
respiratory system epithelium | 9.91e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
respiratory system cancer | 2.60e-12 | 16 |
lung cancer | 2.27e-09 | 15 |
lung large cell carcinoma | 1.73e-08 | 3 |
mucinous adenocarcinoma | 3.17e-07 | 1 |
paranasal sinus cancer | 6.76e-07 | 1 |
maxillary sinus cancer | 6.76e-07 | 1 |
pleomorphic carcinoma | 7.15e-07 | 1 |