FFCP PHASE1:Mm9::chr10:127930890..127930964,-: Difference between revisions
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{{FFCP|EntrezGene=17904,433297,433688|HGNC=|MCL_coexpression_id=1498|UniProt=Q60605|association_with_transcript=0bp_to_ENSMUST00000164181_5end|description=CAGE_peak_1_at_Gm11836_5end,CAGE_peak_1_at_Gm5526_5end,CAGE_peak_1_at_Myl6_5end|id=chr10:127930890..127930964,-|ontology_enrichment_celltype=CL:0002321!2.06e-13!70;CL:0000220!2.06e-13!70;CL:0000055!5.58e-11!50;CL:0000117!1.83e-09!23;CL:0000337!1.83e-09!23;CL:0002371!1.89e-09!118;CL:0000221!2.17e-09!44;CL:0000133!2.17e-09!44;CL:0002319!3.89e-09!43;CL:0000144!6.57e-09!121;CL:0000012!6.57e-09!121;CL:0000548!3.72e-08!115;CL:0000004!3.72e-08!115;CL:0000255!3.72e-08!115;CL:0000393!3.81e-07!39;CL:0000211!3.81e-07!39|ontology_enrichment_celltype_v019_2=CL:0002321,2.06e-13,70;CL:0000117,1.83e-09,23;CL:0000337,1.83e-09,23;CL:0000221,2.17e-09,44;CL:0000133,2.17e-09,44;CL:0002319,3.89e-09,43;CL:0000393,3.81e-07,39;CL:0000211,3.81e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.00e-15!75;UBERON:0001016!6.00e-15!75;UBERON:0001017!2.17e-14!73;UBERON:0005743!2.17e-14!73;UBERON:0001049!2.32e-14!52;UBERON:0005068!2.32e-14!52;UBERON:0006241!2.32e-14!52;UBERON:0007135!2.32e-14!52;UBERON:0002020!1.77e-13!34;UBERON:0000955!3.05e-13!50;UBERON:0006238!3.05e-13!50;UBERON:0002616!3.09e-13!49;UBERON:0002791!1.56e-11!29;UBERON:0003528!1.56e-11!29;UBERON:0001893!1.56e-11!29;UBERON:0004121!1.15e-10!102;UBERON:0000924!1.15e-10!102;UBERON:0006601!1.15e-10!102;UBERON:0000033!1.25e-10!63;UBERON:0002346!3.43e-10!71;UBERON:0003075!3.43e-10!71;UBERON:0007284!3.43e-10!71;UBERON:0003080!1.88e-09!40;UBERON:0002780!2.79e-09!39;UBERON:0001890!2.79e-09!39;UBERON:0006240!2.79e-09!39;UBERON:0000956!1.55e-08!21;UBERON:0001869!1.55e-08!21;UBERON:0000203!1.55e-08!21;UBERON:0002619!1.25e-07!17;UBERON:0003056!2.05e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.07e-15,54;UBERON:0001016,6.00e-15,75;UBERON:0001017,2.17e-14,73;UBERON:0001049,2.32e-14,52;UBERON:0005068,2.32e-14,52;UBERON:0006241,2.32e-14,52;UBERON:0007135,2.32e-14,52;UBERON:0002020,1.77e-13,34;UBERON:0000955,5.40e-12,47;UBERON:0006238,5.40e-12,47;UBERON:0002616,5.49e-12,46;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0004121,3.53e-11,95;UBERON:0000924,3.53e-11,95;UBERON:0006601,3.53e-11,95;UBERON:0002346,5.19e-11,64;UBERON:0003075,5.19e-11,64;UBERON:0007284,5.19e-11,64;UBERON:0010371,1.18e-09,73;UBERON:0003080,1.88e-09,40;UBERON:0002780,2.79e-09,39;UBERON:0001890,2.79e-09,39;UBERON:0006240,2.79e-09,39;UBERON:0000956,1.55e-08,21;UBERON:0001869,1.55e-08,21;UBERON:0000203,1.55e-08,21;UBERON:0010314,2.91e-08,92;UBERON:0002619,1.25e-07,17;UBERON:0003056,2.05e-07,49|phase1_expression=23.2215828301951,39.7831964708872,35.0349414329943,20.2651021575576,27.0483694171027,23.3352187957527,18.4553986070465,11.4919757863003,8.58811205125167,8.19225842126977,7.70480857014772,6.06268408364557,7.53283211697305,10.4030278878607,10.6595123781012,9.51633756732182,19.5877325875881,13.7226041930833,12.4774134581222,15.2780274647291,24.5775108536592,8.53902180327614,11.4927907221132,20.7990149631429,22.7115188256498,44.7900932009716,48.2453435698164,35.9836958585435,27.1733489822615,27.9753444033523,26.3859307679813,5.71527606113668,6.1506478758457,15.8481681015439,20.2196133825892,12.8000676926039,15.1085323634153,80.3580731014863,78.9148697969038,103.134177562838,92.3523436208692,97.6755043490577,110.696360491103,31.3483076759187,31.2240948156105,30.6523076110008,44.5963066278382,84.8117858319937,77.1098501397996,63.3841470982164,55.1546501203928,73.3138078261355,14.0937389088499,15.2326049822382,10.0828139742739,41.4187692017875,44.699216630446,40.2224231976405,25.6941905291689,29.6234948392338,32.9592329823213,76.2400197155547,56.0255721550018,29.6966906702862,34.6103226898441,44.0497671266582,38.6484142568742,49.5641613864805,19.8047159509192,29.4312945563086,27.7628948983824,55.1306399899341,48.3702104684034,25.7230678351403,28.9453322475074,28.4957823849107,29.731287869835,34.7309559591711,35.1758961156798,26.3772575460388,35.4057180741325,35.4221091978597,57.7908807932859,39.9561453122493,38.0467636964257,24.7488011797881,31.3217697758026,24.9775257405903,26.9585248266135,23.956184553851,14.7830889237856,10.3250865237766,16.9992833426938,10.7940638327563,9.74664626171504,7.16843019355737,8.70755404816862,64.2522316119278,133.270220361272,108.475249374674,26.3377194982393,53.8971205140135,66.2493623237279,35.5533351576666,29.2262905365139,42.0577376688664,34.3756622610053,16.7850303187018,4.91981978929626,12.6175818205101,14.2257967948231,16.1366703505435,17.0655467969483,18.38816214742,13.6402900277418,17.5933227861546,19.7755974187499,11.8571472674328,7.96149496754887,14.5590164952668,11.0420759230197,13.091631834651,3.72783522436244,28.1069565131085,26.3902850584953,20.1811073614787,13.0598485711453,14.9975682748352,18.0439722443752,22.6183865501282,21.5025283324754,23.4973638451056,26.7689453096106,26.338692105024,29.0903262383384,25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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:17904,entrezgene:433297,entrezgene:433688 | |||
|HGNC= | |||
|MCL_coexpression_id=1498 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q60605 | |||
|association_with_transcript=0bp_to_ENSMUST00000164181_5end | |||
|cluster_id=chr10:127930890..127930964,- | |||
|description=CAGE_peak_1_at_Gm11836_5end,CAGE_peak_1_at_Gm5526_5end,CAGE_peak_1_at_Myl6_5end | |||
|id=chr10:127930890..127930964,- | |||
|ontology_enrichment_celltype=CL:0002321!2.06e-13!70;CL:0000220!2.06e-13!70;CL:0000055!5.58e-11!50;CL:0000117!1.83e-09!23;CL:0000337!1.83e-09!23;CL:0002371!1.89e-09!118;CL:0000221!2.17e-09!44;CL:0000133!2.17e-09!44;CL:0002319!3.89e-09!43;CL:0000144!6.57e-09!121;CL:0000012!6.57e-09!121;CL:0000548!3.72e-08!115;CL:0000004!3.72e-08!115;CL:0000255!3.72e-08!115;CL:0000393!3.81e-07!39;CL:0000211!3.81e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.06e-13,70;CL:0000117,1.83e-09,23;CL:0000337,1.83e-09,23;CL:0000221,2.17e-09,44;CL:0000133,2.17e-09,44;CL:0002319,3.89e-09,43;CL:0000393,3.81e-07,39;CL:0000211,3.81e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.00e-15!75;UBERON:0001016!6.00e-15!75;UBERON:0001017!2.17e-14!73;UBERON:0005743!2.17e-14!73;UBERON:0001049!2.32e-14!52;UBERON:0005068!2.32e-14!52;UBERON:0006241!2.32e-14!52;UBERON:0007135!2.32e-14!52;UBERON:0002020!1.77e-13!34;UBERON:0000955!3.05e-13!50;UBERON:0006238!3.05e-13!50;UBERON:0002616!3.09e-13!49;UBERON:0002791!1.56e-11!29;UBERON:0003528!1.56e-11!29;UBERON:0001893!1.56e-11!29;UBERON:0004121!1.15e-10!102;UBERON:0000924!1.15e-10!102;UBERON:0006601!1.15e-10!102;UBERON:0000033!1.25e-10!63;UBERON:0002346!3.43e-10!71;UBERON:0003075!3.43e-10!71;UBERON:0007284!3.43e-10!71;UBERON:0003080!1.88e-09!40;UBERON:0002780!2.79e-09!39;UBERON:0001890!2.79e-09!39;UBERON:0006240!2.79e-09!39;UBERON:0000956!1.55e-08!21;UBERON:0001869!1.55e-08!21;UBERON:0000203!1.55e-08!21;UBERON:0002619!1.25e-07!17;UBERON:0003056!2.05e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.07e-15,54;UBERON:0001016,6.00e-15,75;UBERON:0001017,2.17e-14,73;UBERON:0001049,2.32e-14,52;UBERON:0005068,2.32e-14,52;UBERON:0006241,2.32e-14,52;UBERON:0007135,2.32e-14,52;UBERON:0002020,1.77e-13,34;UBERON:0000955,5.40e-12,47;UBERON:0006238,5.40e-12,47;UBERON:0002616,5.49e-12,46;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0004121,3.53e-11,95;UBERON:0000924,3.53e-11,95;UBERON:0006601,3.53e-11,95;UBERON:0002346,5.19e-11,64;UBERON:0003075,5.19e-11,64;UBERON:0007284,5.19e-11,64;UBERON:0010371,1.18e-09,73;UBERON:0003080,1.88e-09,40;UBERON:0002780,2.79e-09,39;UBERON:0001890,2.79e-09,39;UBERON:0006240,2.79e-09,39;UBERON:0000956,1.55e-08,21;UBERON:0001869,1.55e-08,21;UBERON:0000203,1.55e-08,21;UBERON:0010314,2.91e-08,92;UBERON:0002619,1.25e-07,17;UBERON:0003056,2.05e-07,49 | |||
|phase1_expression=23.2215828301951,39.7831964708872,35.0349414329943,20.2651021575576,27.0483694171027,23.3352187957527,18.4553986070465,11.4919757863003,8.58811205125167,8.19225842126977,7.70480857014772,6.06268408364557,7.53283211697305,10.4030278878607,10.6595123781012,9.51633756732182,19.5877325875881,13.7226041930833,12.4774134581222,15.2780274647291,24.5775108536592,8.53902180327614,11.4927907221132,20.7990149631429,22.7115188256498,44.7900932009716,48.2453435698164,35.9836958585435,27.1733489822615,27.9753444033523,26.3859307679813,5.71527606113668,6.1506478758457,15.8481681015439,20.2196133825892,12.8000676926039,15.1085323634153,80.3580731014863,78.9148697969038,103.134177562838,92.3523436208692,97.6755043490577,110.696360491103,31.3483076759187,31.2240948156105,30.6523076110008,44.5963066278382,84.8117858319937,77.1098501397996,63.3841470982164,55.1546501203928,73.3138078261355,14.0937389088499,15.2326049822382,10.0828139742739,41.4187692017875,44.699216630446,40.2224231976405,25.6941905291689,29.6234948392338,32.9592329823213,76.2400197155547,56.0255721550018,29.6966906702862,34.6103226898441,44.0497671266582,38.6484142568742,49.5641613864805,19.8047159509192,29.4312945563086,27.7628948983824,55.1306399899341,48.3702104684034,25.7230678351403,28.9453322475074,28.4957823849107,29.731287869835,34.7309559591711,35.1758961156798,26.3772575460388,35.4057180741325,35.4221091978597,57.7908807932859,39.9561453122493,38.0467636964257,24.7488011797881,31.3217697758026,24.9775257405903,26.9585248266135,23.956184553851,14.7830889237856,10.3250865237766,16.9992833426938,10.7940638327563,9.74664626171504,7.16843019355737,8.70755404816862,64.2522316119278,133.270220361272,108.475249374674,26.3377194982393,53.8971205140135,66.2493623237279,35.5533351576666,29.2262905365139,42.0577376688664,34.3756622610053,16.7850303187018,4.91981978929626,12.6175818205101,14.2257967948231,16.1366703505435,17.0655467969483,18.38816214742,13.6402900277418,17.5933227861546,19.7755974187499,11.8571472674328,7.96149496754887,14.5590164952668,11.0420759230197,13.091631834651,3.72783522436244,28.1069565131085,26.3902850584953,20.1811073614787,13.0598485711453,14.9975682748352,18.0439722443752,22.6183865501282,21.5025283324754,23.4973638451056,26.7689453096106,26.338692105024,29.0903262383384,25.471878301638,17.4145312184041,15.3020573850414,14.9106427475868,10.3116509384372,12.4915625244196,16.7828536236435,15.3052810334547,17.9338733224501,12.7908618404496,14.7330778327577,17.2411173189901,15.0047955028629,10.7783996466421,10.7790465695657,14.2520410572799,16.8780713969233,16.6828349535359,14.9748431604532,14.8163138213719,10.1507476077432,9.83098462238529,11.8380037272769,11.9348669746149,22.9909607514407,18.7620847984877,23.0479438670099,16.8088762265499,16.5281954667819,16.8151153047242,13.9520366850245,15.5598572811779,11.7932995790841,9.54447129498187,11.4917224855367,5.43161023957233,8.47959927066927,7.90380415047782,7.64976586934119,24.814213930567,19.1402579025469,18.8338706300765,12.9580777665137,16.8497717922835,15.5598570146494,13.1444810548535,13.7144796743873,16.2335972006755,17.5007576023554,16.1339880925134,13.8347121968169,14.0747716928151,17.9060824837036,15.4021628824105,17.9763881730844,20.3169766882213,20.5115511451998,13.2767530667157,12.9100819248994,9.01661885384643,10.386217720111,14.9343415119072,11.01132372278,10.6237382368752,13.5801336141234,11.6179058602617,11.2291419168838,8.89357881261447,11.8460025058427,8.84515478009414,12.5922782935518,10.3458661908136,8.20002343158217,11.4581633301639,10.9324532231308,7.45822043165163,11.2570179407113,4.31304619582064,7.07067800570156,8.7370548472077,7.57736633841335,10.0462551572271,7.23665282045051,16.9972934953276,11.5589761179996,13.8520229975722,15.4468028055421,16.8976978767722,17.9231695462743,19.7576221935391,18.3425628986331,15.9211495547253,20.5962161373361,18.018388858296,21.1383675983302,21.9309926969687,18.370430439852,24.1266054302836,21.7562273527484,9.34352118736169,17.3840150171981,34.1972756673997,36.4528345301752,17.3771042099276,8.07906967053994,14.1978698737316,14.055794794679,13.5716740571663,12.1874086955802,12.4767257486141,11.0399847007645,8.09621403349789,13.4437694639203,10.2774822266096,17.6726724031994,11.639086987078,21.3678724400706,13.1938437076397,18.6416238958965,3.98235415019888,12.624593080059,17.5347663039556,16.9744571780308,15.651000322681,10.7602301780375,11.3708448994017,11.9966130727577,15.329387270543,8.53299246426703,11.5960469432499,14.4389760547462,8.85142974959849,13.5045820523483,16.5579115241926,15.2179294872431,15.6059405605201,17.4801441250029,17.4421961838248,12.4830629136986,26.0485595950719,18.0057260234247,11.2469483008031,15.0046490176747,7.91175690809937,14.6560407575419,13.966564248367,17.0706535734864,17.488850197791,33.0057037578707,10.2522528478712,13.8279201535359,11.6672552242918,9.60679130723924,7.51818252465638,13.0403558727718,15.6380155594347,11.1961161858926,13.5435974328335,26.7307773044232,12.020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| |||
|short_description=p1@Gm11836,p1@Gm5526,p1@Myl6 | |||
}} |
Revision as of 02:52, 4 August 2015
Short description: | p1@Gm11836, p1@Gm5526, p1@Myl6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm11836_5end, CAGE_peak_1_at_Gm5526_5end, CAGE_peak_1_at_Myl6_5end |
Coexpression cluster: | MCL_coexpression_mm9:1498 |
Association with transcript: | 0bp_to_ENSMUST00000164181_5end |
EntrezGene: | 17904,433297,433688 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.06e-13 | 70 |
CNS neuron (sensu Vertebrata) | 1.83e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.83e-09 | 23 |
ectodermal cell | 2.17e-09 | 44 |
neurectodermal cell | 2.17e-09 | 44 |
neural cell | 3.89e-09 | 43 |
electrically responsive cell | 3.81e-07 | 39 |
electrically active cell | 3.81e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.07e-15 | 54 |
nervous system | 6.00e-15 | 75 |
central nervous system | 2.17e-14 | 73 |
neural tube | 2.32e-14 | 52 |
neural rod | 2.32e-14 | 52 |
future spinal cord | 2.32e-14 | 52 |
neural keel | 2.32e-14 | 52 |
gray matter | 1.77e-13 | 34 |
brain | 5.40e-12 | 47 |
future brain | 5.40e-12 | 47 |
regional part of brain | 5.49e-12 | 46 |
brain grey matter | 1.56e-11 | 29 |
regional part of telencephalon | 1.56e-11 | 29 |
telencephalon | 1.56e-11 | 29 |
ectoderm-derived structure | 3.53e-11 | 95 |
ectoderm | 3.53e-11 | 95 |
presumptive ectoderm | 3.53e-11 | 95 |
neurectoderm | 5.19e-11 | 64 |
neural plate | 5.19e-11 | 64 |
presumptive neural plate | 5.19e-11 | 64 |
ecto-epithelium | 1.18e-09 | 73 |
anterior neural tube | 1.88e-09 | 40 |
regional part of forebrain | 2.79e-09 | 39 |
forebrain | 2.79e-09 | 39 |
future forebrain | 2.79e-09 | 39 |
cerebral cortex | 1.55e-08 | 21 |
cerebral hemisphere | 1.55e-08 | 21 |
pallium | 1.55e-08 | 21 |
structure with developmental contribution from neural crest | 2.91e-08 | 92 |
regional part of cerebral cortex | 1.25e-07 | 17 |
pre-chordal neural plate | 2.05e-07 | 49 |