FFCP PHASE1:Hg19::chr2:204571337..204571370,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=940 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1653 | |||
|TSSclassifier=strong | |||
|UniProt=A8MQU8 | |||
|association_with_transcript=-45bp_to_ENST00000374478_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_CD28_5end | |||
|id=chr2:204571337..204571370,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.91e-31!140;CL:0002087!1.43e-27!119;CL:0002031!4.30e-22!124;CL:0000037!3.96e-21!172;CL:0000566!3.96e-21!172;CL:0000791!3.97e-20!18;CL:0000789!3.97e-20!18;CL:0002420!3.97e-20!18;CL:0002419!3.97e-20!18;CL:0000790!3.97e-20!18;CL:0002032!1.05e-18!165;CL:0000837!1.05e-18!165;CL:0000988!1.69e-18!182;CL:0000084!5.50e-18!25;CL:0000827!5.50e-18!25;CL:0000838!3.28e-16!52;CL:0000542!1.12e-15!53;CL:0000051!1.12e-15!53;CL:0000625!5.02e-13!11;CL:0000766!2.49e-12!76;CL:0002194!2.42e-10!63;CL:0000576!2.42e-10!63;CL:0000040!2.42e-10!63;CL:0000559!2.42e-10!63;CL:0002009!1.03e-09!65;CL:0002057!8.57e-09!42;CL:0000624!1.78e-08!6;CL:0000839!2.57e-08!70;CL:0000557!4.59e-08!71;CL:0000860!1.01e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.36e-27;18!CL:0000789;2.36e-27;18!CL:0002419;2.36e-27;18!CL:0000084;1.31e-25;25!CL:0000625;6.48e-19;11!CL:0000624;5.03e-12;6!CL:0000542;8.82e-10;53!CL:0000094;6.54e-09;8!CL:0000898;7.02e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.46e-27,18;CL:0000789,2.46e-27,18;CL:0002420,2.46e-27,18;CL:0002419,2.46e-27,18;CL:0000790,2.46e-27,18;CL:0000084,1.36e-25,25;CL:0000827,1.36e-25,25;CL:0000738,2.72e-23,136;CL:0002087,1.51e-20,115;CL:0000838,1.41e-19,52;CL:0000542,4.90e-19,53;CL:0000051,4.90e-19,53;CL:0000625,6.68e-19,11;CL:0000037,1.17e-16,168;CL:0002031,7.53e-16,120;CL:0000988,5.18e-15,177;CL:0002032,2.20e-14,161;CL:0000837,2.20e-14,161;CL:0000624,5.09e-12,6;CL:0000094,6.02e-09,8;CL:0000898,7.10e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.36e-27;18!CL:0000051;8.82e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.25e-22!115;UBERON:0002390!1.95e-15!102;UBERON:0003061!1.95e-15!102;UBERON:0002193!3.12e-14!112;UBERON:0000178!1.30e-09!15;UBERON:0000179!1.30e-09!15;UBERON:0000463!1.30e-09!15;UBERON:0002371!8.26e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.76e-14;15!UBERON:0000179;1.76e-14;15!UBERON:0000463;1.76e-14;15!UBERON:0002390;1.81e-10;32!UBERON:0002193;4.04e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.78e-14,15;UBERON:0000179,1.78e-14,15;UBERON:0000463,1.78e-14,15;UBERON:0002390,1.13e-10,98;UBERON:0003061,1.13e-10,98;UBERON:0002193,1.96e-10,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,5.50709987588466,6.52509976765262,4.4896675761662,0,0,0,1.00707360754392,0.142169232487422,0,4.9859586767869,7.82123345133553,14.9737500793938,2.68698569087909,6.80176698639857,2.83333124397605,0,0,0.242584061187816,0.232429036905685,1.23350366406548,0.929119112685311,0.28769239232215,1.5369642391746,0.236482229888585,1.37898272294647,1.29096936716765,0,0.188242339542605,0.545812300115692,0.898893937780338,0,2.24650318953266,1.27867425159808,0,0.199463657621632,0.426224750532694,0.580418477257168,1.13477044938228,0.622822248995575,0.502497330513487,1.0429658368404,0.217188844705117,0.605399502633369,0,0.632924774881769,0,0,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0,0,0,0,0,0,0,1.17447437874188,0,0,16.8152568894461,0,108.583793102836,75.8510772105888,92.3150730507796,84.2619936769018,84.0879447914663,86.6409484494562,62.3445530905316,78.2101407333919,117.842362989935,141.117090849767,140.276401430278,67.3760341757051,71.6627005054929,27.6255679734176,27.0823017430131,46.0786906318733,76.9607262811094,107.016331235885,97.2180371386284,65.6061094218908,127.995644863042,121.644115700851,155.607110591994,49.6962046345591,49.4823424930878,38.018081777935,66.25305239422,81.3994846942101,41.2271397622741,47.1186731567594,32.0239918799208,30.2410114837099,25.6742587952167,37.0750473939965,0,0,0,0,0,0,0,0,0,0,0.175669571386252,1.11332214173056,0,0,0.649094787309367,0,0.398873881556595,0.476981248610684,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,15.511210565933,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.9024169590255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47730203652438,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,12.054170194371,2.10833939483032,0,0,0,0,0,0,0.224170287987055,30.5397678312987,25.444053833423,29.2622122717826,0,0,0,0,0,0,2.99161459204025,4.14415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.8723889111028,23.2971336884106,31.2711744364092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44257416306811,0,0,0,0,0,0,0,0,0,0,0,0.340906509664404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,1.97701981631236,0,0,0,0,25.8798280708406,19.8805673857018,15.3804740537024,19.7732373629965,14.3976795580168,26.5874057589014,36.1821062949537,15.0693783495911,0,0,0,0,0,57.1269002087765,17.5368900001705,0,0,0,0,0,8.6729178032613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90460633053462,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0,3.58646378851925,11.0513566212459,0,0,0,0,0,0,0,3.55116260292961,31.1328020051022,0,0,0.185536196323703,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.538651809526579,0,0,0,0,0.638002319463839,0,0,18.3947936752326,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,1.32686346755009,2.4441205797345,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,0,6.04953580243319,0.30607276163049,1.26373159256976,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0,0,0,0,0.290967049465258,0,0.677942222341597,0,0,0.126621591911757,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0.223171457441873,0.940568614814168,0,0,0,0,0,0,36.4942061203531,0,0,0,0,0,0,0,0.242998226632099,0,0.945668487590378,0.472091293214983,0,0,0,3.57347663186684,0,0,0,0,0,0,0,0,0,0.146552233678082,2.65013777824443,0,0.13223260174269,0,0,4.0579216775724,1.25763444079733,1.65695622138878,17.8619767852302,16.9946003432232,0,0,0,0.2506898940227,0,0,0,0,0,0.250381861413,0,0.332787154610557,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0.163565394255844,0,0,0,0,0,53.0422137355312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0.752103283492572,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0.535701835878287,0.336283722218824,0,0,3.99160665731875,5.5312314026774,0,0.0679697329768317,0.197318320688547,0,0,0.863424021355654,0,0,1.82631744101899,0,0,0.643288897589907,0,0,0,0,0,0,0,0.860454717640555,0,0,0.846774100381858,0,0,0,0,0,0,0,0.410651227424988,2.3196288626764,2.4285549652957,0,0,0,0,0,0,1.31196068783506,1.5299169235277,0,0.245148321753905,0,0.588925401344836,0,1.2679671827502,0,4.32326022707326,5.28554681383333,0,0,0,0,1.46067277649303,2.75237570042724,0.143339583151451,0,0.0679914901909147,0.436350690340377,4.7612415646386,0,0,0,0,0,0.126698501011437,0,0,0,0,0.606229585745915,0.267964130156178,0,0,2.98527574661373,1.90451545170992,21.378929155718,42.5832540069585,0,0.12729431655633,1.0105859447911,0.653150243690884,0.68446660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| |||
|short_description=p1@CD28 | |||
}} |
Revision as of 08:01, 21 January 2014
Short description: | p1@CD28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD28_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -45bp_to_ENST00000374478_5end |
EntrezGene: | CD28 |
HGNC: | 1653 |
UniProt: | A8MQU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.46e-27 | 18 |
alpha-beta T cell | 2.46e-27 | 18 |
immature T cell | 2.46e-27 | 18 |
mature T cell | 2.46e-27 | 18 |
immature alpha-beta T cell | 2.46e-27 | 18 |
T cell | 1.36e-25 | 25 |
pro-T cell | 1.36e-25 | 25 |
leukocyte | 2.72e-23 | 136 |
nongranular leukocyte | 1.51e-20 | 115 |
lymphoid lineage restricted progenitor cell | 1.41e-19 | 52 |
lymphocyte | 4.90e-19 | 53 |
common lymphoid progenitor | 4.90e-19 | 53 |
CD8-positive, alpha-beta T cell | 6.68e-19 | 11 |
hematopoietic stem cell | 1.17e-16 | 168 |
hematopoietic lineage restricted progenitor cell | 7.53e-16 | 120 |
hematopoietic cell | 5.18e-15 | 177 |
hematopoietic oligopotent progenitor cell | 2.20e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.20e-14 | 161 |
CD4-positive, alpha-beta T cell | 5.09e-12 | 6 |
granulocyte | 6.02e-09 | 8 |
naive T cell | 7.10e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.78e-14 | 15 |
haemolymphatic fluid | 1.78e-14 | 15 |
organism substance | 1.78e-14 | 15 |
hematopoietic system | 1.13e-10 | 98 |
blood island | 1.13e-10 | 98 |
hemolymphoid system | 1.96e-10 | 108 |