FFCP PHASE1:Mm9::chr10:126703312..126703348,+: Difference between revisions
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{{FFCP|EntrezGene=69654|HGNC=|MCL_coexpression_id=13|UniProt=Q3TPZ5,Q99KJ8|association_with_transcript=0bp_to_NM_001190453,NM_001190454,NM_027151,uc007hiu.2,uc011xpo.1_5end|description=CAGE_peak_2_at_Dctn2_5end|id=chr10:126703312..126703348,+|ontology_enrichment_celltype=CL:0000117!6.43e-13!23;CL:0000337!6.43e-13!23;CL:0000221!2.06e-10!44;CL:0000133!2.06e-10!44;CL:0002319!2.46e-10!43;CL:0000540!2.66e-09!33;CL:0000047!2.66e-09!33;CL:0000031!2.66e-09!33;CL:0000404!2.66e-09!33;CL:0000055!2.88e-09!50;CL:0000393!3.69e-08!39;CL:0000211!3.69e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,6.43e-13,23;CL:0000337,6.43e-13,23;CL:0000221,2.06e-10,44;CL:0000133,2.06e-10,44;CL:0002319,2.45e-10,43;CL:0000540,2.66e-09,33;CL:0000047,2.66e-09,33;CL:0000031,2.66e-09,33;CL:0000404,2.66e-09,33;CL:0000393,3.69e-08,39;CL:0000211,3.69e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.15e-26!73;UBERON:0005743!8.15e-26!73;UBERON:0007811!5.33e-25!86;UBERON:0000073!1.16e-24!75;UBERON:0001016!1.16e-24!75;UBERON:0000153!5.32e-24!94;UBERON:0000955!1.83e-23!50;UBERON:0006238!1.83e-23!50;UBERON:0001049!1.87e-23!52;UBERON:0005068!1.87e-23!52;UBERON:0006241!1.87e-23!52;UBERON:0007135!1.87e-23!52;UBERON:0002616!1.05e-22!49;UBERON:0000033!6.75e-21!63;UBERON:0004121!8.86e-20!102;UBERON:0000924!8.86e-20!102;UBERON:0006601!8.86e-20!102;UBERON:0002020!9.10e-19!34;UBERON:0003080!1.65e-18!40;UBERON:0002346!4.57e-18!71;UBERON:0003075!4.57e-18!71;UBERON:0007284!4.57e-18!71;UBERON:0002780!6.25e-18!39;UBERON:0001890!6.25e-18!39;UBERON:0006240!6.25e-18!39;UBERON:0003056!5.70e-17!49;UBERON:0002791!1.12e-16!29;UBERON:0003528!1.12e-16!29;UBERON:0001893!1.12e-16!29;UBERON:0000956!2.31e-12!21;UBERON:0001869!2.31e-12!21;UBERON:0000203!2.31e-12!21;UBERON:0002619!4.49e-10!17;UBERON:0000064!4.58e-09!99;UBERON:0002021!3.81e-07!10;UBERON:0000411!3.81e-07!10;UBERON:0001950!3.81e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.14e-26,73;UBERON:0000073,4.81e-25,54;UBERON:0001016,1.15e-24,75;UBERON:0001049,1.86e-23,52;UBERON:0005068,1.86e-23,52;UBERON:0006241,1.86e-23,52;UBERON:0007135,1.86e-23,52;UBERON:0004121,5.04e-22,95;UBERON:0000924,5.04e-22,95;UBERON:0006601,5.04e-22,95;UBERON:0000955,1.98e-21,47;UBERON:0006238,1.98e-21,47;UBERON:0002346,4.91e-21,64;UBERON:0003075,4.91e-21,64;UBERON:0007284,4.91e-21,64;UBERON:0002616,1.10e-20,46;UBERON:0010371,4.36e-20,73;UBERON:0002020,9.09e-19,34;UBERON:0003080,1.65e-18,40;UBERON:0002780,6.25e-18,39;UBERON:0001890,6.25e-18,39;UBERON:0006240,6.25e-18,39;UBERON:0003056,5.69e-17,49;UBERON:0003528,1.12e-16,29;UBERON:0002791,1.12e-16,29;UBERON:0001893,1.12e-16,29;UBERON:0000956,2.31e-12,21;UBERON:0001869,2.31e-12,21;UBERON:0000203,2.31e-12,21;UBERON:0010314,3.32e-12,92;UBERON:0002619,4.49e-10,17;UBERON:0002021,3.81e-07,10;UBERON:0000411,3.81e-07,10;UBERON:0001950,3.81e-07,10|phase1_expression=3.84357233051505,4.53668029931169,2.27499619694768,3.0246421130683,5.00895729946347,1.84667199103079,2.10251376535973,18.593758575587,4.50523910885334,3.04283884218592,11.8140398075598,7.81767158154297,20.7152883216759,20.4563741660454,3.33109761815663,3.03712901084739,3.49780939064073,10.4102514568218,9.59801035240171,19.0975343309114,10.8855411393369,1.19149141441062,1.30599894569468,2.55987876469451,2.52350209173887,3.44539178469012,3.4460959692726,2.58565479223067,3.23039813075836,1.76421090831952,1.77384408524244,1.27006134691926,1.84519436275371,0,0.577703239502549,1.16364251750945,2.04169356262369,8.78916424547506,7.813353445238,6.28228492768558,22.9410280332096,12.294818729252,8.25367600152961,4.53228544712078,4.35920804243913,7.52541683862894,7.82391344348039,6.75877984779384,7.90870257844099,6.22175677037707,8.81914456239784,11.5002051491977,14.0937389088499,13.0565185562042,11.0910953717013,1.28629718017973,2.57880095944881,7.73508138416164,20.2316460859598,16.9277113367051,17.1134478946668,7.79342423759004,9.78224275722253,4.49949858640699,2.96659908770092,5.6838409195688,8.98800331555214,9.98967593836042,19.3899575016853,22.9510095163874,23.7667206327062,9.42648248532552,12.3686382932904,24.8656322406357,20.2233943848479,34.0110951045708,28.6301290598411,21.7068474744819,23.0409799884365,16.0901271030836,15.2784364816024,17.7110545989298,28.4766658981409,15.757353080887,19.7109739632085,17.0884579574727,17.938831780687,17.335148461753,3.48340489332647,2.56943304363071,3.76823835312181,4.30211938490693,3.39985666853875,2.69851595818909,1.94932925234301,2.68816132258401,3.23022166303029,2.38602451609281,3.63700406444016,1.41335829804136,5.63373679106722,2.56652954828636,15.2883143823987,0,1.08245520505607,2.02687892380079,3.0331466700887,3.53970027129086,13.2058320660058,5.19547486726887,4.51061849591953,2.13125834818499,3.45923245884088,3.46662073271032,1.99900802130698,2.76466500925286,0.988779870937496,2.31358971071859,1.76922110389975,1.94120219936891,4.41683036920787,1.45462575940567,3.72783522436244,15.517382241612,9.63454851341893,2.043656441668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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69654 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3TPZ5,uniprot:Q99KJ8 | |||
|association_with_transcript=0bp_to_NM_001190453,NM_001190454,NM_027151,uc007hiu.2,uc011xpo.1_5end | |||
|cluster_id=chr10:126703312..126703348,+ | |||
|description=CAGE_peak_2_at_Dctn2_5end | |||
|id=chr10:126703312..126703348,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.43e-13!23;CL:0000337!6.43e-13!23;CL:0000221!2.06e-10!44;CL:0000133!2.06e-10!44;CL:0002319!2.46e-10!43;CL:0000540!2.66e-09!33;CL:0000047!2.66e-09!33;CL:0000031!2.66e-09!33;CL:0000404!2.66e-09!33;CL:0000055!2.88e-09!50;CL:0000393!3.69e-08!39;CL:0000211!3.69e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.43e-13,23;CL:0000337,6.43e-13,23;CL:0000221,2.06e-10,44;CL:0000133,2.06e-10,44;CL:0002319,2.45e-10,43;CL:0000540,2.66e-09,33;CL:0000047,2.66e-09,33;CL:0000031,2.66e-09,33;CL:0000404,2.66e-09,33;CL:0000393,3.69e-08,39;CL:0000211,3.69e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.15e-26!73;UBERON:0005743!8.15e-26!73;UBERON:0007811!5.33e-25!86;UBERON:0000073!1.16e-24!75;UBERON:0001016!1.16e-24!75;UBERON:0000153!5.32e-24!94;UBERON:0000955!1.83e-23!50;UBERON:0006238!1.83e-23!50;UBERON:0001049!1.87e-23!52;UBERON:0005068!1.87e-23!52;UBERON:0006241!1.87e-23!52;UBERON:0007135!1.87e-23!52;UBERON:0002616!1.05e-22!49;UBERON:0000033!6.75e-21!63;UBERON:0004121!8.86e-20!102;UBERON:0000924!8.86e-20!102;UBERON:0006601!8.86e-20!102;UBERON:0002020!9.10e-19!34;UBERON:0003080!1.65e-18!40;UBERON:0002346!4.57e-18!71;UBERON:0003075!4.57e-18!71;UBERON:0007284!4.57e-18!71;UBERON:0002780!6.25e-18!39;UBERON:0001890!6.25e-18!39;UBERON:0006240!6.25e-18!39;UBERON:0003056!5.70e-17!49;UBERON:0002791!1.12e-16!29;UBERON:0003528!1.12e-16!29;UBERON:0001893!1.12e-16!29;UBERON:0000956!2.31e-12!21;UBERON:0001869!2.31e-12!21;UBERON:0000203!2.31e-12!21;UBERON:0002619!4.49e-10!17;UBERON:0000064!4.58e-09!99;UBERON:0002021!3.81e-07!10;UBERON:0000411!3.81e-07!10;UBERON:0001950!3.81e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.14e-26,73;UBERON:0000073,4.81e-25,54;UBERON:0001016,1.15e-24,75;UBERON:0001049,1.86e-23,52;UBERON:0005068,1.86e-23,52;UBERON:0006241,1.86e-23,52;UBERON:0007135,1.86e-23,52;UBERON:0004121,5.04e-22,95;UBERON:0000924,5.04e-22,95;UBERON:0006601,5.04e-22,95;UBERON:0000955,1.98e-21,47;UBERON:0006238,1.98e-21,47;UBERON:0002346,4.91e-21,64;UBERON:0003075,4.91e-21,64;UBERON:0007284,4.91e-21,64;UBERON:0002616,1.10e-20,46;UBERON:0010371,4.36e-20,73;UBERON:0002020,9.09e-19,34;UBERON:0003080,1.65e-18,40;UBERON:0002780,6.25e-18,39;UBERON:0001890,6.25e-18,39;UBERON:0006240,6.25e-18,39;UBERON:0003056,5.69e-17,49;UBERON:0003528,1.12e-16,29;UBERON:0002791,1.12e-16,29;UBERON:0001893,1.12e-16,29;UBERON:0000956,2.31e-12,21;UBERON:0001869,2.31e-12,21;UBERON:0000203,2.31e-12,21;UBERON:0010314,3.32e-12,92;UBERON:0002619,4.49e-10,17;UBERON:0002021,3.81e-07,10;UBERON:0000411,3.81e-07,10;UBERON:0001950,3.81e-07,10 | |||
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| |||
|short_description=p2@Dctn2 | |||
}} |
Revision as of 01:02, 4 August 2015
Short description: | p2@Dctn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dctn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_NM_001190453, NM_001190454, NM_027151, uc007hiu.2, uc011xpo.1_5end |
EntrezGene: | 69654 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.43e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.43e-13 | 23 |
ectodermal cell | 2.06e-10 | 44 |
neurectodermal cell | 2.06e-10 | 44 |
neural cell | 2.45e-10 | 43 |
neuron | 2.66e-09 | 33 |
neuronal stem cell | 2.66e-09 | 33 |
neuroblast | 2.66e-09 | 33 |
electrically signaling cell | 2.66e-09 | 33 |
electrically responsive cell | 3.69e-08 | 39 |
electrically active cell | 3.69e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.14e-26 | 73 |
regional part of nervous system | 4.81e-25 | 54 |
nervous system | 1.15e-24 | 75 |
neural tube | 1.86e-23 | 52 |
neural rod | 1.86e-23 | 52 |
future spinal cord | 1.86e-23 | 52 |
neural keel | 1.86e-23 | 52 |
ectoderm-derived structure | 5.04e-22 | 95 |
ectoderm | 5.04e-22 | 95 |
presumptive ectoderm | 5.04e-22 | 95 |
brain | 1.98e-21 | 47 |
future brain | 1.98e-21 | 47 |
neurectoderm | 4.91e-21 | 64 |
neural plate | 4.91e-21 | 64 |
presumptive neural plate | 4.91e-21 | 64 |
regional part of brain | 1.10e-20 | 46 |
ecto-epithelium | 4.36e-20 | 73 |
gray matter | 9.09e-19 | 34 |
anterior neural tube | 1.65e-18 | 40 |
regional part of forebrain | 6.25e-18 | 39 |
forebrain | 6.25e-18 | 39 |
future forebrain | 6.25e-18 | 39 |
pre-chordal neural plate | 5.69e-17 | 49 |
brain grey matter | 1.12e-16 | 29 |
regional part of telencephalon | 1.12e-16 | 29 |
telencephalon | 1.12e-16 | 29 |
cerebral cortex | 2.31e-12 | 21 |
cerebral hemisphere | 2.31e-12 | 21 |
pallium | 2.31e-12 | 21 |
structure with developmental contribution from neural crest | 3.32e-12 | 92 |
regional part of cerebral cortex | 4.49e-10 | 17 |
occipital lobe | 3.81e-07 | 10 |
visual cortex | 3.81e-07 | 10 |
neocortex | 3.81e-07 | 10 |